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Properties
| Property Name | Value |
|---|
| TranscriptId | 668251 |
| Track | FilteredModels2 |
| ProteinId | 668165 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:127085..129792 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_45 ID=mRNA_45|Name=jgi.p|Nanoce1779_2|668165|organism=Nannochloropsis oceanica|type=mRNA|length=2129bp
CCTCTTCGATCACTCACACACAACTTTTGTTCTACCAACACCTCTCCTAA
GCGCAATTCTTTCTTTATCTCTATCCCTCGGCATTTGTCTTGGCTGCATG
GGCGGGAACTTCTACTCAGTTTTGTTTCCTCGCCATGCATTGAAAATCAC
AACAATGTCAAATCAATCGCTTCTATCATCGACCTCATACCCACCCCAAA
GGACCTCCACATCCACTGACATACGACACCGGCATGGCCTCCACTCCCGC
ATCTACCATCAGCACTATCTCTTCTAGCCCTCCACCCAAAAAGAAAGCCA
AGTCCTCCTCGTCCCCCTCCTCCTCCTCCCCGTTCATCAACCACTACTGC
GGCTATGTGCCTCCGTTCGGCACCACCACCGTTGATACCCTTGACCTTGC
ATCCTTCCTAGCGACACACGGCGCCGACAAAGCACCTGCTGCCTTCTTCG
AGGAGTACATTGCTTTGCGCAAGCCTGTCCTCATCAAGGGTGTCTTGCCC
GACGAAGCCTGGCTAGCGGGCGTGGGGAGGCTATGGAAGGACCACGAGTA
TTTAAAGAAGAAAGCGGGCAAGGCCTTGGTGAAGGTGGAGACCCGGGGTG
GGATAGATGAGAAATATGGACAAGGAAAAGAAAGGACGATGAGGTTCGAC
GAGTTTGTGGAGGAAGTGGTTGAAAAGGGGAATGAGCTGTTGTACTTGAC
CACTCAAGAACTCGAAGTTGGACCGGAGGACCGTCCTGCCATCATGTCAA
GCCCTCTCACCGAGCTTCAGGATGACTTCCCCCTCCGCCCCTCCCTTCTT
GGTCATCTCGTCCCCCAAAATATGAACCTATGGATGGGTCGCAGTGGCAG
CAGCAGCGGCAGTAGCAGCAGCGGCAGCAGCAGTGGGTTGCACCACGACT
ACCACGACAATCTGTACATCTTGCTAAGGGGGCAGAAGACATTCCGTCTC
TTCGCACCCTCCGAAGCCGGCAACATGTATACAGTGGGCAAGTTGAAGCT
GGTGCATCCCAACGGTCGCATCCAATACCATGACCAACCGATGGTCTATG
CTGACGGCCGGGACATGAAGGCGGACAAGGCCTGGGAGGCTGCCAAAAGA
TTGGAAGCAGCAGCAGCAGCAGCAGGTGAAGGAGACGGAGGAGGGGGAGG
CGAGGGAGGGAAGGAAGGAGGGGGAGGAGACAACGAATTGGAGGCGGCAT
TGGAGGCGGTCTTAGATGCGGAGATGGAGGGGAGGGACGAGGACGAGGAC
GAGGACGAGGACGAGGACGAGGAAGCGTGGAATCAGGGAGACAAACCGGC
CAGCCCCGCCCTCCCTCCCTCCCTTTCTCCCCCCTCTTCCTCCATCGCTT
CCTTCACTACCACCTACACTCCCTCGGGAGAACACCCCGCAAATTTCTCT
CGCGTGGACCTGACTGCGCCTGGTGGGGTGGACTACGCCCTCTATCCCTC
TTTCCCCCGGCACCTCCCCCTCGAGGTGGAAGTGAGTGAAGGAGAGATGT
TTTACGTACCAGCGGGATGGTTCCATGAAGTCAGGAGCAAGGGAGGGGTG
CATGCGGCTTTTAACTATTGGGTTCATCCGCCCGATGCCCTGGGGACGGA
GGGCGGGACGGAGGGCGGGACGGAGGGCGGTTTCGAGCGGCCTTACGTGA
GTGATTTTTGGGAGAGGGACTGGAGGGAACGAGGGAGGGTGAGGGGAGGG
GGCTTGGGAGGGATCTAGGCCATCTCTTCATGTACAGTAGGAAGAGACAC
GCGTACCGAAAGAAAGGGGAGGCACAAAAAACAGAGAGATAGTGCTATCG
CCTCCGTCTCCTTCTCCCCCTTATTTCGCTTGGGTGGTCCGATGGTAGTA
TTTCTTCATTTCTTTCTTTCTCACAGCGAACGGTCGTCGCTGTTGCTTCC
TTTCTTGTGCCCATTCGTCGGCCACTCACATTTCCCCCCTCCTTCCTTCC
TTTCCTCCCTCCCTCCCTCTCTTCCTCCCTCGACTAACACATGCAGGCAG
GAGATACTTTAGGGGATACTTTTTGACCTTACCGTCTCGTCACTCCTTCC
