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Properties
| Property Name | Value |
|---|
| TranscriptId | 589419 |
| Track | FilteredModels2 |
| ProteinId | 589333 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:752347..757909 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4500 ID=mRNA_4500|Name=jgi.p|Nanoce1779_2|589333|organism=Nannochloropsis oceanica|type=mRNA|length=1345bp
TAACAACAAAAACAATCGTTTACAGCAAATGGGGCCATACTGCTGTCCGT
GTTGCTGGCCCGTCGCGGCCGTAGCTACTCTGGTCCCATCCATATCACTA
CCCGCAGCAGCGGCGACCACGAATCCAGCTCCACCATCGGCCGCCCCCGC
CGCAGTTGCAGTCGCAGACCCTCACACGCCGCCCATCCCCGCATGTATGA
TTGTGGATGGTCGAGCCCCCGCTTTCGAGCAGGGCATACTCCGGCTGGGC
CTGCAGATTGGTACGGAGACCATAACCCCCGGACAACGGGAGCTACTTCT
TTCGCTCTTACCCGAGGGCGATGTACACAAGCTGCAGGGTTTCTACCACG
ACAAGGACAGGCGGCTGGCGTTGGGAAGCCTGCTACTGCAGCGCGCTGCT
ACCAGTTGGGTTTTGGGTCAGCGCTTCAAGGACATCCTAATCCAACGCAC
ACAACCATATAACAAGCCCTATGTGGAAGCGGCGGGGACACGGCTTCCTG
GGTGGAACTACAATGTGTCGCATCACGGGGATTGGGTAGTGCTGGCCAGC
GAGCCTTCGGGTACAGTAGGGACAGATGTGGTGTGCTTGCAGGATCGGCC
TTTCCAGGCCATGACAGCATCGGAGTATATCGACCTTTTCCGCCGTCATT
TGACGCCGGCAGAGCGCGATGGATTGGAGGGATTGGCACCGAAAGGGGAG
ACTGCTCAGTATCGTGCGTTCTTCCGGGTGTGGGCGATGAAGGAGGCTTA
TATCAAGGCATTGGGAGTGGGATTGTCGTTTCCCATTCGACGATTGGAAT
GCAGTATCCTGGACGTTGGGAAGGATTATTTGAAGAGGGTAGAAGATGAA
GGGGAAGAGGAGGAGTTGATGATGGATGGGTATGGCATGGCCGATTGGAA
GCTTCGGTTTTTGGCTTTGCCGCCGGATGGATGTTATTTGTGGTGTACCG
CCGTGGGACCTGCGCCCTCTCCTCATTTCCAGGATGTAGGAGGTATCGGA
GGGACAGCAGCGGTAGGTATAAGCACGGTCGATGGTGATTGTAACCCATG
CAATGGCTACTTCTCTACCGTCCCCTTCTCGGCAGCGGCAAGTCAAGATG
CTGCGCTGTTAACGGCAACGGCAGCGGCAGCAGCCACCAAGGCGCCGGCA
TCGGGCCATACACAACAGAGGTTGCGGAGGCAGTATCACGTACTTAGCAT
TCGAGATATTTTACCTTGGTCGGTTCAAGCTGAGTGGGATGCCTCAGGAG
GAGGAAGTGGTAGCACGGAAGCAGCAGCAGCAGCAGCAGTATCCGTGTCA
ACTCAAGATTGAGAAGTGTAGCATACTGTATGTGAATGAGTCCTG back to topprotein sequence of jgi.p|Nanoce1779_2|589333 >mRNA_4500-protein ID=mRNA_4500-protein|Name=jgi.p|Nanoce1779_2|589333|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MGPYCCPCCWPVAAVATLVPSISLPAAAATTNPAPPSAAPAAVAVADPHT
