jgi.p|Nanoce1779_2|565922, mRNA_4503 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|565922
Unique Name	mRNA_4503
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	987
Alignment location	scaffold_10:759694..762601 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	566008
Track	FilteredModels2
ProteinId	565922

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:759694..762601 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565922	gene_4503	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565922	mRNA_4503-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4503	CDS_4503	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:759694..762601+
coding sequence from alignment at scaffold_10:759694..762601+

mRNA sequence

>mRNA_4503 ID=mRNA_4503|Name=jgi.p|Nanoce1779_2|565922|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
ATGCCCTTTGAGCCCGTGCTTCGTCCGGCCATGCAGCGGATGCTCACGGA
GGACTTCGAGCCGCCTTTACCTTGCGAATTTGCGGAGCACAACGCTGGGC
GGTTGGTGGTGCGCTCGCACGACTTGGTGCAGTGGCTGAATGCGCAGGTA
AGACAAGTCAGTGGAGAGGAGGGAGGGAGAGACTGGGGAAATGGGGAAAC
GTGCCCCTCTTCTACTATTGTCAATCGGCTCATGCAGTTCCTGCATTTCG
CGCGTGGCGGTAGCGGTGGCGTGCTGCTCAAAGATGCACAAATGTCCGCG
CTTCGCCTCTCCACATCGTCGACAGCGTGGAATGTTGGCATCGGTATTGA
GGACAAGTACCGTGCTATCGAGGGCTTTTGGAATGTGACTGCCGGCCACT
TCCCCGTTTCCGAGGGAGGGCTCACCTCCACCGCTGGTGAAGACCTTGGC
CTCCTTCCCTACGCGTACGACTTCGCCGTGACACTAGCTGTGCCGGACGG
AGGGGATTTTGGGGAGAGCACCACACGTCTGTCGTCTCATTATGAGCAGG
TCCAACCTTACATCCAAGCCTCTCACACACTCGTTTACACCAGCGACCGC
GTGGCGATTGCTCGTCCGACAGGGAAGCAGCTGAGGCATGTGTGCATCTA
TCATTTTAAAGCGGAGGTGACGGGGGAGATGAAACTTAATGCCCTTCTAG
ACCTGGAGGGGACTGTTCTGAACATCCCGGGAGTGGCTCATTTTTCTTGT
GGACTAGATGAAGAGAGAGCTCGTTCGCCTCACGGAGCCTTTGGTCTGGT
GGCTGATTTTGAGGTTGCGGAGGACTTTAACTCTTTCTTCGCGGACCCGT
CCCGATTGAGGATGATGCAGGCGCTTAACCCCTTGCTGGCTTGTAGGACA
TGTGTCGATTATTGGGCTCCCCAGGATATCATTGCGGAGGAAGAGGGTGC
GCTGGCTGGGGCGATAGAGCTCCGTCGCCTGCACTGA

protein sequence of jgi.p|Nanoce1779_2|565922

>mRNA_4503-protein ID=mRNA_4503-protein|Name=jgi.p|Nanoce1779_2|565922|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLNAQV
RQVSGEEGGRDWGNGETCPSSTIVNRLMQFLHFARGGSGGVLLKDAQMSA
LRLSTSSTAWNVGIGIEDKYRAIEGFWNVTAGHFPVSEGGLTSTAGEDLG
LLPYAYDFAVTLAVPDGGDFGESTTRLSSHYEQVQPYIQASHTLVYTSDR
VAIARPTGKQLRHVCIYHFKAEVTGEMKLNALLDLEGTVLNIPGVAHFSC
GLDEERARSPHGAFGLVADFEVAEDFNSFFADPSRLRMMQALNPLLACRT
CVDYWAPQDIIAEEEGALAGAIELRRLH*

