jgi.p|Nanoce1779_2|577358, mRNA_451 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577358
Unique Name	mRNA_451
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1763
Alignment location	scaffold_3:1111558..1113320 +

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Properties


Property Name	Value
TranscriptId	577444
Track	FilteredModels2
ProteinId	577358

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1111558..1113320 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577358	gene_451	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577358	mRNA_451-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_451	CDS_451	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1111558..1113320+
coding sequence from alignment at scaffold_3:1111558..1113320+

mRNA sequence

>mRNA_451 ID=mRNA_451|Name=jgi.p|Nanoce1779_2|577358|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp
ACAGTTCTTAGAGAAGCTACCCAGCGATGAAGACAGCTAATGCCGCTGCC
GCCGCCGCCACGCTGGCATTGTCTGCAGCCGCTGTGCGAGGCTTTGTGCT
ACCCACGAGACCGATGTCGAGATCTCAGCACCATTTGCGAAGGCCTCTGG
CCTCGGTACGTCTGACTCAAGACGTCGAGGTTCTACAATCGGTGGTCCAG
GCCCCTGAAATGCAAGAAGGTAGCAGCAGCACCAGCCCCGATCTCGATCT
ATTGCCCCTTACCCTCGAGCCAGCCTCTTTCTCCATTGACCCCGCCTCCA
TCGAAACGCGCGTTAAACGCAAGGGGCCGCCCCCGCCAGTGGTCGTGGCA
GCAGGCGACGTGTTGGAAAGCACATGGGTGCACCGCATGCACGTCGCAAC
ACACTACATCGTCACCCTAGTCGCTCTGCAGCAAGTAGCTACAAGCTATG
TGGTCAAGGGCGGGGCTACCCCCGCAGACTTGGCGATGTTGATGGCTACA
ATGGCATTCTCACTCGTTTTTTCTGATTTCTTCAGCGGAGTTTTTCACTG
GTCGGTGGACAACTACGGCTCGGGTAAGACACCTGTACTGGGGGCCGTGA
TAGAGGCTTTCCAGGGACATCACGATGCGCCTTGGACTATTACTTACCGG
GAATTTTGCAACAACGTGCACAAGATTACTAAGATAACCATTCCGGCGAT
GATGGCTGTGGTCCTGCTGCATCCAAGCAACCCCCTCTTGACCCTTTTTG
CGATCTTGTTTTTCAATCTGCAGGTGCTTAGCCAGGAATTTCATAAGATC
TCGCACTTGACCAAGCCCCCTGCATGGGCCGTGATGTTGCAGGACATGGG
CTTGATAATTAGCAGGAAAGAGCATGGCCAGCATCATTCGAATCCGTTTG
AGAGCAACTATTGTATTTTGACTGGGACGTGTAATTCCTTTTTGGATGAG
AGTGGGCTCTTCCGGGTCTTGGAAAGGGGGGTTTACGAGGTGACCGGGGT
GATGCCCAACTGCTGGAAGCTGGGCGGGCCGAAATTTCAGGCGGAGATGC
TCTTGAGATCACGTGGAGGGGCGGACGTGGCGACGGTGGAGACGAAGAAG
GAGGAGGAAAAATTGCAATGAAGAGGAGGGAGGGAAAATAGAGGGAGTCT
GGGAATAATGGATGGGGAAGGGAGGAGCGCATGTAGCATGACAAGACACT
TATACGAGTGTAAGTCTCTCGGGAAGAATTAGAATGGAGGAAAACACGGG
GCTCATGAAAGATGGTGAGGAATAGAGTGCGTGGGTACATTACAGGAAGG
TACGACAACAAATGCAACGAAATGTAGATCCATTCAGACAGGAATATATG
TACTATTGAAAGGTAACATCATACAGTGCCTGTACTTGAGTTGCCACACA
CGTGTGGCTGCACACGGACAGGCGTTCGTGGATTTGTGTGGGTAATTGCG
TGTATTGTGTCACAGCGGCTAACGCAGCAAGTCTTATATAAAGGAAAGCA
CTAATAATCCATAAGCTGCATCTACTTTCTTGTACTTTGGTGAAGGAAGG
GCGGACGGACGGCGTAGATTGACCCTCTATTGAAGGGAAACGGTGATGTG
TAACGATTGAAGGCGAGGCGTGAGACTCGGGGAATTGTTACAATTCCCGA
TATCTCTCATCGGGGGGGGGAAGACATAACAAGAGAGCACGAAAAGCAAT
GACTTAAGCAGTGGGTGAGGACTCAGTCACAGCTGTTCCGATACTTTTCC
TTTTTCCCTTTCT

