jgi.p|Nanoce1779_2|589359, mRNA_4505 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589359
Unique NamemRNA_4505
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1890
Alignment locationscaffold_10:766302..768480 -

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Properties
Property NameValue
TranscriptId589445
TrackFilteredModels2
ProteinId589359
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:766302..768480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589359gene_4505Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589359mRNA_4505-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4505CDS_4505Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4505 ID=mRNA_4505|Name=jgi.p|Nanoce1779_2|589359|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp
ACAACAGGTGGAAAATTAAATAACATCGCAATGCACAGGCTGTTGGCCCT
GGCATTAGCTTGTGTGTGCGGTCTGGGTTGGGTCCAGGCCTTCACACCCT
TGTCGCCATCGATTGTTTCGTCCTCCTCGCTCAAGAGTGGACCCTGGGGA
CAAGGAAGACGGAAGCCCTCCTCGTCGTCATTACCTAGTGTTCGACGAGA
GCGGCCCGTCGGGTGGGGAGGCATCGTTGTAGGGGGTACGTATATGCTCA
ATGCAAAAATAATGTTGGGGGAATGAATGTGTTATTTGAATCAAACACGC
ACTTGCTGGTGCTTATATTCATCTTACGTTCCAGGTGGAACGGGTAACGG
CGGTGGTGGCGGCGGCGGGGGTAATGGGGGAGCAGGCGGGGGATCATTTG
GCTGGTCAAAGGAAGGCAGCGGGGACGACGGCGAGGGCGACCACGGCGTA
GAATTGCCCAGGGATGTGACAGAATTGCTTGCCAGGGCGGGAAGGCAATT
CACGGACTTGCCCGCATCGACACAAAAGGCGTTGGTGGGTGGATCCATGA
CCTCGGGCTTGCTTCAGCGGTATCTGGAGCTGGAGAAGAAGGGTGGAGTC
GTTTCCAGCCTATTGGGCATGGGCATCTTTCGGGACCGGTTGCTGATGGA
TGGGTACCTCATGGATAAAATGGTGATCGAGATGGCTGTTGGAACCGCGG
CCCAGCTCCTGGCAGAATGGGACCGGCGGCGGGAGAAGCTCATGGCCGAG
CTCGACTATGCCTTCGCAGACACACTTACCTGCCTAGTCGCCAACTTCGC
CGCCGTTCTCATCTCTGCCCCGTCTGTTGCCGGTGCCGTCCCCCCTTCTG
GGAGGAACATCCCGGCGAACATGTTCCAAATAGTACCCCCCGGGGCTCGG
CCTTATGCCTTGACCGACCGAATCCTCAGCCCTTTCCTCAAGGTTCCCAC
CCTCTTTGCCGTGGGGATGGCGGCGTCTCTCCTCGGGTTTGGCACCACCA
GTCTGCTTACCTTAATTCGGAACCATCTACAAAGTGCCAAGAAGGACCCT
CTGCCCTCCTCCTTGCCAGCAGCAGTAGGGGCAGGAGAATGGGACACCGG
CAGGTGGTTCGGGAAGCAGACCGTGGCGGTAGTTGAGGAAGAGGTAGCAC
CGGCAGAGATGCCGTTGTTGAAGACGAGTGTTGCGGTGGGAGTGTTCCTT
GCTGTGTCGACCAACATCCGGTACCAGGTCATCTCGGGGTTGGTTGAGGA
GAGGGGTATTGCCCAGCTACTGGGGCACAACAAGCTCGCAGACCATCTGG