PPIPACMIVDGRAPAFEQGILRLGLQIGTETITPGQRELLLSLLPEGDVH
KLQGFYHDKDRRLALGSLLLQRAATSWVLGQRFKDILIQRTQPYNKPYVE
AAGTRLPGWNYNVSHHGDWVVLASEPSGTVGTDVVCLQDRPFQAMTASEY
IDLFRRHLTPAERDGLEGLAPKGETAQYRAFFRVWAMKEAYIKALGVGLS
FPIRRLECSILDVGKDYLKRVEDEGEEEELMMDGYGMADWKLRFLALPPD
GCYLWCTAVGPAPSPHFQDVGGIGGTAAVGISTVDGDCNPCNGYFSTVPF
SAAASQDAALLTATAAAAATKAPASGHTQQRLRRQYHVLSIRDILPWSVQ
AEWDASGGGSGSTEAAAAAAVSVSTQD* back to topmRNA from alignment at scaffold_10:752347..757909- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4500 ID=mRNA_4500|Name=jgi.p|Nanoce1779_2|589333|organism=Nannochloropsis oceanica|type=mRNA|length=5563bp|location=Sequence derived from alignment at scaffold_10:752347..757909- (Nannochloropsis oceanica)
TAACAACAAAAACAATCGTTTCCATAACAGCGGGTCCATGACCATCCCTC
GGTCGCGCATACTCACCATCAGAGCCAGCCCCGCCTGCCACCTCCCCAGC
ATCTCACATGACTTCAACGCCATGCCATACCGCAATGCATCTGGCTCCAC
TTTTGCCTGGAGCATCGCCTGAAACCACCCCAAGAGTCGCTCGTGTTCCC
CGGCCTTTTCACACGCAGCGACCAACGCATAAAACGTCATCGCCGTCGGA
GGGGTAGGACCACCGAGAGGTTTCACCAGCGCCGCCAAACGTTCCGCCAA
GTCACACAAACCCAACCTCGCTAGATTACACAGCGACGCATGATAGCACG
ACAAGCTCAGACTGGCAGGCACGGTAGTAGCATCCCCGCCCCTGCCCCTC
CCCCGCCGTTGATGCTGCAGCTGCCGCTGTTGCTCCTGCATCCGAGCTAG
CTCCTCCAGTAGGCCCTCGATGACAGTGATGTTCCCTTCGCGTGTGGCCA
GGGACCAGAGGGGCTGGGTGCGATGAATGTCTCGTTCTGACGGTGGAATG
GCTTGAAAGAGCTCCCAGGCTTCTTGGAGGCGCCCGGCGCGACAACACGC
TTGGAGCAGCATACTGCAAATCACGACATTGGGGCGCAGCTGGTCCGCGG
ATACCATGTGTCGGAGCAGGGCGAGGGCTTCGTCGAGGTTGCCTCCTTCG
GGGGCGGCAAGTCCTTCGATGACTGCGCCGTAGGTGTAGACGTCTGGGGT
GAGGTTCCAGGAAGTGGTGGTACGTTGAAGACAGGCCACTGCTTCCTGCA
CGCGGTCGGATTTGGAGAGGGTGGAGAGGGCCATATTCAAGGTGGCCAGG
TCCAGTTTGAAGGGGGTTTGCCCCGTCTCGCCCTCGCCTTGGCCTAATGG
TATCTCGCTTGATGCAATTGGTGTGAGTTTGTCTTCGGCGAGGAGGAGGC
GGGCGAAGGGAAGACCGAGATCGAAGGCAGCGGCGCGAAAGCAAGCGCGG
AGCACGAGAGCGGCTGCTGGTTTTGAAGCTACCGGCAGGGTAAGGATTTG
GGTAGCCTTTTCGTAGATACGCACGGCACGATTACCCTTGCCTAGCTTCT
CGGCCGCTAGTAAGGCGACTTGCAACAGATTGCGCGTGGCTGGACAAGAA
GGGTTTAGCTGAGAGAGATAGGAAGTGGGATGGGACCGGGAGGCAGTTGA
GTAAGCAGTGTTTCTTTTGATTTGATTCATTCATGACAAGATCCGAACAG
