jgi.p|Nanoce1779_2|636787, mRNA_450 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636787
Unique NamemRNA_450
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1356
Alignment locationscaffold_3:1109044..1110399 -

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Properties
Property NameValue
TranscriptId636873
TrackFilteredModels2
ProteinId636787
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1109044..1110399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636787gene_450Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_450CDS_450Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636787mRNA_450-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_450 ID=mRNA_450|Name=jgi.p|Nanoce1779_2|636787|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
ATGCCGTCCAACCGAGAAACACGGTGCCTGATCCAAGACTGGGTTATAAA
GCACAAACAATTGCAAGACGACATGCTTTCTGGGGAAAAGCCCAAACGCT
TTTTGGTCGTGCGACCCGACTGTGGATATTGCGGGATGTGCAATATATTG
GATGCCATCACCGGGACATATTTATTGGCCGTCTTGACAGATCGTGCTTT
GGTGATCGATTGGAGATATCCAGGCAAGCGTGGATGGCAGGAGGGCACCA
ATTACTTGGATCCTCGGCTTGTGAATTGGAAGGCTCAAAGCGCCGTGGGT
GCTGATACGTTTGATTGGTCCGGAAACAAAACCCTGTTGCTGCATGGGTG
GAACGATGGGGCGACAATCAAAGATCTGCTGAAGATTCCTGAAGTATTTA
GTGAGACGTTAGATGTTGAGGAGAATGAAGCCATCATTTTGGTGCATATG
GGACAGAGTCCCGCGACGAGCTTGAGAATTAACCCGGAGGCCAAGAAGCG
GGCAGTTGCCAAGGGGCTCTTGGCTGAAGACACAGTGTGGGATGAACATT
GGGACCAGCAGTTCAAGGGATGTGCGTTGCGTGTATTGTTTCAACCTTCC
AAAATATTGAAGGATTTTTATTGTCAAGTGCAGGGGGAGGGGTCGTCGGA
AGGGATTGGGGTGCATGTGAGGACGGGCGATGACCGAACCTGGAATGAAA
AGTATGCTTACCCAACCGACGAGCATTATCGATTCGCGCGCTGTGCAGAG
GGGATGCGGCAAGCCATGTTGGAAGATGACTTTAAAGCAATGGTTGGGGC
GGTTGCTTCTGAGGGTGGAAGAAGGGTAAATGTGGAACGGTGGCATGTGG
CTTCGGATTACCAGCAGGTGGTCGATGATATCCGGGCGCGGTTTCCCGAG
CAGGTTGCGTCAATGGATACGTTTGAAAGCGAGGAAATGAAACAAGCAGG
GGCCATCCGCGTGCACTATTCCAATACCCCATACCAGCAATTTGCGCTCG
GGCCGTTGATGGATCTGATCAAGTTGTCGAGTGGGCTGGCGGTGATTGGT
ACATGTCGAAGCACTTATAGTGCCGCTGCGGGCTCTTTTGGGATGCTGCC
AAATGAGCTAACGCTGTTGAAACGCACCAATTTTGAGATGAGGTACTTTC
ACTCCACTGCGTGTCCGGAGATGCCGAAAGAGGATGAGGCGGAGGGGATG
TGCCGCGAGCTCTTGGAGTCAAACAGGAAGTTAGTCGAAGAGGTGTTGAG
GACACCGCCATTCATCACTTGTCCTTTATTTGGTGAAAGTGGTGACGCTG
ATGATGGCGGTGGTGGTGGTAAATATGATGATCTGAGGAGTAGGATAAAT
AGATGA
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protein sequence of jgi.p|Nanoce1779_2|636787