mRNA from alignment at scaffold_10:759694..762601+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4503 ID=mRNA_4503|Name=jgi.p|Nanoce1779_2|565922|organism=Nannochloropsis oceanica|type=mRNA|length=2908bp|location=Sequence derived from alignment at scaffold_10:759694..762601+ (Nannochloropsis oceanica)
ATGCCCTTTGAGCCCGTGCTTCGTCCGGCCATGCAGCGGATGCTCACGGA
GGACTTCGAGCCGCCTTTACCTTGCGAATTTGCGGAGCACAACGCTGGGC
GGTTGGTGGTGCGCTCGCACGACTTGGTGCAGTGGCTGAATGCGCAGGTA
AGACAAGTCAGTGGAGAGGAGGGAGGGAGAGACTGGGGAAATGGGGAAAC
GTGCCCCTCTTCTACTATTGTCAATCGGTGAGTTGCTCACATTCTTAAAT
TCTCTCTTTATACATGCTCGTTGATATTCACATACACACAACTATCTGCT
CATCCAAGTCCTGCAAAAAAGCCTTGTCGCCCGCCGAGAAACAGTCAGGC
ACCTTAAAACTCCGTAGCCCCGAGCAGCTGGGCAGCAGCTTTCAGGTTTT
CAAGGAATGTCGAGAGGAAATAGAATCCTTTGTTGCCGAAGCATGCGCTG
TGGCCGATGAGGCCTTTCGGAAGGATGGGGAACTGGCAGCAGAGCCAATA
AAAGGGGAGTAATGTTAAATAAGTATGTGTAAATTACTTTACTACCATTA
GTTTGGTAGCTTTACCACTGTTGTAAGTAAAGAAATGAACTGAAAGCGTC
AGCGTTTCCAAGATTCATGTTTATCTTTTCGCTCGAATTTATGAATTCGT
CTATCGTGCCGAATTCTGTATGTCAACAAAATAAGGGCCTATGTCAAGGG
CCGCACGACTTATGTAACAATTTATACATTTCTCCTTCCTGGGCCGTACG
CTCTTCTCGACTCTCTCAATTCTCACGCCATGGGCATGACCAAGGCACGA
ACCGTCATGTGGGCGTCCATTTCCACCTGCACACTGCTTTCTACTGTCTC
TTCAGGCTCATGCAGTTCCTGCATTTCGCGCGTGGCGGTAGCGGTGGCGT
GCTGCTCAAAGATGCACAAATGTCCGCGCTTCGCCTCTCCACATCGTCGA
CAGCGGTAAGTAGGGCGATGCGGGGGTCGAGGATTTGTCGGCATGGTCTC
GTCGTCAGTATCGGCAAAGGAAGGGCAGGTGACATGTGAAGTGTGTTGTG
GGAAAAAGGGTAGAGGAGGTTTGAATGGTTTGTAGCATACAGCAAAACAA
GACAAGGCGAGACACACGGCAAGCAGTGGCTGGCTGCCTCGGTATGGAAA
CGAAGAAAGGGGGAGGACACTGCTGTTGCACCGGGTAGTGATTCACGATT
CATACTGTGCGGACATGCGGAAGCGACGAATGGGCCCAAGAAAGGCGACA
AGTCCGGTTGTGGTCCTCACGCCTGGACTGAACGGAATATTGAGACAACA
TAGCCCTGCTGCAGCCAGCATCTGCGTGAGGGTGCAACAAGGGCGCGGTG
ATTGATGTGGTGGATTTACAGATTGTGTCAATCCCCTTCTTCCACCTCCT
CGTTGCTCAACACGTGTTTCTGGCCTCGTCTACCACGCAGGGCGCACAGA
AAAGGCCAACCACCTCCGTCTCTTCCACCGCCCTCTGGAAGACCTGCAGG
TGCCCCCAGCGATGGACGACTGGCGTATGAAGACAATCACCACTCGGGAA
AATTTGGTCTTCCAGACTAGCTGGCCCTCTTTATATGTCAAGTCCTCACT
TCCCCCTCCACCCACTCACACCCAGTCTCCGCTAGCAACTGGCAATTTCG
CCCTCACACATCCCCGTGGTCAAGCTGGCGGTCTCCTTCCTTTCCCGGTG
CCTGTGCCCCTCCTCGTTGGATCCTGGCTAGAGCAATGATGGCATCTTCT
CTTGCCATGTTGCTCCTAATGTGTACGACTTCGACGGTCGTCCACCGCGC
CCATGCGACTGTGGGCGAAAGAACTGCCCTGACCCGCCCTGAGGGTTTGG
GTGGCACTCAGGTTGTGTCCTTGTACAAGGTAAGCTCAAACGTTGGTTGA
GGTAGCAAGTAGGGGTGGGGGCGTCTGAGAGTTCTTGCGCGGGAGGCAGG
AAAGGATGAGGGAAGCACGCTTTTACTAGGTCAGGAATGTAGCGTGTGAC
AAAAAAAGGCCAGCTACCCTTCTCCATCCCCAGTATCGTCTGAAGACAGA
AAGAACTCATAAACGAGATGCTCACGACTTGAATGACCATACATGCACTC
CTACCTGCCCCTCCCCGCCCGGACTTATCTTTTCATAGTGCCGGCATCAA
AAATGTGCCGTTCTCTCATGCAGTAACTGCGCTTCGCACTCCCTTTCCCT
GCTTCCCTCACCCCCCTTTCCCCCGTCCCCGCTTCCATCTCACAACAGTG
GAATGTTGGCATCGGTATTGAGGACAAGTACCGTGCTATCGAGGGCTTTT
GGAATGTGACTGCCGGCCACTTCCCCGTTTCCGAGGGAGGGCTCACCTCC
ACCGCTGGTGAAGACCTTGGCCTCCTTCCCTACGCGTACGACTTCGCCGT
GACACTAGCTGTGCCGGACGGAGGGGATTTTGGGGAGAGCACCACACGTC
TGTCGTCTCATTATGAGCAGGTCCAACCTTACATCCAAGCCTCTCACACA
CTCGTTTACACCAGCGACCGCGTGGCGATTGCTCGTCCGACAGGGAAGCA
GCTGAGGCATGTGTGCATCTATCATTTTAAAGCGGAGGTGACGGGGGAGA
TGAAACTTAATGCCCTTCTAGACCTGGAGGGGACTGTTCTGAACATCCCG
GGAGTGGCTCATTTTTCTTGTGGACTAGATGAAGAGAGAGCTCGTTCGCC
TCACGGAGCCTTTGGTCTGGTGGCTGATTTTGAGGTTGCGGAGGACTTTA
ACTCTTTCTTCGCGGACCCGTCCCGATTGAGGATGATGCAGGCGCTTAAC
CCCTTGCTGGCTTGTAGGACATGTGTCGATTATTGGGCTCCCCAGGATAT
CATTGCGGAGGAAGAGGGTGCGCTGGCTGGGGCGATAGAGCTCCGTCGCC
TGCACTGA