CTCCCTCCCTCTCTCCCCCCCTCCCCATCTCCCTCCATAGTACTAAAGAT
ACAAATTTTCAATCTTCTATGTTACACCC back to topprotein sequence of jgi.p|Nanoce1779_2|668165 >mRNA_45-protein ID=mRNA_45-protein|Name=jgi.p|Nanoce1779_2|668165|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MASTPASTISTISSSPPPKKKAKSSSSPSSSSPFINHYCGYVPPFGTTTV
DTLDLASFLATHGADKAPAAFFEEYIALRKPVLIKGVLPDEAWLAGVGRL
WKDHEYLKKKAGKALVKVETRGGIDEKYGQGKERTMRFDEFVEEVVEKGN
ELLYLTTQELEVGPEDRPAIMSSPLTELQDDFPLRPSLLGHLVPQNMNLW
MGRSGSSSGSSSSGSSSGLHHDYHDNLYILLRGQKTFRLFAPSEAGNMYT
VGKLKLVHPNGRIQYHDQPMVYADGRDMKADKAWEAAKRLEAAAAAAGEG
DGGGGGEGGKEGGGGDNELEAALEAVLDAEMEGRDEDEDEDEDEDEEAWN
QGDKPASPALPPSLSPPSSSIASFTTTYTPSGEHPANFSRVDLTAPGGVD
YALYPSFPRHLPLEVEVSEGEMFYVPAGWFHEVRSKGGVHAAFNYWVHPP
DALGTEGGTEGGTEGGFERPYVSDFWERDWRERGRVRGGGLGGI* back to topmRNA from alignment at scaffold_3:127085..129792- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_45 ID=mRNA_45|Name=jgi.p|Nanoce1779_2|668165|organism=Nannochloropsis oceanica|type=mRNA|length=2708bp|location=Sequence derived from alignment at scaffold_3:127085..129792- (Nannochloropsis oceanica)
CCTCTTCGATCACTCACACACAACTTTTGTTCTACCAACACCTCTCCTAA
GCGCAATTCTTTCTTTATCTCTATCCCTCGGCATTTGTCTTGGCTGCATG
GGCGGGAACTTCTACTCAGTTTTGTTTCCTCGCCATGCATTGAAAATCAC
AACAATGTCAAATCAATCGCTTCTATCATCGACCTCATACCCACCCCAAA
GGACCTCCACATCCACTGACATACGACACCGGCATGGCCTCCACTCCCGC
ATCTACCATCAGCACTATCTCTTCTAGCCCTCCACCCAAAAAGAAAGCCA
AGTCCTCCTCGTCCCCCTCCTCCTCCTCCCCGTTCATCAACCACTACTGC
GGCTATGTGCCTCCGTTCGGCACCACCACCGTTGATACCCTTGACCTTGC
ATCCTTCCTAGCGACACACGGCGCCGACAAAGCACCTGCTGCCTTCTTCG
AGGAGTACATTGCTTTGCGCAAGCCTGTCCTCATCAAGGGTGTCTTGCCC
GACGAAGCCTGGCTAGCGGGCGTGGGGAGGCTATGGAAGGACCACGAGTA
TTTAAAGAAGAAAGCGGGCAAGGCCTTGGTGAAGGTGGAGACCCGGGGTG
GGATAGATGAGAAATATGGACAAGGAAAAGAAAGGACGATGAGGTTCGAC
GAGTTTGTGGAGGAAGTGGTTGAAAAGGGGAATGAGCTGTTGTACTTGGT
AAGGTGGGAGAGGGGCGGGCGGGAAGGAGGGAGGGAGAGAGGGAGAGAGG
GAGAGAGGGAGAGGGGAGGATAAAAGAGCAGAGAAGAATGCAGGAAAAGG
ATGCATTTACTACCTTATACTTACAAGCGCCTTGTAATTGTGTATTGTTC
ACTCCTTTTCTTCCTTCCTTTCTCCCTCCCTCCCTCCATTCTCCTAGACC
ACTCAAGAACTCGAAGTTGGACCGGAGGACCGTCCTGCCATCATGTCAAG
CCCTCTCACCGAGCTTCAGGATGACTTCCCCCTCCGCCCCTCCCTTCTTG
GTCATCTCGTCCCCCAAAATATGAACCTATGGATGGGTCGCAGTGGCAGC
AGCAGCGGCAGTAGCAGCAGCGGCAGCAGCAGTGGGTTGCACCACGACTA
CCACGACAATCTGTACATCTTGCTAAGGGGGCAGAAGACATTCCGTCTCT
TCGCACCCTCCGAAGCCGGCAACATGTATACAGTGGGCAAGTTGAAGCTG
GTGCATCCCAACGGGTACGTCCTCCCTCCATCCCGCCCGCCCTCCTTCCC
ATGCTTCTACTCGTCGCGTCCTATGCTTTTTCTCACTCGCACTATGAGAC
TTGCTCACACTCACACTCACACACACACACACACACACTTGCTCTCTCTG
TCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC
