jgi.p|Nanoce1779_2|589375, mRNA_4512 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589375
Unique Name	mRNA_4512
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1753
Alignment location	scaffold_10:780240..782085 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589461
Track	FilteredModels2
ProteinId	589375

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:780240..782085 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589375	gene_4512	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589375	mRNA_4512-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4512	CDS_4512	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:780240..782085+
coding sequence from alignment at scaffold_10:780240..782085+

mRNA sequence

>mRNA_4512 ID=mRNA_4512|Name=jgi.p|Nanoce1779_2|589375|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp
AGGCTGCGAGCGAGCGAGGACGGTGCCTGCCGTGGTCGTATTATCGAAGG
GGAGCTGCCTGGCCTGCATCGACACATCGACCTCCTCCTCCGTCTCCTCG
ACGACTTTGTAGGCATTGGCGGTGAGATAAACGGCCATGCGGCTCGAGGC
GTGGTACTGGAAGGTCCCTCGGGGTCAGGCAAGACGGCATTGGCCAAGGC
AGTGGGCAAGTATGGTGGGTTGCCCTTTCACTACTTCTCCTGCCCCAGCT
TCTTTGGTCCAGACCGAGGGGATGCGGAGAGGTGCGTGCTGGGAGCCTTT
CAAGCGTGTGCGGACAAGGCGGCCGCGGACGATTGTGGAGGTTGCCTGCT
CATTTTAGACGAGGTGGAGAGTATTGGCAAGGACCGCAACCGCGCACGCG
TCGTGACGGACCTAGGGGTATTGGCCATGCTTCTTGAGTGCTTCCATCGG
CCCGCATTTGCTTGTGTGTTTATCGTAGGCATCGCGGGGGATGCCTCGGT
CCTTGACCCCAGCCTCCTGCAACCTGGTCGACTGGAAGTCACTTTCAGCC
TAATCGCACCCACACTGCAGCAGCGTCAAGCCATACTCCAAAATCTACTT
TACAGACTGGGCACAACACTTAAAGTGAAAGGCAAGGGAGACAATGTTTC
GCGGCAGCATCTGCTCGAGAGTCTCACACGTGGAACTCGGGGCTTTAGTA
GCGCGGACCTCTCCCGCCTCTGCACCGAAGCCTTGGCCTCCGCCCACAGC
CGTAGCAACACAACTACCGATACTCTAAGTATTCAAGAAGAAGACTGGGA
ATCTGCATTGGAGAGCGCACGTCCAATTGACATTCCTTGGTCTTCGCCTT
CAGGGGCCCAATTATCCGACCTGGCAGGGATGGACGACATCATTCGCACC
CTCTCGGAAGCTGTTCTCCTTCCTCTCTCCCGCCCCGATACTCTCGCAGC
CATGGGTGTACCTCGCGTGTCGTTTGGCGTGCTGTTACATGGGCCCTCAG
GCACGGGGAAGAGCTCCTTGGGCCGAGCACTGGCGACGGCGGCGAGGCCC
TATGCGAGTTTCTTGGCCGTCGAGTGCCCTGAGTTGGTTAACAAGGTGGT
GGGAGAGTCCGAGAGGGCGGTGGCCCGATTATTTCAAACAGCCAGACAAG
TGGCGCCATGTATTTTATTTTTGGACCACGTGGAAGCGATAGCGGGCAAG
AGGGGATTTGACTCGTCGACGGAGCAGACGATGGATCGGTTGCTTAGCAC
TTTGTTGGTAGAGATGGATGGGCTTGGAAGTGGAGGTGAAGGAGAAGGAG
GAGGGAATCAGCTTATTGTCGTAGTGGCAGTGACGAATCATTTCTCCATG
CTGGATGACGCGATCTTGAGACCGGGGCGGCTGGGGTTGCATATGGAGAT
AGGGTTGCCTGATGTGGAAGGACGGACGGCTATTTACTCGCATCATCTTG
CACGACTGCCTTTGTGCTTTGATGAGGCTGATGGGGTAGAAAGCAAGGAC
TTTGCGTCTTTATCTAGCTTGGCATCACACATGGCGAGAATGAGCGAGGG
GTTATCGGGCGCGGATATACAGGGGGTCTGTCAAGAGGCGGCCTTGCTGG
GCTTGCGGGAGGATTTGAATCGGAAGCATTTGCTGCCTAGGCACATCTTG
CGGGCATTGGCGGTGCTACGAGGGGGCTGACTAAGTCTTAAAAATAACAA
AGAAATTATTAGATGAGTCGATTGAATTATCCAGGCGCTTTGTTATGCTT
TGC

