Properties
| Property Name | Value |
|---|
| TranscriptId | 555436 |
| Track | FilteredModels2 |
| ProteinId | 555350 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:768627..771195 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4506 ID=mRNA_4506|Name=jgi.p|Nanoce1779_2|555350|organism=Nannochloropsis oceanica|type=mRNA|length=2480bp
ACAGGCAGAAACACATACCAAACATCCCTGTATAAAGCTGTCACAACCTA
CGGCTGGAAATGCGCGGCGTCCGAATTCTCTTGCACAGGCCATGGACTCT
AAGCCGAGACGCGAACAGAAACGCACCCATGCTTTGTCAAGGCATCGGTT
CCATGCGACCACTTGAAAGACAATCATCTGCTATCCATCGACACCACATT
TCCCAAAGAGGTTTTACTGTCGGTCCTGGCAGAGACAACAAAAAGGGGAC
CTACCTCCATTCCCATGCCGTGGACAAGGCCGAGGATGACGAGTGCACGA
TTCGGCAGCCGAGCATGGAGACTGAAAAGGACGTGGGACTGGCCCTGCGC
GAGGTACAGCAGCTTTATCAGCAGGGGCAGTACAGTGAAGCCTTGCAAGT
CTCCTTGGGCATGCGAGACTGGCTGGAACGAGAGCTGGGGGAAGATCACC
CCGTTTATGCTTCGTGCTTGAACAACATTGCTTTGATGTATAAAATGACG
AATGAATTGGAGGACGCGGTACATTATTACGCGATGGCCCTTGACAAATA
CAAACGCACCGTCGGGACCGCCCACCGGTCGTACGCTGCCACACTCAACA
ACTTGGGATTGGTCTTCTTGCTGCAAGCACAGCAAGCCGAGGCTAGCGGC
GGAAAAAAGCTTCATGCAATGGCATCCTTGGAAAGCGCAGAAGCAACGCT
GCGGGAAGCCCTGACCATTCGTACGCAGGTCTTGGAGGAGGACGATCCGG
CGTTGCTAAGCACGAGGAGTAACCTGGCGTCGGTCTTGCAGCGTACGGGC
CGCGGAGCGGAGGCGGAGGAGATGTTGCGCACGACATTGGTGTTGGTGTT
AGAACGGACGCGGGGTAAGAAGGAGTCCCCCGAAGTGGCGACTGCCATGA
ACAACCTTGGGTATTTGCTCAAGGCGGAGGGGCGGTGGGAAGAGGCTCGG
GTTTTTTATAAGGATGCATTGCGCATTCGCCGGGCCATTTTCCTCCCTCA
TCACCCCCAAGTCATTGTTTCAATGAATAATTTGGCGGAGTTGTGTTTGA
TTATCCCGGGCTCGGAGGCCGAGGGCAAGGCGCTGCAGGAGGAGATTTTG
GGGTTGCTGAGTGTAAATGAGAGTGGGCCTGGTGGTGGAGGGAATGGATA
TGATGGAAAGGAAACTCGGCAAAAGTAATTCAATTGACAGAACTAGTTTT
CCCACATGAAGGACGGTGTTTAGGGTGTTGGTCTCCTTTCATTAAAATAT
GGGGCTAGAGAGTGCGGGAAGTTTTGTCATATATAACTACCCAGGCCGGC
GAGCCCGACTGATTTCTTTGAGAAAAAGATGAGGAGAAAGAGATTTCGGA
TATGTGAGCATCGATGTTTTTTCTTTTGTTACACAGATTGCATATCAAGT
ATTGCTTATTCAGAGAAAGAGGGAGGAGAGGAGCAGGCCGGGGAGGTTGA
GGGGACTTCCCCCTCCACCCCCCTCCGACAGACGAGCAGATGGGCATTCA
CACGCGCATCTGAACTCTATCCAAAGCTATCATACTCCGATCGACTAAAG
GCTTGATCATGGTGTTCATCGATATCTTGGAAAAAGCAACTGGGCTTCAC
GGTGCCTCGCCCACACTCCATGGAAATGTTGAGCGATTGCGTTCACGTAC
CTGCACGCCTTACGTACACAGGCGCGTCTCATGGGCAAGGAAGCGACGAT
CATGCCGCTGCGGATGTGAAGGAAGCAACGCCCCCGCGTCTCCATCTTCA
CTAATACACTCTGCAAGCAGACTACCCTCTCCCTCCTCCCTCATCCCCTT
CCTCCTCCATCCCTAAAGCATGACCGATGTCGTCGCCGAGGCCCTGGCGG