CATCGTTTGTGGCGAGGTCTTTTAACAGTTATATTGGCTCGGCGAACATG
ATTGACTATTTAAAGTTTCTAGGGTTGCAGCAATGAAGAGGGAGGAGGGT
GGAAGCAGGAGGCGGGCCACGGGGCTGCAGGAGCAGCAGTAGTTGTCAGC
TAGTAGAGAACGAGAAAGCATGTTGCGTCTCTCACAATTTTGGCGGATGA
GGATGACGAGCGAAAGGTATATGACGACGACGGGGACGCAGGGACTGGAG
GGGACGCAGGGACTGAGCGAGAGGGAGTCCGACGAAGAGAGCAGGGGGAT
GTACATAAATACAGCATTTCACCAGCCATGACAGAGGAAAAAGAGAGTGG
GAAAGACAAAGAGACAAGAAGAGAGACGAAGAGAAACTGCAGAGTGAGCG
AGAGAAAATAGGATTCATTCGCGCACACAAATTGCGTCGTTGCTAGTACT
AGAGGGGGGGCGCAGAAGAAAGAGGACAAGGACGGACATGGAGAGAGAGG
CATAGAGAAGGCAGTAAGGAGCCCACTTGTGTTTTTTTCTCCTCAATTTT
TTATTGAAAGAAGAAACTTAAATCTATGACTTAAAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|589359

>mRNA_4505-protein ID=mRNA_4505-protein|Name=jgi.p|Nanoce1779_2|589359|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MCYLNQTRTCWCLYSSYVPGGTGNGGGGGGGGNGGAGGGSFGWSKEGSGD
DGEGDHGVELPRDVTELLARAGRQFTDLPASTQKALVGGSMTSGLLQRYL
ELEKKGGVVSSLLGMGIFRDRLLMDGYLMDKMVIEMAVGTAAQLLAEWDR
RREKLMAELDYAFADTLTCLVANFAAVLISAPSVAGAVPPSGRNIPANMF
QIVPPGARPYALTDRILSPFLKVPTLFAVGMAASLLGFGTTSLLTLIRNH
LQSAKKDPLPSSLPAAVGAGEWDTGRWFGKQTVAVVEEEVAPAEMPLLKT
SVAVGVFLAVSTNIRYQVISGLVEERGIAQLLGHNKLADHLASFVARSFN
SYIGSANMIDYLKFLGLQQ*
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mRNA from alignment at scaffold_10:766302..768480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4505 ID=mRNA_4505|Name=jgi.p|Nanoce1779_2|589359|organism=Nannochloropsis oceanica|type=mRNA|length=2179bp|location=Sequence derived from alignment at scaffold_10:766302..768480- (Nannochloropsis oceanica)
ACAACAGGTGGAAAATTAAATAACATCGCAATGCACAGGCTGTTGGCCCT
GGCATTAGCTTGTGTGTGCGGTCTGGGTTGGGTCCAGGCCTTCACACCCT
TGTCGCCATCGATTGTTTCGTCCTCCTCGCTCAAGGTACGCATGTGTAGC
CCATCCCCAAGGCCAGATACTAGCATCCCAAGGCTCTCAGATTTCTCACT
CATTTCTTCTCTGGTGCCTGACAGAGTGGACCCTGGGGACAAGGAAGACG
GAAGCCCTCCTCGTCGTCATTACCTAGTGTTCGACGAGAGCGGCCCGTCG
GGTGGGGAGGCATCGTTGTAGGGGGTACGTATATGCTCAATGCAAAAATA
ATGTTGGGGGAATGAATGTGTTATTTGAATCAAACACGCACTTGCTGGTG
CTTATATTCATCTTACGTTCCAGGTGGAACGGGTAACGGCGGTGGTGGCG
GCGGCGGGGGTAATGGGGGAGCAGGCGGGGGATCATTTGGCTGGTCAAAG
GAAGGCAGCGGGGACGACGGCGAGGGCGACCACGGCGTAGAATTGCCCAG
GGATGTGACAGAATTGCTTGCCAGGGCGGGAAGGCAATTCACGGACTTGC