ACATGGACTCGGGAGAGTCGTGAGAGATTACATAGAAACAAGGAGGAAAA
CACAAGCGTCAGCCCATCGACGCACCTCTTCTTTACGCTCGAACAAAATG
TAGGTATCGAGCGCCGTTACCCAGTTTTCCATCTCGGCCGCCAGTAGCGC
AGTGGCCTCGTACCATTGCGGCTTTCGGGGCAGGTTATCTCTGGACATAT
ACCGCAGTAAACTTAGGCATTCGAAGGGCCTCTGCGCAGCGCGGCAGACT
GAGAAGGCAGCATCGTAATCAGGCAAATGTCGAACTGTCAAGCCCTGAAG
ATGCTCAAAAGTTCGGTGCCACTCCTCTTTTTTGTCCCCATTTTCTACCA
AAGACGAAGCAGAAGTGTCCGAGGATGAAGCAGCTCGCCCACGAGGCAAG
GACTTTTGGGGAGCGACATGAGAGGGAGGGGTGGGCGCAGGTGTTCGACT
GCCATTTCCTCTTCTTTTTGAGGACGAAGATCGCTTGTCAGGATTATGGA
TATAGCCTGGCCCAGAAGCTGTCGTTGCTCTCAGGAGGACGTGCTTGTGG
CTTGGAGCGGTTGTGATGAAGGTGTGTATGCGGCGACGTTCAAGGTTGAT
GTGAGAAGTAGAGGGAAAGACGAATGCTTCCACGATTGTCCGCCGCCACG
CCACGAAAAGCATGTATATGCAGTACATGCTTCGCCACAACATCCCCAGT
CTTTGCCCTGATGATGGGGAACGGGTTGCTGCCGAGATTTGATGCGGGGG
CATCTGTATTGGCTTTGTTGAGGGGGGCGACGTGTCCATGGGGTCCTCCA
TCCGAGATGGCTAGGGGAGAAGACTTAAGAAACAAAAGACGTGCCCGCTT
CCTGTCATTGATTGTAAACAAAGGATATCATAAAGCAGGTCTGAGGATTT
GGAGAGAATTTGCCACCTAGAATGGGGCTTGGACCAGGCACAACACGTGT
GCGTGTGTATCCAGAGGCAGGCCCAAGTTGAGCTTCTCGCCATTTCGACC
TCCCCTCTTCCCCCCTCCCTGGATATGTGCCCACCCACTCACCTTCACGG
GCAATATCACCGAAAGAAAAAAACAAAACAAAGTAAGGCGGGATACTCTT
TTTTCTTTTAGGCGCGCGCGGTGCTGTTGTTGGGACCTAGTAAACTAGTC
GGAAAGCAGTCAGCTCTTTCTTTTTTTCCCTTCACGCATTTTTTGTCGGT
CACCGAGTGGACAAAAAATAAGAAAAGCTCTCCTCCTTTCCCTTCCTCTC
CCCTGCCCTGCTTTCTATCATTCGCGTTTTACACTTGAAGCTGGATCTGC
AGGCTCGGTCTGGCGTTGGTTTGTGAGCACCTCAATGTTGCCGCCACCAT
TCTCCTGTGCCAGCTGCGCCAAACTCCCCCCTTGAGCCTGCCGGGCCAAC
TCCAAATCAATCGTGGACAGGAGGCGTTGCTCTTCGTCTGTGTATTGCTT
CACGCCCGTGCGGGCCGTCACTTGGATAAGGGCGTCCCGGCGGATCTAGA
AATGAAGAAGAAAGAAAGGAAAAGCCAGGAAGCAAGGGTTCATTTGAGTA
TGAGATACACCAAGGAGCTCAGGGCCAAAAAATAACTGAATTGCAACACG
TTTACCACTCCCGTACTAAACGAGGACACTCTCGACCCGCCATTCTCGTA
CCTGGCTGCCTGCAATAGCCACAGGCTTGGAAATCCCGAAGCCCAAAAGA
TCATTTTCATTGGCAGTGGAGAACTTTCCGTCCAGGTCTAGCAAGGCGGA
GATACCAAGGTCGTCAAATGCGCGGTTATCTTTCTCCCAGGTTTCCTTAG
TCAGGGGGAAGAGCAAATTGTTGAAGGTGAGCTCGAAGGTGTAGGGAAAT
TCTAAGCCTTGCAGCTTGATCCTGTCATCAAGAGAGAGAGGGAGGTGGGG
AGAAGCACGCGAGTGAGTTTCCAGGAATGCGAACGGATATACCATCAGCC
