jgi.p|Nanoce1779_2|528075, mRNA_4511 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528075
Unique NamemRNA_4511
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length681
Alignment locationscaffold_10:778896..779576 +

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Properties
Property NameValue
TranscriptId528161
TrackFilteredModels2
ProteinId528075
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:778896..779576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528075gene_4511Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528075mRNA_4511-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4511CDS_4511Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4511 ID=mRNA_4511|Name=jgi.p|Nanoce1779_2|528075|organism=Nannochloropsis oceanica|type=mRNA|length=681bp
ATGCAGGCCAAGATTGTCGAGTTGGCCTCTGAGGACAATGTGTCGCCTTA
CAACGAGGAAGACATGTTGAACCGGGTGCTGGTCGCGCGGAACCTACACG
TTGCCGAGGCCTTTCACATGTGGCAGAACATCGTCGCATGGCGGAAGCAG
TACCAGCCCGAGTTCCTGTCGGAGGAAGAGGCGGCGCCCTACTTGAAACT
TGGTGTGATTTCCACATGTGGACCTGACGTGAATGGTCGCCCGTGCATTT
ACGCCTTGAACCGTAATCATTTAATTGACGCAGAGCACCACGATAGGAAT
CTGAGGACGATTGTAAACGTCCTTGAGAAGACAACGGTGGAGTCCTCGAA
GATTGCCGATGGATTTATTGCCGTTATCATTGACCAGGAAGGGGTCGGAA
GGAAGAACATGGACACCCACCTGTTTATTGGCAAGCCTGGCCTGGTGCAG
GTGCTGCAAGAGTATTATCCTGAACGTTTAGGCTCGTGCTATATAATCCA
TACATCATGGATTTTTCGATTGATGTGGGCGATAATCTCACCCTTTTTAG
ACGATAAAACAAGGAAGAAGGTGCATGTCCTGCCGCACACGGAGGACTTG
CTTCAGTACTTTTCCTTAGACAGGCTTCCGGCCGATTTGCAGGCGAAGAT
GAATGCAGCAGCGGCGAAGGCGAAGAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|528075

>mRNA_4511-protein ID=mRNA_4511-protein|Name=jgi.p|Nanoce1779_2|528075|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MQAKIVELASEDNVSPYNEEDMLNRVLVARNLHVAEAFHMWQNIVAWRKQ
YQPEFLSEEEAAPYLKLGVISTCGPDVNGRPCIYALNRNHLIDAEHHDRN
LRTIVNVLEKTTVESSKIADGFIAVIIDQEGVGRKNMDTHLFIGKPGLVQ
VLQEYYPERLGSCYIIHTSWIFRLMWAIISPFLDDKTRKKVHVLPHTEDL
LQYFSLDRLPADLQAKMNAAAAKAKK*
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mRNA from alignment at scaffold_10:778896..779576+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4511 ID=mRNA_4511|Name=jgi.p|Nanoce1779_2|528075|organism=Nannochloropsis oceanica|type=mRNA|length=681bp|location=Sequence derived from alignment at scaffold_10:778896..779576+ (Nannochloropsis oceanica)
ATGCAGGCCAAGATTGTCGAGTTGGCCTCTGAGGACAATGTGTCGCCTTA
CAACGAGGAAGACATGTTGAACCGGGTGCTGGTCGCGCGGAACCTACACG
TTGCCGAGGCCTTTCACATGTGGCAGAACATCGTCGCATGGCGGAAGCAG
TACCAGCCCGAGTTCCTGTCGGAGGAAGAGGCGGCGCCCTACTTGAAACT
TGGTGTGATTTCCACATGTGGACCTGACGTGAATGGTCGCCCGTGCATTT
ACGCCTTGAACCGTAATCATTTAATTGACGCAGAGCACCACGATAGGAAT
CTGAGGACGATTGTAAACGTCCTTGAGAAGACAACGGTGGAGTCCTCGAA
GATTGCCGATGGATTTATTGCCGTTATCATTGACCAGGAAGGGGTCGGAA
GGAAGAACATGGACACCCACCTGTTTATTGGCAAGCCTGGCCTGGTGCAG
GTGCTGCAAGAGTATTATCCTGAACGTTTAGGCTCGTGCTATATAATCCA
TACATCATGGATTTTTCGATTGATGTGGGCGATAATCTCACCCTTTTTAG
ACGATAAAACAAGGAAGAAGGTGCATGTCCTGCCGCACACGGAGGACTTG
CTTCAGTACTTTTCCTTAGACAGGCTTCCGGCCGATTTGCAGGCGAAGAT
GAATGCAGCAGCGGCGAAGGCGAAGAAGTAG
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Coding sequence (CDS) from alignment at scaffold_10:778896..779576+

>mRNA_4511 ID=mRNA_4511|Name=jgi.p|Nanoce1779_2|528075|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_10:778896..779576+ (Nannochloropsis oceanica)
ATGCAGGCCAAGATTGTCGAGTTGGCCTCTGAGGACAATGTGTCGCCTTA
CAACGAGGAAGACATGTTGAACCGGGTGCTGGTCGCGCGGAACCTACACG
TTGCCGAGGCCTTTCACATGTGGCAGAACATCGTCGCATGGCGGAAGCAG
TACCAGCCCGAGTTCCTGTCGGAGGAAGAGGCGGCGCCCTACTTGAAACT
TGGTGTGATTTCCACATGTGGACCTGACGTGAATGGTCGCCCGTGCATTT
ACGCCTTGAACCGTAATCATTTAATTGACGCAGAGCACCACGATAGGAAT
CTGAGGACGATTGTAAACGTCCTTGAGAAGACAACGGTGGAGTCCTCGAA
GATTGCCGATGGATTTATTGCCGTTATCATTGACCAGGAAGGGGTCGGAA
GGAAGAACATGGACACCCACCTGTTTATTGGCAAGCCTGGCCTGGTGCAG
GTGCTGCAAGAGTATTATCCTGAACGTTTAGGCTCGTGCTATATAATCCA
TACATCATGGATTTTTCGATTGATGTGGGCGATAATCTCACCCTTTTTAG
ACGATAAAACAAGGAAGAAGGTGCATGTCCTGCCGCACACGGAGGACTTG
CTTCAGTACTTTTCCTTAGACAGGCTTCCGGCCGATTTGCAGGCGAAGAT
GAATGCAGCAGCGGCGAAGGCGAAGAAGTAG
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Synonyms
Publications