GGCTTGGCTTGAAATTACGGCGTGATTGGTTGGAAGAATGCCTCCACAAT
ATCCCACCGCCTGCTGGTGGCCGCGGTGGCAATGACGATCAAACGCTGGG
CTACGTGTACGATCGCTTTTTGCACTCTGACTTACGTGTATCAGGTGCCG
GCTGCTTCCCGTCTAATCTGGCCACGGTAAGGGACGAGCACCTTCGAGGC
CCGATGATCGTGCAGATGGATGCTCTCAAGAATATTGCCTCCTCAGCGAT
GGATCAAAAGGAAGGCAAAGGGGGCCGGATGCTTCTTTTGGCCCTGTCCG
ATGGGGTCCAGCTCGCAGTAGGGTTGGAATACAGACACATCGCTGCGTTT
CAAATGAAGCCACCACCACCCATGGGCCTCAAAATTGCTTTACGTAATGT
GAGAGTAAAGGAAGGCATGCTGCTCCTGACCCGCGAAACGGTGCAAATTT
TGGGGGGTGACAATGGCAAACCTCCTCTGCCGGAGGTTGAGGCTCCGGGC
TCTGAAGAAAAGGCCCGATTAAAGGCAGCGGGCCGCATATTATCTGTCCG
TTCACCTCCTTTGCCTTTGCATCGGCGAGGGCGGGTGCAGCAGCAACAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGC back to topprotein sequence of jgi.p|Nanoce1779_2|555350 >mRNA_4506-protein ID=mRNA_4506-protein|Name=jgi.p|Nanoce1779_2|555350|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MRGVRILLHRPWTLSRDANRNAPMLCQGIGSMRPLERQSSAIHRHHISQR
GFTVGPGRDNKKGTYLHSHAVDKAEDDECTIRQPSMETEKDVGLALREVQ
QLYQQGQYSEALQVSLGMRDWLERELGEDHPVYASCLNNIALMYKMTNEL
EDAVHYYAMALDKYKRTVGTAHRSYAATLNNLGLVFLLQAQQAEASGGKK
LHAMASLESAEATLREALTIRTQVLEEDDPALLSTRSNLASVLQRTGRGA
EAEEMLRTTLVLVLERTRGKKESPEVATAMNNLGYLLKAEGRWEEARVFY
KDALRIRRAIFLPHHPQVIVSMNNLAELCLIIPGSEAEGKALQEEILGLL
SVNESGPGGGGNGYDGKETRQK* back to topmRNA from alignment at scaffold_10:768627..771195+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4506 ID=mRNA_4506|Name=jgi.p|Nanoce1779_2|555350|organism=Nannochloropsis oceanica|type=mRNA|length=2569bp|location=Sequence derived from alignment at scaffold_10:768627..771195+ (Nannochloropsis oceanica)
ACAGGCAGAAACACATACCAAACATCCCTGTATAAAGCTGTCACAACCTA
CGGCTGGAAATGCGCGGCGTCCGAATTCTCTTGGTACGTTGAGGGGGAGG
GGAGAGGGGCGCTATTATGGAATAGCCAGCTTTGCACCCTTTCATCATCA
CAAAATCGCCCCCAAACATTAGCACAGGCCATGGACTCTAAGCCGAGACG
CGAACAGAAACGCACCCATGCTTTGTCAAGGCATCGGTTCCATGCGACCA
CTTGAAAGACAATCATCTGCTATCCATCGACACCACATTTCCCAAAGAGG
TTTTACTGTCGGTCCTGGCAGAGACAACAAAAAGGGGACCTACCTCCATT
CCCATGCCGTGGACAAGGCCGAGGATGACGAGTGCACGATTCGGCAGCCG
AGCATGGAGACTGAAAAGGACGTGGGACTGGCCCTGCGCGAGGTACAGCA
GCTTTATCAGCAGGGGCAGTACAGTGAAGCCTTGCAAGTCTCCTTGGGCA
TGCGAGACTGGCTGGAACGAGAGCTGGGGGAAGATCACCCCGTTTATGCT
TCGTGCTTGAACAACATTGCTTTGATGTATAAAATGACGAATGAATTGGA
GGACGCGGTACATTATTACGCGATGGCCCTTGACAAATACAAACGCACCG
TCGGGACCGCCCACCGGTCGTACGCTGCCACACTCAACAACTTGGGATTG