protein sequence of jgi.p|Nanoce1779_2|577358

>mRNA_451-protein ID=mRNA_451-protein|Name=jgi.p|Nanoce1779_2|577358|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MKTANAAAAAATLALSAAAVRGFVLPTRPMSRSQHHLRRPLASVRLTQDV
EVLQSVVQAPEMQEGSSSTSPDLDLLPLTLEPASFSIDPASIETRVKRKG
PPPPVVVAAGDVLESTWVHRMHVATHYIVTLVALQQVATSYVVKGGATPA
DLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHD
APWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPLLTLFAILFFNLQV
LSQEFHKISHLTKPPAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTG
TCNSFLDESGLFRVLERGVYEVTGVMPNCWKLGGPKFQAEMLLRSRGGAD
VATVETKKEEEKLQ*

mRNA from alignment at scaffold_3:1111558..1113320+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_451 ID=mRNA_451|Name=jgi.p|Nanoce1779_2|577358|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp|location=Sequence derived from alignment at scaffold_3:1111558..1113320+ (Nannochloropsis oceanica)
ACAGTTCTTAGAGAAGCTACCCAGCGATGAAGACAGCTAATGCCGCTGCC
GCCGCCGCCACGCTGGCATTGTCTGCAGCCGCTGTGCGAGGCTTTGTGCT
ACCCACGAGACCGATGTCGAGATCTCAGCACCATTTGCGAAGGCCTCTGG
CCTCGGTACGTCTGACTCAAGACGTCGAGGTTCTACAATCGGTGGTCCAG
GCCCCTGAAATGCAAGAAGGTAGCAGCAGCACCAGCCCCGATCTCGATCT
ATTGCCCCTTACCCTCGAGCCAGCCTCTTTCTCCATTGACCCCGCCTCCA
TCGAAACGCGCGTTAAACGCAAGGGGCCGCCCCCGCCAGTGGTCGTGGCA
GCAGGCGACGTGTTGGAAAGCACATGGGTGCACCGCATGCACGTCGCAAC
ACACTACATCGTCACCCTAGTCGCTCTGCAGCAAGTAGCTACAAGCTATG
TGGTCAAGGGCGGGGCTACCCCCGCAGACTTGGCGATGTTGATGGCTACA
ATGGCATTCTCACTCGTTTTTTCTGATTTCTTCAGCGGAGTTTTTCACTG
GTCGGTGGACAACTACGGCTCGGGTAAGACACCTGTACTGGGGGCCGTGA
TAGAGGCTTTCCAGGGACATCACGATGCGCCTTGGACTATTACTTACCGG
GAATTTTGCAACAACGTGCACAAGATTACTAAGATAACCATTCCGGCGAT
GATGGCTGTGGTCCTGCTGCATCCAAGCAACCCCCTCTTGACCCTTTTTG
CGATCTTGTTTTTCAATCTGCAGGTGCTTAGCCAGGAATTTCATAAGATC
TCGCACTTGACCAAGCCCCCTGCATGGGCCGTGATGTTGCAGGACATGGG
CTTGATAATTAGCAGGAAAGAGCATGGCCAGCATCATTCGAATCCGTTTG
AGAGCAACTATTGTATTTTGACTGGGACGTGTAATTCCTTTTTGGATGAG
AGTGGGCTCTTCCGGGTCTTGGAAAGGGGGGTTTACGAGGTGACCGGGGT
GATGCCCAACTGCTGGAAGCTGGGCGGGCCGAAATTTCAGGCGGAGATGC
TCTTGAGATCACGTGGAGGGGCGGACGTGGCGACGGTGGAGACGAAGAAG
GAGGAGGAAAAATTGCAATGAAGAGGAGGGAGGGAAAATAGAGGGAGTCT
GGGAATAATGGATGGGGAAGGGAGGAGCGCATGTAGCATGACAAGACACT
TATACGAGTGTAAGTCTCTCGGGAAGAATTAGAATGGAGGAAAACACGGG
GCTCATGAAAGATGGTGAGGAATAGAGTGCGTGGGTACATTACAGGAAGG
TACGACAACAAATGCAACGAAATGTAGATCCATTCAGACAGGAATATATG
TACTATTGAAAGGTAACATCATACAGTGCCTGTACTTGAGTTGCCACACA
CGTGTGGCTGCACACGGACAGGCGTTCGTGGATTTGTGTGGGTAATTGCG
TGTATTGTGTCACAGCGGCTAACGCAGCAAGTCTTATATAAAGGAAAGCA
CTAATAATCCATAAGCTGCATCTACTTTCTTGTACTTTGGTGAAGGAAGG
GCGGACGGACGGCGTAGATTGACCCTCTATTGAAGGGAAACGGTGATGTG
TAACGATTGAAGGCGAGGCGTGAGACTCGGGGAATTGTTACAATTCCCGA
TATCTCTCATCGGGGGGGGGAAGACATAACAAGAGAGCACGAAAAGCAAT
GACTTAAGCAGTGGGTGAGGACTCAGTCACAGCTGTTCCGATACTTTTCC
TTTTTCCCTTTCT

