jgi.p|Nanoce1779_2|589366, mRNA_4508 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589366
Unique NamemRNA_4508
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length365
Alignment locationscaffold_10:771925..772289 -

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Properties
Property NameValue
TranscriptId589452
TrackFilteredModels2
ProteinId589366
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:771925..772289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589366gene_4508Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589366mRNA_4508-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4508CDS_4508Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4508 ID=mRNA_4508|Name=jgi.p|Nanoce1779_2|589366|organism=Nannochloropsis oceanica|type=mRNA|length=365bp
CGATCGATAATCTTCCAAGGTCGGAGGAGTGCACGATGTCAATACCGGAA
GCAACTGAACCCCCTCTCCTCCTCCTCCTCCTCCTCTTATTTCTCCTCCT
CCTCTATCAGCACCAGCACGAGGCAGCCGCAAACCAAATACCCCCTCAAG
TGTGGCCAAGCGAGGACTTATCCTTCCCATCACCACCCCTGCCGCCTGTC
TATCCCTTTCCAACAACGCCCGAAATGCCATCGGCGTCATTCCAAGAATG
TCAGTCACCAAACTATCCCCCAACTTCACCTGAACGTCCTCCCCTCCTCC
TTCCCTCCCTCCTCCTCCTCCACTATTGATCATTACCGTTAGTCTCGCCC
CATATTTTTTTGTCG
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protein sequence of jgi.p|Nanoce1779_2|589366

>mRNA_4508-protein ID=mRNA_4508-protein|Name=jgi.p|Nanoce1779_2|589366|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MSIPEATEPPLLLLLLLLFLLLLYQHQHEAAANQIPPQVWPSEDLSFPSP
PLPPVYPFPTTPEMPSASFQECQSPNYPPTSPERPPLLLPSLLLLHY*
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mRNA from alignment at scaffold_10:771925..772289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4508 ID=mRNA_4508|Name=jgi.p|Nanoce1779_2|589366|organism=Nannochloropsis oceanica|type=mRNA|length=365bp|location=Sequence derived from alignment at scaffold_10:771925..772289- (Nannochloropsis oceanica)
CGATCGATAATCTTCCAAGGTCGGAGGAGTGCACGATGTCAATACCGGAA
GCAACTGAACCCCCTCTCCTCCTCCTCCTCCTCCTCTTATTTCTCCTCCT
CCTCTATCAGCACCAGCACGAGGCAGCCGCAAACCAAATACCCCCTCAAG
TGTGGCCAAGCGAGGACTTATCCTTCCCATCACCACCCCTGCCGCCTGTC
TATCCCTTTCCAACAACGCCCGAAATGCCATCGGCGTCATTCCAAGAATG
TCAGTCACCAAACTATCCCCCAACTTCACCTGAACGTCCTCCCCTCCTCC
TTCCCTCCCTCCTCCTCCTCCACTATTGATCATTACCGTTAGTCTCGCCC
CATATTTTTTTGTCG
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Coding sequence (CDS) from alignment at scaffold_10:771925..772289-

>mRNA_4508 ID=mRNA_4508|Name=jgi.p|Nanoce1779_2|589366|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_10:771925..772289- (Nannochloropsis oceanica)
ATGTCAATACCGGAAGCAACTGAACCCCCTCTCCTCCTCCTCCTCCTCCT
CTTATTTCTCCTCCTCCTCTATCAGCACCAGCACGAGGCAGCCGCAAACC
AAATACCCCCTCAAGTGTGGCCAAGCGAGGACTTATCCTTCCCATCACCA
CCCCTGCCGCCTGTCTATCCCTTTCCAACAACGCCCGAAATGCCATCGGC
GTCATTCCAAGAATGTCAGTCACCAAACTATCCCCCAACTTCACCTGAAC
GTCCTCCCCTCCTCCTTCCCTCCCTCCTCCTCCTCCACTATTGA
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Synonyms
Publications