jgi.p|Nanoce1779_2|589336, mRNA_4501 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589336
Unique Name	mRNA_4501
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1170
Alignment location	scaffold_10:753968..755576 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589422
Track	FilteredModels2
ProteinId	589336

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:753968..755576 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589336	gene_4501	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589336	mRNA_4501-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4501	CDS_4501	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:753968..755576+
coding sequence from alignment at scaffold_10:753968..755576+

mRNA sequence

>mRNA_4501 ID=mRNA_4501|Name=jgi.p|Nanoce1779_2|589336|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp
ACAGCGACCTTGTCTAAGCAGTCAGCAGAATGATTCGAGGTGGTGTCGTG
GCAGCAGCGGGGCTGTTGCTTTTGAGCCCGTGCTTTGCCTTCATGCCTAC
GCCTCTTGCCCATAGAGGGGCCAGCAGAATGGTTATGCAGGCCGACAAGG
GCGAGCGAGGCAAGAGTAAGATCCCAGCTGTCGGCATGTCTGTGGTGGGG
CGTTCGCTTGCCGCAACCGGTGTGCTATTGTCAACCTTCCTGGGGGGCGG
AGGACTGCCTGGTGCGTGGGCAGCGCCATCGACGACGGCTAATGACAAGC
AGACGACATCAAGACTGATCAAGAAAACAGGAGTCAAGGAGGAGCCGAAA
TCGCTGAAAGAGGAGAACAAGGATCTGTCCGACGTGATTGCCCGGGGCAT
GATTCGGCTGCCGGAGATTGAGGGTTATCCCTTTGGGCCTGAGCGACCGG
CACAACTGAACTACGCGCTGGAGAACAATGATGCCGCCCTCCTCATCACG
TGCTATGGGCGGGAAGGTGGACCAGTAGCCGCGAAAAAGATCAAGCTGCA
AGGCTTAGAATTTCCCTACACCTTCGAGCTCACCTTCAACAATTTGCTCT
TCCCCCTGACTAAGGAAACCTGGGAGAAAGATAACCGCGCATTTGACGAC
CTTGGTATCTCCGCCTTGCTAGACCTGGACGGAAAGTTCTCCACTGCCAA
TGAAAATGATCTTTTGGGCTTCGGGATTTCCAAGCCTGTGGCTATTGCAG
GCAGCCAGATCCGCCGGGACGCCCTTATCCAAGTGACGGCCCGCACGGGC
GTGAAGCAATACACAGACGAAGAGCAACGCCTCCTGTCCACGATTGATTT
GGAGTTGGCCCGGCAGGCTCAAGGGGGGAGTTTGGCGCAGCTGGCACAGG
AGAATGGTGGCGGCAACATTGAGGTGCTCACAAACCAACGCCAGACCGAG
CCTGCAGATCCAGCTTCAAGTGTAAAACGCGAATGATAGAAAGCAGGGCA
GGGGAGAGGAAGGGAAAGGAGGAGAGCTTTTCTTATTTTTTGTCCACTCG
GTGACCGACAAAAAATGCGTGAAGGGAAAAAAAGAAAGAGCTGACTGCTT
TCCGACTAGTTTACTAGGTCCCAACAACAGCACCGCGCGCGCCTAAAAGA
AAAAAGAGTATCCCGCCTTA

protein sequence of jgi.p|Nanoce1779_2|589336

>mRNA_4501-protein ID=mRNA_4501-protein|Name=jgi.p|Nanoce1779_2|589336|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MIRGGVVAAAGLLLLSPCFAFMPTPLAHRGASRMVMQADKGERGKSKIPA
VGMSVVGRSLAATGVLLSTFLGGGGLPGAWAAPSTTANDKQTTSRLIKKT
GVKEEPKSLKEENKDLSDVIARGMIRLPEIEGYPFGPERPAQLNYALENN
DAALLITCYGREGGPVAAKKIKLQGLEFPYTFELTFNNLLFPLTKETWEK
DNRAFDDLGISALLDLDGKFSTANENDLLGFGISKPVAIAGSQIRRDALI
QVTARTGVKQYTDEEQRLLSTIDLELARQAQGGSLAQLAQENGGGNIEVL
TNQRQTEPADPASSVKRE*