Coding sequence (CDS) from alignment at scaffold_10:759694..762601+

>mRNA_4503 ID=mRNA_4503|Name=jgi.p|Nanoce1779_2|565922|organism=Nannochloropsis oceanica|type=CDS|length=2961bp|location=Sequence derived from alignment at scaffold_10:759694..762601+ (Nannochloropsis oceanica)
ATGCCCTTTGAGCCCGTGCTTCGTCCGGCCATGCAGCGGATGCTCACGGA
GGACTTCGAGCCGCCTTTACCTTGCGAATTTGCGGAGCACAACGCTGGGC
GGTTGGTGGTGCGCTCGCACGACTTGGTGCAGTGGCTGAATGCGCAGGTA
AGACAAGTCAGTGGAGAGGAGGGAGGGAGAGACTGGGGAAATGGGGAAAC
GTGCCCCTCTTCTACTATTGTCAATCGGCTCATGCAGTTCCTGCATTTCG
CGCGTGGCGGTAGCGGTGGCGTGCTGCTCAAAGATGCACAAATGTCCGCG
CTTCGCCTCTCCACATCGTCGACAGCGTGGAATGTTGGCATCGGTATTGA
GGACAAGTACCGTGCTATCGAGGGCTTTTGGAATGTGACTGCCGGCCACT
TCCCCGTTTCCGAGGGAGGGCTCACCTCCACCGCTGGTGAAGACCTTGGC
CTCCTTCCCTACGCGTACGACTTCGCCGTGACACTAGCTGTGCCGGACGG
AGGGGATTTTGGGGAGAGCACCACACGTCTGTCGTCTCATTATGAGCAGG
TCCAACCTTACATCCAAGCCTCTCACACACTCGTTTACACCAGCGACCGC
GTGGCGATTGCTCGTCCGACAGGGAAGCAGCTGAGGCATGTGTGCATCTA
TCATTTTAAAGCGGAGGTGACGGGGGAGATGAAACTTAATGCCCTTCTAG
ACCTGGAGGGGACTGTTCTGAACATCCCGGGAGTGGCTCATTTTTCTTGT
GGACTAGATGAAGAGAGAGCTCGTTCGCCTCACGGAGCCTTTGGTCTGGT
GGCTGATTTTGAGGTTGCGGAGGACTTTAACTCTTTCTTCGCGGACCCGT
CCCGATTGAGGATGATGCAGGCGCTTAACCCCTTGCTGGCTTGTAGGACA
TGTGTCGATTATTGGGCTCCCCAGGATATCATTGCGGAGGAAGAGGGTGC
GCTGGCTGGGGCGATAGAGCTCCGTCGCCTGCACTGAATGCCCTTTGAGC
CCGTGCTTCGTCCGGCCATGCAGCGGATGCTCACGGAGGACTTCGAGCCG
CCTTTACCTTGCGAATTTGCGGAGCACAACGCTGGGCGGTTGGTGGTGCG
CTCGCACGACTTGGTGCAGTGGCTGAATGCGCAGGTAAGACAAGTCAGTG
GAGAGGAGGGAGGGAGAGACTGGGGAAATGGGGAAACGTGCCCCTCTTCT
ACTATTGTCAATCGGCTCATGCAGTTCCTGCATTTCGCGCGTGGCGGTAG
CGGTGGCGTGCTGCTCAAAGATGCACAAATGTCCGCGCTTCGCCTCTCCA
CATCGTCGACAGCGTGGAATGTTGGCATCGGTATTGAGGACAAGTACCGT
