jgi.p|Nanoce1779_2|589367, mRNA_4509 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589367
Unique NamemRNA_4509
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length697
Alignment locationscaffold_10:772337..773033 +

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Properties
Property NameValue
TranscriptId589453
TrackFilteredModels2
ProteinId589367
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:772337..773033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589367gene_4509Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589367mRNA_4509-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4509CDS_4509Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4509 ID=mRNA_4509|Name=jgi.p|Nanoce1779_2|589367|organism=Nannochloropsis oceanica|type=mRNA|length=697bp
TAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTA
GTAGTAGTAGTAGTAATAGTAATACTAATAGTAGCAGCAGTAGTAGTAGT
AGTAGTAGCAACAGTAGTAGCAGCAGCAGTAGTAGTGTGGTTGCTGATGC
TCTTGGTGCGGCCGGTGTTGGAAGAGGCATGGCGTCCTCTTCCTGGACGT
GGGAAGGGAAGGTGATGAGGGTGGAGGGATTGGAGAAACAGGGCGAGGAA
CGGAATGGAGATGAGGAGGAGGAGGATCAGGGACCTAAGAGGCGGCGAAC
TGCTGCTGCTGCGTTGCCTAGCAGCTTTGCCAACGGCAGCACCAGCAGCA
GCAGCAGCAGCAGCAATAGTGCAGCAAAGGCTCGCAAGCAGGAAATCGTT
GAGCTACTGGATTAAGATGGTTCGAGTGAGAAGGGCAACGGCGGCAGCAG
CGACGAGGACTGAAATAGAAGGAATAAGAGGAATGAAGGACAACAACAAT
AAGAAAATAGCGTGGCTGGATGAGGTGGAGAAATGGATGAGTGGTTGAAT
GAAAAACAAAAATGTGCATGACAGCAGCAGTGCTGGGAACTATAAAATCG
TCATATACCACGCGAGGCGTCACGTGTGAATGGCCCACAAAACAGCAAAC
AAAGTAGCGAACCAAAAGACAAACGAAAAAAAGAAAACCACTGATCG
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protein sequence of jgi.p|Nanoce1779_2|589367

>mRNA_4509-protein ID=mRNA_4509-protein|Name=jgi.p|Nanoce1779_2|589367|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MEMRRRRIRDLRGGELLLLRCLAALPTAAPAAAAAAAIVQQRLASRKSLS
YWIKMVRVRRATAAAATRTEIEGIRGMKDNNNKKIAWLDEVEKWMSG*
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mRNA from alignment at scaffold_10:772337..773033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4509 ID=mRNA_4509|Name=jgi.p|Nanoce1779_2|589367|organism=Nannochloropsis oceanica|type=mRNA|length=697bp|location=Sequence derived from alignment at scaffold_10:772337..773033+ (Nannochloropsis oceanica)
TAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTA
GTAGTAGTAGTAGTAATAGTAATACTAATAGTAGCAGCAGTAGTAGTAGT
AGTAGTAGCAACAGTAGTAGCAGCAGCAGTAGTAGTGTGGTTGCTGATGC
TCTTGGTGCGGCCGGTGTTGGAAGAGGCATGGCGTCCTCTTCCTGGACGT
GGGAAGGGAAGGTGATGAGGGTGGAGGGATTGGAGAAACAGGGCGAGGAA
CGGAATGGAGATGAGGAGGAGGAGGATCAGGGACCTAAGAGGCGGCGAAC
TGCTGCTGCTGCGTTGCCTAGCAGCTTTGCCAACGGCAGCACCAGCAGCA
GCAGCAGCAGCAGCAATAGTGCAGCAAAGGCTCGCAAGCAGGAAATCGTT
GAGCTACTGGATTAAGATGGTTCGAGTGAGAAGGGCAACGGCGGCAGCAG
CGACGAGGACTGAAATAGAAGGAATAAGAGGAATGAAGGACAACAACAAT
AAGAAAATAGCGTGGCTGGATGAGGTGGAGAAATGGATGAGTGGTTGAAT
GAAAAACAAAAATGTGCATGACAGCAGCAGTGCTGGGAACTATAAAATCG
TCATATACCACGCGAGGCGTCACGTGTGAATGGCCCACAAAACAGCAAAC
AAAGTAGCGAACCAAAAGACAAACGAAAAAAAGAAAACCACTGATCG
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Coding sequence (CDS) from alignment at scaffold_10:772337..773033+

>mRNA_4509 ID=mRNA_4509|Name=jgi.p|Nanoce1779_2|589367|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_10:772337..773033+ (Nannochloropsis oceanica)
ATGGAGATGAGGAGGAGGAGGATCAGGGACCTAAGAGGCGGCGAACTGCT
GCTGCTGCGTTGCCTAGCAGCTTTGCCAACGGCAGCACCAGCAGCAGCAG
CAGCAGCAGCAATAGTGCAGCAAAGGCTCGCAAGCAGGAAATCGTTGAGC
TACTGGATTAAGATGGTTCGAGTGAGAAGGGCAACGGCGGCAGCAGCGAC
GAGGACTGAAATAGAAGGAATAAGAGGAATGAAGGACAACAACAATAAGA
AAATAGCGTGGCTGGATGAGGTGGAGAAATGGATGAGTGGTTGA
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Synonyms
Publications