>mRNA_450-protein ID=mRNA_450-protein|Name=jgi.p|Nanoce1779_2|636787|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MPSNRETRCLIQDWVIKHKQLQDDMLSGEKPKRFLVVRPDCGYCGMCNIL
DAITGTYLLAVLTDRALVIDWRYPGKRGWQEGTNYLDPRLVNWKAQSAVG
ADTFDWSGNKTLLLHGWNDGATIKDLLKIPEVFSETLDVEENEAIILVHM
GQSPATSLRINPEAKKRAVAKGLLAEDTVWDEHWDQQFKGCALRVLFQPS
KILKDFYCQVQGEGSSEGIGVHVRTGDDRTWNEKYAYPTDEHYRFARCAE
GMRQAMLEDDFKAMVGAVASEGGRRVNVERWHVASDYQQVVDDIRARFPE
QVASMDTFESEEMKQAGAIRVHYSNTPYQQFALGPLMDLIKLSSGLAVIG
TCRSTYSAAAGSFGMLPNELTLLKRTNFEMRYFHSTACPEMPKEDEAEGM
CRELLESNRKLVEEVLRTPPFITCPLFGESGDADDGGGGGKYDDLRSRIN
R*
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mRNA from alignment at scaffold_3:1109044..1110399-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_450 ID=mRNA_450|Name=jgi.p|Nanoce1779_2|636787|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at scaffold_3:1109044..1110399- (Nannochloropsis oceanica)
ATGCCGTCCAACCGAGAAACACGGTGCCTGATCCAAGACTGGGTTATAAA
GCACAAACAATTGCAAGACGACATGCTTTCTGGGGAAAAGCCCAAACGCT
TTTTGGTCGTGCGACCCGACTGTGGATATTGCGGGATGTGCAATATATTG
GATGCCATCACCGGGACATATTTATTGGCCGTCTTGACAGATCGTGCTTT
GGTGATCGATTGGAGATATCCAGGCAAGCGTGGATGGCAGGAGGGCACCA
ATTACTTGGATCCTCGGCTTGTGAATTGGAAGGCTCAAAGCGCCGTGGGT
GCTGATACGTTTGATTGGTCCGGAAACAAAACCCTGTTGCTGCATGGGTG
GAACGATGGGGCGACAATCAAAGATCTGCTGAAGATTCCTGAAGTATTTA
GTGAGACGTTAGATGTTGAGGAGAATGAAGCCATCATTTTGGTGCATATG
GGACAGAGTCCCGCGACGAGCTTGAGAATTAACCCGGAGGCCAAGAAGCG
GGCAGTTGCCAAGGGGCTCTTGGCTGAAGACACAGTGTGGGATGAACATT
GGGACCAGCAGTTCAAGGGATGTGCGTTGCGTGTATTGTTTCAACCTTCC
AAAATATTGAAGGATTTTTATTGTCAAGTGCAGGGGGAGGGGTCGTCGGA
AGGGATTGGGGTGCATGTGAGGACGGGCGATGACCGAACCTGGAATGAAA
AGTATGCTTACCCAACCGACGAGCATTATCGATTCGCGCGCTGTGCAGAG
GGGATGCGGCAAGCCATGTTGGAAGATGACTTTAAAGCAATGGTTGGGGC
GGTTGCTTCTGAGGGTGGAAGAAGGGTAAATGTGGAACGGTGGCATGTGG
CTTCGGATTACCAGCAGGTGGTCGATGATATCCGGGCGCGGTTTCCCGAG
CAGGTTGCGTCAATGGATACGTTTGAAAGCGAGGAAATGAAACAAGCAGG
GGCCATCCGCGTGCACTATTCCAATACCCCATACCAGCAATTTGCGCTCG
GGCCGTTGATGGATCTGATCAAGTTGTCGAGTGGGCTGGCGGTGATTGGT
ACATGTCGAAGCACTTATAGTGCCGCTGCGGGCTCTTTTGGGATGCTGCC
AAATGAGCTAACGCTGTTGAAACGCACCAATTTTGAGATGAGGTACTTTC
ACTCCACTGCGTGTCCGGAGATGCCGAAAGAGGATGAGGCGGAGGGGATG
TGCCGCGAGCTCTTGGAGTCAAACAGGAAGTTAGTCGAAGAGGTGTTGAG
GACACCGCCATTCATCACTTGTCCTTTATTTGGTGAAAGTGGTGACGCTG
ATGATGGCGGTGGTGGTGGTAAATATGATGATCTGAGGAGTAGGATAAAT
AGATGA
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Coding sequence (CDS) from alignment at scaffold_3:1109044..1110399-

>mRNA_450 ID=mRNA_450|Name=jgi.p|Nanoce1779_2|636787|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_3:1109044..1110399- (Nannochloropsis oceanica)
ATGCCGTCCAACCGAGAAACACGGTGCCTGATCCAAGACTGGGTTATAAA
GCACAAACAATTGCAAGACGACATGCTTTCTGGGGAAAAGCCCAAACGCT
TTTTGGTCGTGCGACCCGACTGTGGATATTGCGGGATGTGCAATATATTG
GATGCCATCACCGGGACATATTTATTGGCCGTCTTGACAGATCGTGCTTT
GGTGATCGATTGGAGATATCCAGGCAAGCGTGGATGGCAGGAGGGCACCA
ATTACTTGGATCCTCGGCTTGTGAATTGGAAGGCTCAAAGCGCCGTGGGT
GCTGATACGTTTGATTGGTCCGGAAACAAAACCCTGTTGCTGCATGGGTG
GAACGATGGGGCGACAATCAAAGATCTGCTGAAGATTCCTGAAGTATTTA
GTGAGACGTTAGATGTTGAGGAGAATGAAGCCATCATTTTGGTGCATATG
GGACAGAGTCCCGCGACGAGCTTGAGAATTAACCCGGAGGCCAAGAAGCG
GGCAGTTGCCAAGGGGCTCTTGGCTGAAGACACAGTGTGGGATGAACATT
GGGACCAGCAGTTCAAGGGATGTGCGTTGCGTGTATTGTTTCAACCTTCC
AAAATATTGAAGGATTTTTATTGTCAAGTGCAGGGGGAGGGGTCGTCGGA
AGGGATTGGGGTGCATGTGAGGACGGGCGATGACCGAACCTGGAATGAAA
AGTATGCTTACCCAACCGACGAGCATTATCGATTCGCGCGCTGTGCAGAG
GGGATGCGGCAAGCCATGTTGGAAGATGACTTTAAAGCAATGGTTGGGGC
GGTTGCTTCTGAGGGTGGAAGAAGGGTAAATGTGGAACGGTGGCATGTGG
CTTCGGATTACCAGCAGGTGGTCGATGATATCCGGGCGCGGTTTCCCGAG
CAGGTTGCGTCAATGGATACGTTTGAAAGCGAGGAAATGAAACAAGCAGG
GGCCATCCGCGTGCACTATTCCAATACCCCATACCAGCAATTTGCGCTCG
GGCCGTTGATGGATCTGATCAAGTTGTCGAGTGGGCTGGCGGTGATTGGT
ACATGTCGAAGCACTTATAGTGCCGCTGCGGGCTCTTTTGGGATGCTGCC
AAATGAGCTAACGCTGTTGAAACGCACCAATTTTGAGATGAGGTACTTTC
ACTCCACTGCGTGTCCGGAGATGCCGAAAGAGGATGAGGCGGAGGGGATG
TGCCGCGAGCTCTTGGAGTCAAACAGGAAGTTAGTCGAAGAGGTGTTGAG
GACACCGCCATTCATCACTTGTCCTTTATTTGGTGAAAGTGGTGACGCTG
ATGATGGCGGTGGTGGTGGTAAATATGATGATCTGAGGAGTAGGATAAAT
AGATGA
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Synonyms
Publications