CCGCATCGACACAAAAGGCGTTGGTGGGTGGATCCATGACCTCGGGCTTG
CTTCAGCGGTATCTGGAGCTGGAGAAGAAGGGTGGAGTCGTTTCCAGCCT
ATTGGGCATGGGCATCTTTCGGGACCGGTTGCTGATGGATGGGTACCTCA
TGGATAAAATGGTGATCGAGATGGCTGTTGGAAGTACGTGCATTGGAGGG
GAGGAGGGAGGGTTAGGTGGGGGTTTCGACGAGGGTTCTTTTAATGGAAA
CGTTTGCCATTCCCCGCGCTTGGGTAAGTAAGTATATCTTACCATCGCCT
TTGTGCTTTCTTTTGGTCGACCTAATGCCCTCCCCTGTGCATTCAATCTC
CCCCCCCCCCCCCCTCCTCTTCCTACCCCCTAGCCGCGGCCCAGCTCCTG
GCAGAATGGGACCGGCGGCGGGAGAAGCTCATGGCCGAGCTCGACTATGC
CTTCGCAGACACACTTACCTGCCTAGTCGCCAACTTCGCCGCCGTTCTCA
TCTCTGCCCCGTCTGTTGCCGGTGCCGTCCCCCCTTCTGGGAGGAACATC
CCGGCGAACATGTTCCAAATAGTACCCCCCGGGGCTCGGCCTTATGCCTT
GACCGACCGAATCCTCAGCCCTTTCCTCAAGGTTCCCACCCTCTTTGCCG
TGGGGATGGCGGCGTCTCTCCTCGGGTTTGGCACCACCAGTCTGCTTACC
TTAATTCGGAACCATCTACAAAGTGCCAAGAAGGACCCTCTGCCCTCCTC
CTTGCCAGCAGCAGTAGGGGCAGGAGAATGGGACACCGGCAGGTGGTTCG
GGAAGCAGACCGTGGCGGTAGTTGAGGAAGAGGTAGCACCGGCAGAGATG
CCGTTGTTGAAGACGAGTGTTGCGGTGGGAGTGTTCCTTGCTGTGTCGAC
CAACATCCGGTACCAGGTCATCTCGGGGTTGGTTGAGGAGAGGGGTATTG
CCCAGCTACTGGGGCACAACAAGCTCGCAGACCATCTGGCATCGTTTGTG
GCGAGGTCTTTTAACAGTTATATTGGCTCGGCGAACATGATTGACTATTT
AAAGTTTCTAGGGTTGCAGCAATGAAGAGGGAGGAGGGTGGAAGCAGGAG
GCGGGCCACGGGGCTGCAGGAGCAGCAGTAGTTGTCAGCTAGTAGAGAAC
GAGAAAGCATGTTGCGTCTCTCACAATTTTGGCGGATGAGGATGACGAGC
GAAAGGTATATGACGACGACGGGGACGCAGGGACTGGAGGGGACGCAGGG
ACTGAGCGAGAGGGAGTCCGACGAAGAGAGCAGGGGGATGTACATAAATA
CAGCATTTCACCAGCCATGACAGAGGAAAAAGAGAGTGGGAAAGACAAAG
AGACAAGAAGAGAGACGAAGAGAAACTGCAGAGTGAGCGAGAGAAAATAG
GATTCATTCGCGCACACAAATTGCGTCGTTGCTAGTACTAGAGGGGGGGC
GCAGAAGAAAGAGGACAAGGACGGACATGGAGAGAGAGGCATAGAGAAGG
CAGTAAGGAGCCCACTTGTGTTTTTTTCTCCTCAATTTTTTATTGAAAGA
AGAAACTTAAATCTATGACTTAAAAAAAA
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Coding sequence (CDS) from alignment at scaffold_10:766302..768480-

>mRNA_4505 ID=mRNA_4505|Name=jgi.p|Nanoce1779_2|589359|organism=Nannochloropsis oceanica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_10:766302..768480- (Nannochloropsis oceanica)
CCGCGGCCCAGCTCCTGGCAGAATGGGACCGGCGGCGGGAGAAGCTCATG
GCCGAGCTCGACTATGCCTTCGCAGACACACTTACCTGCCTAGTCGCCAA
CTTCGCCGCCGTTCTCATCTCTGCCCCGTCTGTTGCCGGTGCCGTCCCCC
CTTCTGGGAGGAACATCCCGGCGAACATGTTCCAAATAGTACCCCCCGGG