GTGATAGTCGAACTCACTTTTTCGCGGCTACTGGTCCACCTTCCCGCCCA
TAGCACGTGATGAGGAGGGCGGCATCATTGTTCTCCAGCGCGTAGTTCAG
TTGTGCCGGTCGCTCAGGCCCAAAGGGATAACCCTCAATCTCCGGCAGCC
GAATCATGCCCCGGGCAATCACGTCGGACAGATCCTTGTTCTCCTCTTTC
AGCGATTTCGGCTCCTCCTTGACTCCTGTTTTCTTGATCTGAATTGATGT
GTAATCGGGAAGAGATGAGGGAACAGGTTGGAGTGATGGGAAGGGAGAGG
AGTATCGTGGATAGAGAAGATAGCAACGCGGGGGGCAGTAGAGGGCCCGA
GCATGTGTATCACACAGCCACAAAACCATCACGCGACGCCACGCCACGTC
TAGACCTCCATCAATGTGTACGCACCAGTCTTGATGTCGTCTGCTTGTCA
TTAGCCGTCGTCGATGGCGCTGCCCACGCACCAGGCAGTCCTCCGCCCCC
CAGGAAGGTTGACAATAGCACACCGGTTGCGGCAAGCGAACGCCCCACCA
CAGACATGCCGACAGCTGGGATCTTACTCTTGCCTCGCTCGCCCTTGTCG
GCCTGCATAACCATTCTGCTGGCCCCTCTATGGGCAAGAGGCGTAGGCAT
GAAGGCAAAGCACGGGCTCAAAAGCAACAGCCCCGCTGCTGCCACGACAC
CACCTCGAATCATTCTGCTGACTGCTTAGACAAGGTCGCTGTGTGTTGTG
TGCGCAGTGGTGGGAGTAATGGATGGCATTGTCCAGTCAGGAGGAGACTA
AGGCGCTGCTGGTTGAGGTCGGGAGTGAGGGTCAACATGATGCTCGCTCT
CTGAACCGTCTTGAGGTACAACCCGCACACGCCACGCACAGTCCAAATGC
TGCCATGGCGACCAAGCCAGGACTGAGCGGGCCACGGATAGGGTATAAGC
TCGAGCAAGGTCGCACAGACTGCTGCCAGTGCAATCCTCACAACCAACAA
GCCTCAAAGCAACCTCCTCCTTCCTTCGCTCCCGCCTCGACAGCAAATGG
GGCCATACTGCTGTCCGTGTTGCTGGCCCGTCGCGGCCGTAGCTACTCTG
GTCCCATCCATATCACTACCCGCAGCAGCGGCGACCACGAATCCAGCTCC
ACCATCGGCCGCCCCCGCCGCAGTTGCAGTCGCAGACCCTCACACGCCGC
CCATCCCCGCATGTATGATTGTGGATGGTCGAGCCCCCGCTTTCGAGCAG
GGCATACTCCGGCTGGGCCTGCAGATTGGTACGGAGACCATAACCCCCGG
ACAACGGGAGCTACTTCTTTCGCTCTTACCCGAGGGCGATGTACACAAGC
TGCAGGGTTTCTACCACGACAAGGACAGGCGGCTGGCGTTGGGAAGCCTG
CTACTGCAGCGCGCTGCTACCAGTTGGGTTTTGGGTCAGCGCTTCAAGGA
CATCCTAATCCAACGCACACAACCATATAACAAGCCCTATGTGGAAGCGG
CGGGGACACGGCTTCCTGGGTGGAACTACAATGTGTCGCATCACGGGGAT
TGGGTAGTGCTGGCCAGCGAGCCTTCGGGTACAGTAGGGACAGATGTGGT
GTGCTTGCAGGATCGGCCTTTCCAGGCCATGACAGCATCGGAGTATATCG
ACCTTTTCCGCCGTCATTTGACGCCGGCAGAGCGCGATGGATTGGAGGGA
TTGGCACCGAAAGGGGAGACTGCTCAGTATCGTGCGTTCTTCCGGGTGTG
GGCGATGAAGGAGGCTTATATCAAGGCATTGGGAGTGGGATTGTCGTTTC
CCATTCGACGATTGGAATGCAGTATCCTGGACGTTGGGAAGGATTATTTG
AAGAGGGTAGAAGATGAAGGGGAAGAGGAGGAGTTGATGATGGATGGGTA
TGGCATGGCCGATTGGAAGCTTCGGTTTTTGGCTTTGCCGCCGGATGGAT
GTTATTTGTGGTGTACCGCCGTGGGACCTGCGCCCTCTCCTCATTTCCAG