protein sequence of jgi.p|Nanoce1779_2|589375

>mRNA_4512-protein ID=mRNA_4512-protein|Name=jgi.p|Nanoce1779_2|589375|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MLLECFHRPAFACVFIVGIAGDASVLDPSLLQPGRLEVTFSLIAPTLQQR
QAILQNLLYRLGTTLKVKGKGDNVSRQHLLESLTRGTRGFSSADLSRLCT
EALASAHSRSNTTTDTLSIQEEDWESALESARPIDIPWSSPSGAQLSDLA
GMDDIIRTLSEAVLLPLSRPDTLAAMGVPRVSFGVLLHGPSGTGKSSLGR
ALATAARPYASFLAVECPELVNKVVGESERAVARLFQTARQVAPCILFLD
HVEAIAGKRGFDSSTEQTMDRLLSTLLVEMDGLGSGGEGEGGGNQLIVVV
AVTNHFSMLDDAILRPGRLGLHMEIGLPDVEGRTAIYSHHLARLPLCFDE
ADGVESKDFASLSSLASHMARMSEGLSGADIQGVCQEAALLGLREDLNRK
HLLPRHILRALAVLRGG*

mRNA from alignment at scaffold_10:780240..782085+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4512 ID=mRNA_4512|Name=jgi.p|Nanoce1779_2|589375|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp|location=Sequence derived from alignment at scaffold_10:780240..782085+ (Nannochloropsis oceanica)
AGGCTGCGAGCGAGCGAGGACGGTGCCTGCCGTGGTCGTATTATCGAAGG
GGAGCTGCCTGGCCTGCATCGACACATCGACCTCCTCCTCCGTCTCCTCG
ACGACTTTGTAGGCATTGGCGGTGAGATAAACGGCCATGCGGCTCGAGGC
GTGGTACTGGAAGGTCCCTCGGGGTCAGGCAAGACGGCATTGGCCAAGGC
AGTGGGCAAGTATGGTGGGTTGCCCTTTCACTACTTCTCCTGCCCCAGCT
TCTTTGGTCCAGACCGAGGGGATGCGGAGAGGTGCGTGCTGGGAGCCTTT
CAAGCGTGTGCGGACAAGGCGGCCGCGGACGATTGTGGAGGTTGCCTGCT
CATTTTAGACGAGGTGGAGAGTATTGGCAAGGTGCGTCTGGAAGTTATAG
TGGGAAGTCGGTTGCGTGCACGGTTCGCCCCATCTCACCACCCCTCCTCT
CTACGCTTTCATACTCCAAAATAGGACCGCAACCGCGCACGCGTCGTGAC
GGACCTAGGGGTATTGGCCATGCTTCTTGAGTGCTTCCATCGGCCCGCAT
TTGCTTGTGTGTTTATCGTAGGCATCGCGGGGGATGCCTCGGTCCTTGAC
CCCAGCCTCCTGCAACCTGGTCGACTGGAAGTCACTTTCAGCCTAATCGC
ACCCACACTGCAGCAGCGTCAAGCCATACTCCAAAATCTACTTTACAGAC
TGGGCACAACACTTAAAGTGAAAGGCAAGGGAGACAATGTTTCGCGGCAG
CATCTGCTCGAGAGTCTCACACGTGGAACTCGGGGCTTTAGTAGCGCGGA
CCTCTCCCGCCTCTGCACCGAAGCCTTGGCCTCCGCCCACAGCCGTAGCA
ACACAACTACCGATACTCTAAGTATTCAAGAAGAAGACTGGGAATCTGCA
TTGGAGAGCGCACGTCCAATTGACATTCCTTGGTCTTCGCCTTCAGGGGC
CCAATTATCCGACCTGGCAGGGATGGACGACATCATTCGCACCCTCTCGG
AAGCTGTTCTCCTTCCTCTCTCCCGCCCCGATACTCTCGCAGCCATGGGT
GTACCTCGCGTGTCGTTTGGCGTGCTGTTACATGGGCCCTCAGGCACGGG
GAAGAGCTCCTTGGGCCGAGCACTGGCGACGGCGGCGAGGCCCTATGCGA
GTTTCTTGGCCGTCGAGTGCCCTGAGTTGGTTAACAAGGTGGTGGGAGAG
TCCGAGAGGGCGGTGGCCCGATTATTTCAAACAGCCAGACAAGTGGCGCC
ATGTATTTTATTTTTGGACCACGTGGAAGCGATAGCGGGCAAGAGGGGAT
TTGACTCGTCGACGGAGCAGACGATGGATCGGTTGCTTAGCACTTTGTTG
GTAGAGATGGATGGGCTTGGAAGTGGAGGTGAAGGAGAAGGAGGAGGGAA
TCAGCTTATTGTCGTAGTGGCAGTGACGAATCATTTCTCCATGCTGGATG
ACGCGATCTTGAGACCGGGGCGGCTGGGGTTGCATATGGAGATAGGGTTG
CCTGATGTGGAAGGACGGACGGCTATTTACTCGCATCATCTTGCACGACT
GCCTTTGTGCTTTGATGAGGCTGATGGGGTAGAAAGCAAGGACTTTGCGT
CTTTATCTAGCTTGGCATCACACATGGCGAGAATGAGCGAGGGGTTATCG
GGCGCGGATATACAGGGGGTCTGTCAAGAGGCGGCCTTGCTGGGCTTGCG
GGAGGATTTGAATCGGAAGCATTTGCTGCCTAGGCACATCTTGCGGGCAT
TGGCGGTGCTACGAGGGGGCTGACTAAGTCTTAAAAATAACAAAGAAATT
ATTAGATGAGTCGATTGAATTATCCAGGCGCTTTGTTATGCTTTGC