GTCTTCTTGCTGCAAGCACAGCAAGCCGAGGCTAGCGGCGGAAAAAAGCT
TCATGCAATGGCATCCTTGGAAAGCGCAGAAGCAACGCTGCGGGAAGCCC
TGACCATTCGTACGCAGGTCTTGGAGGAGGACGATCCGGCGTTGCTAAGC
ACGAGGAGTAACCTGGCGTCGGTCTTGCAGCGTACGGGCCGCGGAGCGGA
GGCGGAGGAGATGTTGCGCACGACATTGGTGTTGGTGTTAGAACGGACGC
GGGGTAAGAAGGAGTCCCCCGAAGTGGCGACTGCCATGAACAACCTTGGG
TATTTGCTCAAGGCGGAGGGGCGGTGGGAAGAGGCTCGGGTTTTTTATAA
GGATGCATTGCGCATTCGCCGGGCCATTTTCCTCCCTCATCACCCCCAAG
TCATTGTTTCAATGAATAATTTGGCGGAGTTGTGTTTGATTATCCCGGGC
TCGGAGGCCGAGGGCAAGGCGCTGCAGGAGGAGATTTTGGGGTTGCTGAG
TGTAAATGAGAGTGGGCCTGGTGGTGGAGGGAATGGATATGATGGAAAGG
AAACTCGGCAAAAGTAATTCAATTGACAGAACTAGTTTTCCCACATGAAG
GACGGTGTTTAGGGTGTTGGTCTCCTTTCATTAAAATATGGGGCTAGAGA
GTGCGGGAAGTTTTGTCATATATAACTACCCAGGCCGGCGAGCCCGACTG
ATTTCTTTGAGAAAAAGATGAGGAGAAAGAGATTTCGGATATGTGAGCAT
CGATGTTTTTTCTTTTGTTACACAGATTGCATATCAAGTATTGCTTATTC
AGAGAAAGAGGGAGGAGAGGAGCAGGCCGGGGAGGTTGAGGGGACTTCCC
CCTCCACCCCCCTCCGACAGACGAGCAGATGGGCATTCACACGCGCATCT
GAACTCTATCCAAAGCTATCATACTCCGATCGACTAAAGGCTTGATCATG
GTGTTCATCGATATCTTGGAAAAAGCAACTGGGCTTCACGGTGCCTCGCC
CACACTCCATGGAAATGTTGAGCGATTGCGTTCACGTACCTGCACGCCTT
ACGTACACAGGCGCGTCTCATGGGCAAGGAAGCGACGATCATGCCGCTGC
GGATGTGAAGGAAGCAACGCCCCCGCGTCTCCATCTTCACTAATACACTC
TGCAAGCAGACTACCCTCTCCCTCCTCCCTCATCCCCTTCCTCCTCCATC
CCTAAAGCATGACCGATGTCGTCGCCGAGGCCCTGGCGGGGCTTGGCTTG
AAATTACGGCGTGATTGGTTGGAAGAATGCCTCCACAATATCCCACCGCC
TGCTGGTGGCCGCGGTGGCAATGACGATCAAACGCTGGGCTACGTGTACG
ATCGCTTTTTGCACTCTGACTTACGTGTATCAGGTGCCGGCTGCTTCCCG
TCTAATCTGGCCACGGTAAGGGACGAGCACCTTCGAGGCCCGATGATCGT
GCAGATGGATGCTCTCAAGAATATTGCCTCCTCAGCGATGGATCAAAAGG
AAGGCAAAGGGGGCCGGATGCTTCTTTTGGCCCTGTCCGATGGGGTCCAG
CTCGCAGTAGGGTTGGAATACAGACACATCGCTGCGTTTCAAATGAAGCC
ACCACCACCCATGGGCCTCAAAATTGCTTTACGTAATGTGAGAGTAAAGG
AAGGCATGCTGCTCCTGACCCGCGAAACGGTGCAAATTTTGGGGGGTGAC
AATGGCAAACCTCCTCTGCCGGAGGTTGAGGCTCCGGGCTCTGAAGAAAA
GGCCCGATTAAAGGCAGCGGGCCGCATATTATCTGTCCGTTCACCTCCTT
TGCCTTTGCATCGGCGAGGGCGGGTGCAGCAGCAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGC back to topCoding sequence (CDS) from alignment at scaffold_10:768627..771195+ >mRNA_4506 ID=mRNA_4506|Name=jgi.p|Nanoce1779_2|555350|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_10:768627..771195+ (Nannochloropsis oceanica)
ATGCGCGGCGTCCGAATTCTCTTGCACAGGCCATGGACTCTAAGCCGAGA
CGCGAACAGAAACGCACCCATGCTTTGTCAAGGCATCGGTTCCATGCGAC