mRNA from alignment at scaffold_10:753968..755576+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4501 ID=mRNA_4501|Name=jgi.p|Nanoce1779_2|589336|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp|location=Sequence derived from alignment at scaffold_10:753968..755576+ (Nannochloropsis oceanica)
ACAGCGACCTTGTCTAAGCAGTCAGCAGAATGATTCGAGGTGGTGTCGTG
GCAGCAGCGGGGCTGTTGCTTTTGAGCCCGTGCTTTGCCTTCATGCCTAC
GCCTCTTGCCCATAGAGGGGCCAGCAGAATGGTTATGCAGGCCGACAAGG
GCGAGCGAGGCAAGAGTAAGATCCCAGCTGTCGGCATGTCTGTGGTGGGG
CGTTCGCTTGCCGCAACCGGTGTGCTATTGTCAACCTTCCTGGGGGGCGG
AGGACTGCCTGGTGCGTGGGCAGCGCCATCGACGACGGCTAATGACAAGC
AGACGACATCAAGACTGGTGCGTACACATTGATGGAGGTCTAGACGTGGC
GTGGCGTCGCGTGATGGTTTTGTGGCTGTGTGATACACATGCTCGGGCCC
TCTACTGCCCCCCGCGTTGCTATCTTCTCTATCCACGATACTCCTCTCCC
TTCCCATCACTCCAACCTGTTCCCTCATCTCTTCCCGATTACACATCAAT
TCAGATCAAGAAAACAGGAGTCAAGGAGGAGCCGAAATCGCTGAAAGAGG
AGAACAAGGATCTGTCCGACGTGATTGCCCGGGGCATGATTCGGCTGCCG
GAGATTGAGGGTTATCCCTTTGGGCCTGAGCGACCGGCACAACTGAACTA
CGCGCTGGAGAACAATGATGCCGCCCTCCTCATCACGTGCTATGGGCGGG
AAGGTGGACCAGTAGCCGCGAAAAAGTGAGTTCGACTATCACGGCTGATG
GTATATCCGTTCGCATTCCTGGAAACTCACTCGCGTGCTTCTCCCCACCT
CCCTCTCTCTCTTGATGACAGGATCAAGCTGCAAGGCTTAGAATTTCCCT
ACACCTTCGAGCTCACCTTCAACAATTTGCTCTTCCCCCTGACTAAGGAA
ACCTGGGAGAAAGATAACCGCGCATTTGACGACCTTGGTATCTCCGCCTT
GCTAGACCTGGACGGAAAGTTCTCCACTGCCAATGAAAATGATCTTTTGG
GCTTCGGGATTTCCAAGCCTGTGGCTATTGCAGGCAGCCAGGTACGAGAA
TGGCGGGTCGAGAGTGTCCTCGTTTAGTACGGGAGTGGTAAACGTGTTGC
AATTCAGTTATTTTTTGGCCCTGAGCTCCTTGGTGTATCTCATACTCAAA
TGAACCCTTGCTTCCTGGCTTTTCCTTTCTTTCTTCTTCATTTCTAGATC
CGCCGGGACGCCCTTATCCAAGTGACGGCCCGCACGGGCGTGAAGCAATA
CACAGACGAAGAGCAACGCCTCCTGTCCACGATTGATTTGGAGTTGGCCC
GGCAGGCTCAAGGGGGGAGTTTGGCGCAGCTGGCACAGGAGAATGGTGGC
GGCAACATTGAGGTGCTCACAAACCAACGCCAGACCGAGCCTGCAGATCC
AGCTTCAAGTGTAAAACGCGAATGATAGAAAGCAGGGCAGGGGAGAGGAA
GGGAAAGGAGGAGAGCTTTTCTTATTTTTTGTCCACTCGGTGACCGACAA
AAAATGCGTGAAGGGAAAAAAAGAAAGAGCTGACTGCTTTCCGACTAGTT
TACTAGGTCCCAACAACAGCACCGCGCGCGCCTAAAAGAAAAAAGAGTAT
CCCGCCTTA