GCTCGGCCTTATGCCTTGACCGACCGAATCCTCAGCCCTTTCCTCAAGGT
TCCCACCCTCTTTGCCGTGGGGATGGCGGCGTCTCTCCTCGGGTTTGGCA
CCACCAGTCTGCTTACCTTAATTCGGAACCATCTACAAAGTGCCAAGAAG
GACCCTCTGCCCTCCTCCTTGCCAGCAGCAGTAGGGGCAGGAGAATGGGA
CACCGGCAGGTGGTTCGGGAAGCAGACCGTGGCGGTAGTTGAGGAAGAGG
TAGCACCGGCAGAGATGCCGTTGTTGAAGACGAGTGTTGCGGTGGGAGTG
TTCCTTGCTGTGTCGACCAACATCCGGTACCAGGTCATCTCGGGGTTGGT
TGAGGAGAGGGGTATTGCCCAGCTACTGGGGCACAACAAGCTCGCAGACC
ATCTGGCATCGTTTGTGGCGAGGTCTTTTAACAGTTATATTGGCTCGGCG
AACATGATTGACTATTTAAAGTTTCTAGGGTTGCAGCAATGAATGTGTTA
TTTGAATCAAACACGCACTTGCTGGTGCTTATATTCATCTTACGTTCCAG
GTGGAACGGGTAACGGCGGTGGTGGCGGCGGCGGGGGTAATGGGGGAGCA
GGCGGGGGATCATTTGGCTGGTCAAAGGAAGGCAGCGGGGACGACGGCGA
GGGCGACCACGGCGTAGAATTGCCCAGGGATGTGACAGAATTGCTTGCCA
GGGCGGGAAGGCAATTCACGGACTTGCCCGCATCGACACAAAAGGCGTTG
GTGGGTGGATCCATGACCTCGGGCTTGCTTCAGCGGTATCTGGAGCTGGA
GAAGAAGGGTGGAGTCGTTTCCAGCCTATTGGGCATGGGCATCTTTCGGG
ACCGGTTGCTGATGGATGGGTACCTCATGGATAAAATGGTGATCGAGATG
GCTGTTGGAACCGCGGCCCAGCTCCTGGCAGAATGGGACCGGCGGCGGGA
GAAGCTCATGGCCGAGCTCGACTATGCCTTCGCAGACACACTTACCTGCC
TAGTCGCCAACTTCGCCGCCGTTCTCATCTCTGCCCCGTCTGTTGCCGGT
GCCGTCCCCCCTTCTGGGAGGAACATCCCGGCGAACATGTTCCAAATAGT
ACCCCCCGGGGCTCGGCCTTATGCCTTGACCGACCGAATCCTCAGCCCTT
TCCTCAAGGTTCCCACCCTCTTTGCCGTGGGGATGGCGGCGTCTCTCCTC
GGGTTTGGCACCACCAGTCTGCTTACCTTAATTCGGAACCATCTACAAAG
TGCCAAGAAGGACCCTCTGCCCTCCTCCTTGCCAGCAGCAGTAGGGGCAG
GAGAATGGGACACCGGCAGGTGGTTCGGGAAGCAGACCGTGGCGGTAGTT
GAGGAAGAGGTAGCACCGGCAGAGATGCCGTTGTTGAAGACGAGTGTTGC
GGTGGGAGTGTTCCTTGCTGTGTCGACCAACATCCGGTACCAGGTCATCT
CGGGGTTGGTTGAGGAGAGGGGTATTGCCCAGCTACTGGGGCACAACAAG
CTCGCAGACCATCTGGCATCGTTTGTGGCGAGGTCTTTTAACAGTTATAT
TGGCTCGGCGAACATGATTGACTATTTAAAGTTTCTAGGGTTGCAGCAAT
GAATGTGTTATTTGAATCAAACACGCACTTGCTGGTGCTTATATTCATCT
TACGTTCCAGGTGGAACGGGTAACGGCGGTGGTGGCGGCGGCGGGGGTAA
TGGGGGAGCAGGCGGGGGATCATTTGGCTGGTCAAAGGAAGGCAGCGGGG
ACGACGGCGAGGGCGACCACGGCGTAGAATTGCCCAGGGATGTGACAGAA
TTGCTTGCCAGGGCGGGAAGGCAATTCACGGACTTGCCCGCATCGACACA
AAAGGCGTTGGTGGGTGGATCCATGACCTCGGGCTTGCTTCAGCGGTATC
TGGAGCTGGAGAAGAAGGGTGGAGTCGTTTCCAGCCTATTGGGCATGGGC
ATCTTTCGGGACCGGTTGCTGATGGATGGGTACCTCATGGATAAAATGGT
GATCGAGATGGCTGTTGGAA
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Synonyms
Publications