CACTTGAAAGACAATCATCTGCTATCCATCGACACCACATTTCCCAAAGA
GGTTTTACTGTCGGTCCTGGCAGAGACAACAAAAAGGGGACCTACCTCCA
TTCCCATGCCGTGGACAAGGCCGAGGATGACGAGTGCACGATTCGGCAGC
CGAGCATGGAGACTGAAAAGGACGTGGGACTGGCCCTGCGCGAGGTACAG
CAGCTTTATCAGCAGGGGCAGTACAGTGAAGCCTTGCAAGTCTCCTTGGG
CATGCGAGACTGGCTGGAACGAGAGCTGGGGGAAGATCACCCCGTTTATG
CTTCGTGCTTGAACAACATTGCTTTGATGTATAAAATGACGAATGAATTG
GAGGACGCGGTACATTATTACGCGATGGCCCTTGACAAATACAAACGCAC
CGTCGGGACCGCCCACCGGTCGTACGCTGCCACACTCAACAACTTGGGAT
TGGTCTTCTTGCTGCAAGCACAGCAAGCCGAGGCTAGCGGCGGAAAAAAG
CTTCATGCAATGGCATCCTTGGAAAGCGCAGAAGCAACGCTGCGGGAAGC
CCTGACCATTCGTACGCAGGTCTTGGAGGAGGACGATCCGGCGTTGCTAA
GCACGAGGAGTAACCTGGCGTCGGTCTTGCAGCGTACGGGCCGCGGAGCG
GAGGCGGAGGAGATGTTGCGCACGACATTGGTGTTGGTGTTAGAACGGAC
GCGGGGTAAGAAGGAGTCCCCCGAAGTGGCGACTGCCATGAACAACCTTG
GGTATTTGCTCAAGGCGGAGGGGCGGTGGGAAGAGGCTCGGGTTTTTTAT
AAGGATGCATTGCGCATTCGCCGGGCCATTTTCCTCCCTCATCACCCCCA
AGTCATTGTTTCAATGAATAATTTGGCGGAGTTGTGTTTGATTATCCCGG
GCTCGGAGGCCGAGGGCAAGGCGCTGCAGGAGGAGATTTTGGGGTTGCTG
AGTGTAAATGAGAGTGGGCCTGGTGGTGGAGGGAATGGATATGATGGAAA
GGAAACTCGGCAAAAGTAAATGCGCGGCGTCCGAATTCTCTTGCACAGGC
CATGGACTCTAAGCCGAGACGCGAACAGAAACGCACCCATGCTTTGTCAA
GGCATCGGTTCCATGCGACCACTTGAAAGACAATCATCTGCTATCCATCG
ACACCACATTTCCCAAAGAGGTTTTACTGTCGGTCCTGGCAGAGACAACA
AAAAGGGGACCTACCTCCATTCCCATGCCGTGGACAAGGCCGAGGATGAC
GAGTGCACGATTCGGCAGCCGAGCATGGAGACTGAAAAGGACGTGGGACT
GGCCCTGCGCGAGGTACAGCAGCTTTATCAGCAGGGGCAGTACAGTGAAG
CCTTGCAAGTCTCCTTGGGCATGCGAGACTGGCTGGAACGAGAGCTGGGG
GAAGATCACCCCGTTTATGCTTCGTGCTTGAACAACATTGCTTTGATGTA
TAAAATGACGAATGAATTGGAGGACGCGGTACATTATTACGCGATGGCCC
TTGACAAATACAAACGCACCGTCGGGACCGCCCACCGGTCGTACGCTGCC
ACACTCAACAACTTGGGATTGGTCTTCTTGCTGCAAGCACAGCAAGCCGA
GGCTAGCGGCGGAAAAAAGCTTCATGCAATGGCATCCTTGGAAAGCGCAG
AAGCAACGCTGCGGGAAGCCCTGACCATTCGTACGCAGGTCTTGGAGGAG
GACGATCCGGCGTTGCTAAGCACGAGGAGTAACCTGGCGTCGGTCTTGCA
GCGTACGGGCCGCGGAGCGGAGGCGGAGGAGATGTTGCGCACGACATTGG
TGTTGGTGTTAGAACGGACGCGGGGTAAGAAGGAGTCCCCCGAAGTGGCG
ACTGCCATGAACAACCTTGGGTATTTGCTCAAGGCGGAGGGGCGGTGGGA
AGAGGCTCGGGTTTTTTATAAGGATGCATTGCGCATTCGCCGGGCCATTT
TCCTCCCTCATCACCCCCAAGTCATTGTTTCAATGAATAATTTGGCGGAG
TTGTGTTTGATTATCCCGGGCTCGGAGGCCGAGGGCAAGGCGCTGCAGGA
GGAGATTTTGGGGTTGCTGAGTGTAAATGAGAGTGGGCCTGGTGGTGGAG
GGAATGGATATGATGGAAAGGAAACTCGGCAAAAGTAA back to top
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