Coding sequence (CDS) from alignment at scaffold_10:753968..755576+

>mRNA_4501 ID=mRNA_4501|Name=jgi.p|Nanoce1779_2|589336|organism=Nannochloropsis oceanica|type=CDS|length=3828bp|location=Sequence derived from alignment at scaffold_10:753968..755576+ (Nannochloropsis oceanica)
ATGATTCGAGGTGGTGTCGTGGCAGCAGCGGGGCTGTTGCTTTTGAGCCC
GTGCTTTGCCTTCATGCCTACGCCTCTTGCCCATAGAGGGGCCAGCAGAA
TGGTTATGCAGGCCGACAAGGGCGAGCGAGGCAAGAGTAAGATCCCAGCT
GTCGGCATGTCTGTGGTGGGGCGTTCGCTTGCCGCAACCGGTGTGCTATT
GTCAACCTTCCTGGGGGGCGGAGGACTGCCTGGTGCGTGGGCAGCGCCAT
CGACGACGGCTAATGACAAGCAGACGACATCAAGACTGATCAAGAAAACA
GGAGTCAAGGAGGAGCCGAAATCGCTGAAAGAGGAGAACAAGGATCTGTC
CGACGTGATTGCCCGGGGCATGATTCGGCTGCCGGAGATTGAGGGTTATC
CCTTTGGGCCTGAGCGACCGGCACAACTGAACTACGCGCTGGAGAACAAT
GATGCCGCCCTCCTCATCACGTGCTATGGGCGGGAAGGTGGACCAGTAGC
CGCGAAAAAGATCAAGCTGCAAGGCTTAGAATTTCCCTACACCTTCGAGC
TCACCTTCAACAATTTGCTCTTCCCCCTGACTAAGGAAACCTGGGAGAAA
GATAACCGCGCATTTGACGACCTTGGTATCTCCGCCTTGCTAGACCTGGA
CGGAAAGTTCTCCACTGCCAATGAAAATGATCTTTTGGGCTTCGGGATTT
CCAAGCCTGTGGCTATTGCAGGCAGCCAGATCCGCCGGGACGCCCTTATC
CAAGTGACGGCCCGCACGGGCGTGAAGCAATACACAGACGAAGAGCAACG
CCTCCTGTCCACGATTGATTTGGAGTTGGCCCGGCAGGCTCAAGGGGGGA
GTTTGGCGCAGCTGGCACAGGAGAATGGTGGCGGCAACATTGAGGTGCTC
ACAAACCAACGCCAGACCGAGCCTGCAGATCCAGCTTCAAGTGTAAAACG
CGAATGAATGATTCGAGGTGGTGTCGTGGCAGCAGCGGGGCTGTTGCTTT
TGAGCCCGTGCTTTGCCTTCATGCCTACGCCTCTTGCCCATAGAGGGGCC
AGCAGAATGGTTATGCAGGCCGACAAGGGCGAGCGAGGCAAGAGTAAGAT
CCCAGCTGTCGGCATGTCTGTGGTGGGGCGTTCGCTTGCCGCAACCGGTG
TGCTATTGTCAACCTTCCTGGGGGGCGGAGGACTGCCTGGTGCGTGGGCA
GCGCCATCGACGACGGCTAATGACAAGCAGACGACATCAAGACTGATCAA
GAAAACAGGAGTCAAGGAGGAGCCGAAATCGCTGAAAGAGGAGAACAAGG
ATCTGTCCGACGTGATTGCCCGGGGCATGATTCGGCTGCCGGAGATTGAG
GGTTATCCCTTTGGGCCTGAGCGACCGGCACAACTGAACTACGCGCTGGA
GAACAATGATGCCGCCCTCCTCATCACGTGCTATGGGCGGGAAGGTGGAC
CAGTAGCCGCGAAAAAGATCAAGCTGCAAGGCTTAGAATTTCCCTACACC
TTCGAGCTCACCTTCAACAATTTGCTCTTCCCCCTGACTAAGGAAACCTG
GGAGAAAGATAACCGCGCATTTGACGACCTTGGTATCTCCGCCTTGCTAG
ACCTGGACGGAAAGTTCTCCACTGCCAATGAAAATGATCTTTTGGGCTTC
GGGATTTCCAAGCCTGTGGCTATTGCAGGCAGCCAGATCCGCCGGGACGC
CCTTATCCAAGTGACGGCCCGCACGGGCGTGAAGCAATACACAGACGAAG
AGCAACGCCTCCTGTCCACGATTGATTTGGAGTTGGCCCGGCAGGCTCAA