Coding sequence (CDS) from alignment at scaffold_10:780240..782085+

>mRNA_4512 ID=mRNA_4512|Name=jgi.p|Nanoce1779_2|589375|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_10:780240..782085+ (Nannochloropsis oceanica)
ATGCTTCTTGAGTGCTTCCATCGGCCCGCATTTGCTTGTGTGTTTATCGT
AGGCATCGCGGGGGATGCCTCGGTCCTTGACCCCAGCCTCCTGCAACCTG
GTCGACTGGAAGTCACTTTCAGCCTAATCGCACCCACACTGCAGCAGCGT
CAAGCCATACTCCAAAATCTACTTTACAGACTGGGCACAACACTTAAAGT
GAAAGGCAAGGGAGACAATGTTTCGCGGCAGCATCTGCTCGAGAGTCTCA
CACGTGGAACTCGGGGCTTTAGTAGCGCGGACCTCTCCCGCCTCTGCACC
GAAGCCTTGGCCTCCGCCCACAGCCGTAGCAACACAACTACCGATACTCT
AAGTATTCAAGAAGAAGACTGGGAATCTGCATTGGAGAGCGCACGTCCAA
TTGACATTCCTTGGTCTTCGCCTTCAGGGGCCCAATTATCCGACCTGGCA
GGGATGGACGACATCATTCGCACCCTCTCGGAAGCTGTTCTCCTTCCTCT
CTCCCGCCCCGATACTCTCGCAGCCATGGGTGTACCTCGCGTGTCGTTTG
GCGTGCTGTTACATGGGCCCTCAGGCACGGGGAAGAGCTCCTTGGGCCGA
GCACTGGCGACGGCGGCGAGGCCCTATGCGAGTTTCTTGGCCGTCGAGTG
CCCTGAGTTGGTTAACAAGGTGGTGGGAGAGTCCGAGAGGGCGGTGGCCC
GATTATTTCAAACAGCCAGACAAGTGGCGCCATGTATTTTATTTTTGGAC
CACGTGGAAGCGATAGCGGGCAAGAGGGGATTTGACTCGTCGACGGAGCA
GACGATGGATCGGTTGCTTAGCACTTTGTTGGTAGAGATGGATGGGCTTG
GAAGTGGAGGTGAAGGAGAAGGAGGAGGGAATCAGCTTATTGTCGTAGTG
GCAGTGACGAATCATTTCTCCATGCTGGATGACGCGATCTTGAGACCGGG
GCGGCTGGGGTTGCATATGGAGATAGGGTTGCCTGATGTGGAAGGACGGA
CGGCTATTTACTCGCATCATCTTGCACGACTGCCTTTGTGCTTTGATGAG
GCTGATGGGGTAGAAAGCAAGGACTTTGCGTCTTTATCTAGCTTGGCATC
ACACATGGCGAGAATGAGCGAGGGGTTATCGGGCGCGGATATACAGGGGG
TCTGTCAAGAGGCGGCCTTGCTGGGCTTGCGGGAGGATTTGAATCGGAAG
CATTTGCTGCCTAGGCACATCTTGCGGGCATTGGCGGTGCTACGAGGGGG
CTGA

Synonyms

Publications