Coding sequence (CDS) from alignment at scaffold_3:1111558..1113320+

>mRNA_451 ID=mRNA_451|Name=jgi.p|Nanoce1779_2|577358|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_3:1111558..1113320+ (Nannochloropsis oceanica)
ATGAAGACAGCTAATGCCGCTGCCGCCGCCGCCACGCTGGCATTGTCTGC
AGCCGCTGTGCGAGGCTTTGTGCTACCCACGAGACCGATGTCGAGATCTC
AGCACCATTTGCGAAGGCCTCTGGCCTCGGTACGTCTGACTCAAGACGTC
GAGGTTCTACAATCGGTGGTCCAGGCCCCTGAAATGCAAGAAGGTAGCAG
CAGCACCAGCCCCGATCTCGATCTATTGCCCCTTACCCTCGAGCCAGCCT
CTTTCTCCATTGACCCCGCCTCCATCGAAACGCGCGTTAAACGCAAGGGG
CCGCCCCCGCCAGTGGTCGTGGCAGCAGGCGACGTGTTGGAAAGCACATG
GGTGCACCGCATGCACGTCGCAACACACTACATCGTCACCCTAGTCGCTC
TGCAGCAAGTAGCTACAAGCTATGTGGTCAAGGGCGGGGCTACCCCCGCA
GACTTGGCGATGTTGATGGCTACAATGGCATTCTCACTCGTTTTTTCTGA
TTTCTTCAGCGGAGTTTTTCACTGGTCGGTGGACAACTACGGCTCGGGTA
AGACACCTGTACTGGGGGCCGTGATAGAGGCTTTCCAGGGACATCACGAT
GCGCCTTGGACTATTACTTACCGGGAATTTTGCAACAACGTGCACAAGAT
TACTAAGATAACCATTCCGGCGATGATGGCTGTGGTCCTGCTGCATCCAA
GCAACCCCCTCTTGACCCTTTTTGCGATCTTGTTTTTCAATCTGCAGGTG
CTTAGCCAGGAATTTCATAAGATCTCGCACTTGACCAAGCCCCCTGCATG
GGCCGTGATGTTGCAGGACATGGGCTTGATAATTAGCAGGAAAGAGCATG
GCCAGCATCATTCGAATCCGTTTGAGAGCAACTATTGTATTTTGACTGGG
ACGTGTAATTCCTTTTTGGATGAGAGTGGGCTCTTCCGGGTCTTGGAAAG
GGGGGTTTACGAGGTGACCGGGGTGATGCCCAACTGCTGGAAGCTGGGCG
GGCCGAAATTTCAGGCGGAGATGCTCTTGAGATCACGTGGAGGGGCGGAC
GTGGCGACGGTGGAGACGAAGAAGGAGGAGGAAAAATTGCAATGA

Synonyms

Publications