GGGGGGAGTTTGGCGCAGCTGGCACAGGAGAATGGTGGCGGCAACATTGA
GGTGCTCACAAACCAACGCCAGACCGAGCCTGCAGATCCAGCTTCAAGTG
TAAAACGCGAATGAATGATTCGAGGTGGTGTCGTGGCAGCAGCGGGGCTG
TTGCTTTTGAGCCCGTGCTTTGCCTTCATGCCTACGCCTCTTGCCCATAG
AGGGGCCAGCAGAATGGTTATGCAGGCCGACAAGGGCGAGCGAGGCAAGA
GTAAGATCCCAGCTGTCGGCATGTCTGTGGTGGGGCGTTCGCTTGCCGCA
ACCGGTGTGCTATTGTCAACCTTCCTGGGGGGCGGAGGACTGCCTGGTGC
GTGGGCAGCGCCATCGACGACGGCTAATGACAAGCAGACGACATCAAGAC
TGATCAAGAAAACAGGAGTCAAGGAGGAGCCGAAATCGCTGAAAGAGGAG
AACAAGGATCTGTCCGACGTGATTGCCCGGGGCATGATTCGGCTGCCGGA
GATTGAGGGTTATCCCTTTGGGCCTGAGCGACCGGCACAACTGAACTACG
CGCTGGAGAACAATGATGCCGCCCTCCTCATCACGTGCTATGGGCGGGAA
GGTGGACCAGTAGCCGCGAAAAAGATCAAGCTGCAAGGCTTAGAATTTCC
CTACACCTTCGAGCTCACCTTCAACAATTTGCTCTTCCCCCTGACTAAGG
AAACCTGGGAGAAAGATAACCGCGCATTTGACGACCTTGGTATCTCCGCC
TTGCTAGACCTGGACGGAAAGTTCTCCACTGCCAATGAAAATGATCTTTT
GGGCTTCGGGATTTCCAAGCCTGTGGCTATTGCAGGCAGCCAGATCCGCC
GGGACGCCCTTATCCAAGTGACGGCCCGCACGGGCGTGAAGCAATACACA
GACGAAGAGCAACGCCTCCTGTCCACGATTGATTTGGAGTTGGCCCGGCA
GGCTCAAGGGGGGAGTTTGGCGCAGCTGGCACAGGAGAATGGTGGCGGCA
ACATTGAGGTGCTCACAAACCAACGCCAGACCGAGCCTGCAGATCCAGCT
TCAAGTGTAAAACGCGAATGAATGATTCGAGGTGGTGTCGTGGCAGCAGC
GGGGCTGTTGCTTTTGAGCCCGTGCTTTGCCTTCATGCCTACGCCTCTTG
CCCATAGAGGGGCCAGCAGAATGGTTATGCAGGCCGACAAGGGCGAGCGA
GGCAAGAGTAAGATCCCAGCTGTCGGCATGTCTGTGGTGGGGCGTTCGCT
TGCCGCAACCGGTGTGCTATTGTCAACCTTCCTGGGGGGCGGAGGACTGC
CTGGTGCGTGGGCAGCGCCATCGACGACGGCTAATGACAAGCAGACGACA
TCAAGACTGATCAAGAAAACAGGAGTCAAGGAGGAGCCGAAATCGCTGAA
AGAGGAGAACAAGGATCTGTCCGACGTGATTGCCCGGGGCATGATTCGGC
TGCCGGAGATTGAGGGTTATCCCTTTGGGCCTGAGCGACCGGCACAACTG
AACTACGCGCTGGAGAACAATGATGCCGCCCTCCTCATCACGTGCTATGG
GCGGGAAGGTGGACCAGTAGCCGCGAAAAAGATCAAGCTGCAAGGCTTAG
AATTTCCCTACACCTTCGAGCTCACCTTCAACAATTTGCTCTTCCCCCTG
ACTAAGGAAACCTGGGAGAAAGATAACCGCGCATTTGACGACCTTGGTAT
CTCCGCCTTGCTAGACCTGGACGGAAAGTTCTCCACTGCCAATGAAAATG
ATCTTTTGGGCTTCGGGATTTCCAAGCCTGTGGCTATTGCAGGCAGCCAG
ATCCGCCGGGACGCCCTTATCCAAGTGACGGCCCGCACGGGCGTGAAGCA
ATACACAGACGAAGAGCAACGCCTCCTGTCCACGATTGATTTGGAGTTGG
CCCGGCAGGCTCAAGGGGGGAGTTTGGCGCAGCTGGCACAGGAGAATGGT
GGCGGCAACATTGAGGTGCTCACAAACCAACGCCAGACCGAGCCTGCAGA
TCCAGCTTCAAGTGTAAAACGCGAATGA

Synonyms

Publications