GATGTAGGAGGTATCGGAGGGACAGCAGCGGTAGGTATAAGCACGGTCGA
TGGTGATTGTAACCCATGCAATGGCTACTTCTCTACCGTCCCCTTCTCGG
CAGCGGCAAGTCAAGATGCTGCGCTGTTAACGGCAACGGCAGCGGCAGCA
GCCACCAAGGCGCCGGCATCGGGCCATACACAACAGAGGTTGCGGAGGCA
GTATCACGTACTTAGCATTCGAGATATTTTACCTTGGTCGGTTCAAGCTG
AGTGGGATGCCTCAGGAGGAGGAAGTGGTAGCACGGAAGCAGCAGCAGCA
GCAGCAGTATCCGTGTCAACTCAAGATTGAGAAGTGTAGCATACTGTATG
TGAATGAGTCCTG back to topCoding sequence (CDS) from alignment at scaffold_10:752347..757909- >mRNA_4500 ID=mRNA_4500|Name=jgi.p|Nanoce1779_2|589333|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_10:752347..757909- (Nannochloropsis oceanica)
ATGGGGCCATACTGCTGTCCGTGTTGCTGGCCCGTCGCGGCCGTAGCTAC
TCTGGTCCCATCCATATCACTACCCGCAGCAGCGGCGACCACGAATCCAG
CTCCACCATCGGCCGCCCCCGCCGCAGTTGCAGTCGCAGACCCTCACACG
CCGCCCATCCCCGCATGTATGATTGTGGATGGTCGAGCCCCCGCTTTCGA
GCAGGGCATACTCCGGCTGGGCCTGCAGATTGGTACGGAGACCATAACCC
CCGGACAACGGGAGCTACTTCTTTCGCTCTTACCCGAGGGCGATGTACAC
AAGCTGCAGGGTTTCTACCACGACAAGGACAGGCGGCTGGCGTTGGGAAG
CCTGCTACTGCAGCGCGCTGCTACCAGTTGGGTTTTGGGTCAGCGCTTCA
AGGACATCCTAATCCAACGCACACAACCATATAACAAGCCCTATGTGGAA
GCGGCGGGGACACGGCTTCCTGGGTGGAACTACAATGTGTCGCATCACGG
GGATTGGGTAGTGCTGGCCAGCGAGCCTTCGGGTACAGTAGGGACAGATG
TGGTGTGCTTGCAGGATCGGCCTTTCCAGGCCATGACAGCATCGGAGTAT
ATCGACCTTTTCCGCCGTCATTTGACGCCGGCAGAGCGCGATGGATTGGA
GGGATTGGCACCGAAAGGGGAGACTGCTCAGTATCGTGCGTTCTTCCGGG
TGTGGGCGATGAAGGAGGCTTATATCAAGGCATTGGGAGTGGGATTGTCG
TTTCCCATTCGACGATTGGAATGCAGTATCCTGGACGTTGGGAAGGATTA
TTTGAAGAGGGTAGAAGATGAAGGGGAAGAGGAGGAGTTGATGATGGATG
GGTATGGCATGGCCGATTGGAAGCTTCGGTTTTTGGCTTTGCCGCCGGAT
GGATGTTATTTGTGGTGTACCGCCGTGGGACCTGCGCCCTCTCCTCATTT
CCAGGATGTAGGAGGTATCGGAGGGACAGCAGCGGTAGGTATAAGCACGG
TCGATGGTGATTGTAACCCATGCAATGGCTACTTCTCTACCGTCCCCTTC
TCGGCAGCGGCAAGTCAAGATGCTGCGCTGTTAACGGCAACGGCAGCGGC
AGCAGCCACCAAGGCGCCGGCATCGGGCCATACACAACAGAGGTTGCGGA
GGCAGTATCACGTACTTAGCATTCGAGATATTTTACCTTGGTCGGTTCAA
GCTGAGTGGGATGCCTCAGGAGGAGGAAGTGGTAGCACGGAAGCAGCAGC
AGCAGCAGCAGTATCCGTGTCAACTCAAGATTGA back to top
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