GCTATCGAGGGCTTTTGGAATGTGACTGCCGGCCACTTCCCCGTTTCCGA
GGGAGGGCTCACCTCCACCGCTGGTGAAGACCTTGGCCTCCTTCCCTACG
CGTACGACTTCGCCGTGACACTAGCTGTGCCGGACGGAGGGGATTTTGGG
GAGAGCACCACACGTCTGTCGTCTCATTATGAGCAGGTCCAACCTTACAT
CCAAGCCTCTCACACACTCGTTTACACCAGCGACCGCGTGGCGATTGCTC
GTCCGACAGGGAAGCAGCTGAGGCATGTGTGCATCTATCATTTTAAAGCG
GAGGTGACGGGGGAGATGAAACTTAATGCCCTTCTAGACCTGGAGGGGAC
TGTTCTGAACATCCCGGGAGTGGCTCATTTTTCTTGTGGACTAGATGAAG
AGAGAGCTCGTTCGCCTCACGGAGCCTTTGGTCTGGTGGCTGATTTTGAG
GTTGCGGAGGACTTTAACTCTTTCTTCGCGGACCCGTCCCGATTGAGGAT
GATGCAGGCGCTTAACCCCTTGCTGGCTTGTAGGACATGTGTCGATTATT
GGGCTCCCCAGGATATCATTGCGGAGGAAGAGGGTGCGCTGGCTGGGGCG
ATAGAGCTCCGTCGCCTGCACTGAATGCCCTTTGAGCCCGTGCTTCGTCC
GGCCATGCAGCGGATGCTCACGGAGGACTTCGAGCCGCCTTTACCTTGCG
AATTTGCGGAGCACAACGCTGGGCGGTTGGTGGTGCGCTCGCACGACTTG
GTGCAGTGGCTGAATGCGCAGGTAAGACAAGTCAGTGGAGAGGAGGGAGG
GAGAGACTGGGGAAATGGGGAAACGTGCCCCTCTTCTACTATTGTCAATC
GGCTCATGCAGTTCCTGCATTTCGCGCGTGGCGGTAGCGGTGGCGTGCTG
CTCAAAGATGCACAAATGTCCGCGCTTCGCCTCTCCACATCGTCGACAGC
GTGGAATGTTGGCATCGGTATTGAGGACAAGTACCGTGCTATCGAGGGCT
TTTGGAATGTGACTGCCGGCCACTTCCCCGTTTCCGAGGGAGGGCTCACC
TCCACCGCTGGTGAAGACCTTGGCCTCCTTCCCTACGCGTACGACTTCGC
CGTGACACTAGCTGTGCCGGACGGAGGGGATTTTGGGGAGAGCACCACAC
GTCTGTCGTCTCATTATGAGCAGGTCCAACCTTACATCCAAGCCTCTCAC
ACACTCGTTTACACCAGCGACCGCGTGGCGATTGCTCGTCCGACAGGGAA
GCAGCTGAGGCATGTGTGCATCTATCATTTTAAAGCGGAGGTGACGGGGG
AGATGAAACTTAATGCCCTTCTAGACCTGGAGGGGACTGTTCTGAACATC
CCGGGAGTGGCTCATTTTTCTTGTGGACTAGATGAAGAGAGAGCTCGTTC
GCCTCACGGAGCCTTTGGTCTGGTGGCTGATTTTGAGGTTGCGGAGGACT
TTAACTCTTTCTTCGCGGACCCGTCCCGATTGAGGATGATGCAGGCGCTT
AACCCCTTGCTGGCTTGTAGGACATGTGTCGATTATTGGGCTCCCCAGGA
TATCATTGCGGAGGAAGAGGGTGCGCTGGCTGGGGCGATAGAGCTCCGTC
GCCTGCACTGA

Synonyms

Publications