ACACACACACTCACACACACACACACACATGTTTATATATACATATATAT
AAACATATTCATGTATATAATACCAATTGTCTATGTCGACACTCCCACAC
ACTCGCAAGAACGAAAAACACACTCGCACGCACACACTTATTCACACATC
TACCCGCATATACACACACATGTATACATACGCCCTCCTCGCAGTCGCAT
CCAATACCATGACCAACCGATGGTCTATGCTGACGGCCGGGACATGAAGG
CGGACAAGGCCTGGGAGGCTGCCAAAAGATTGGAAGCAGCAGCAGCAGCA
GCAGGTGAAGGAGACGGAGGAGGGGGAGGCGAGGGAGGGAAGGAAGGAGG
GGGAGGAGACAACGAATTGGAGGCGGCATTGGAGGCGGTCTTAGATGCGG
AGATGGAGGGGAGGGACGAGGACGAGGACGAGGACGAGGACGAGGACGAG
GAAGCGTGGAATCAGGGAGACAAACCGGCCAGCCCCGCCCTCCCTCCCTC
CCTTTCTCCCCCCTCTTCCTCCATCGCTTCCTTCACTACCACCTACACTC
CCTCGGGAGAACACCCCGCAAATTTCTCTCGCGTGGACCTGACTGCGCCT
GGTGGGGTGGACTACGCCCTCTATCCCTCTTTCCCCCGGCACCTCCCCCT
CGAGGTGGAAGTGAGTGAAGGAGAGATGTTTTACGTACCAGCGGGATGGT
TCCATGAAGTCAGGAGCAAGGGAGGGGTGCATGCGGCTTTTAACTATTGG
GTTCATCCGCCCGATGCCCTGGGGACGGAGGGCGGGACGGAGGGCGGGAC
GGAGGGCGGTTTCGAGCGGCCTTACGTGAGTGATTTTTGGGAGAGGGACT
GGAGGGAACGAGGGAGGGTGAGGGGAGGGGGCTTGGGAGGGATCTAGGCC
ATCTCTTCATGTACAGTAGGAAGAGACACGCGTACCGAAAGAAAGGGGAG
GCACAAAAAACAGAGAGATAGTGCTATCGCCTCCGTCTCCTTCTCCCCCT
TATTTCGCTTGGGTGGTCCGATGGTAGTATTTCTTCATTTCTTTCTTTCT
CACAGCGAACGGTCGTCGCTGTTGCTTCCTTTCTTGTGCCCATTCGTCGG
CCACTCACATTTCCCCCCTCCTTCCTTCCTTTCCTCCCTCCCTCCCTCTC
TTCCTCCCTCGACTAACACATGCAGGCAGGAGATACTTTAGGGGATACTT
TTTGACCTTACCGTCTCGTCACTCCTTCCCTCCCTCCCTCTCTCCCCCCC
TCCCCATCTCCCTCCATAGTACTAAAGATACAAATTTTCAATCTTCTATG
TTACACCC back to topCoding sequence (CDS) from alignment at scaffold_3:127085..129792- >mRNA_45 ID=mRNA_45|Name=jgi.p|Nanoce1779_2|668165|organism=Nannochloropsis oceanica|type=CDS|length=4455bp|location=Sequence derived from alignment at scaffold_3:127085..129792- (Nannochloropsis oceanica)
TCGCATCCAATACCATGACCAACCGATGGTCTATGCTGACGGCCGGGACA
TGAAGGCGGACAAGGCCTGGGAGGCTGCCAAAAGATTGGAAGCAGCAGCA
GCAGCAGCAGGTGAAGGAGACGGAGGAGGGGGAGGCGAGGGAGGGAAGGA
AGGAGGGGGAGGAGACAACGAATTGGAGGCGGCATTGGAGGCGGTCTTAG
ATGCGGAGATGGAGGGGAGGGACGAGGACGAGGACGAGGACGAGGACGAG
GACGAGGAAGCGTGGAATCAGGGAGACAAACCGGCCAGCCCCGCCCTCCC
TCCCTCCCTTTCTCCCCCCTCTTCCTCCATCGCTTCCTTCACTACCACCT
ACACTCCCTCGGGAGAACACCCCGCAAATTTCTCTCGCGTGGACCTGACT
GCGCCTGGTGGGGTGGACTACGCCCTCTATCCCTCTTTCCCCCGGCACCT
CCCCCTCGAGGTGGAAGTGAGTGAAGGAGAGATGTTTTACGTACCAGCGG
GATGGTTCCATGAAGTCAGGAGCAAGGGAGGGGTGCATGCGGCTTTTAAC
TATTGGGTTCATCCGCCCGATGCCCTGGGGACGGAGGGCGGGACGGAGGG
CGGGACGGAGGGCGGTTTCGAGCGGCCTTACGTGAGTGATTTTTGGGAGA
GGGACTGGAGGGAACGAGGGAGGGTGAGGGGAGGGGGCTTGGGAGGGATC
TAGACCACTCAAGAACTCGAAGTTGGACCGGAGGACCGTCCTGCCATCAT
GTCAAGCCCTCTCACCGAGCTTCAGGATGACTTCCCCCTCCGCCCCTCCC
TTCTTGGTCATCTCGTCCCCCAAAATATGAACCTATGGATGGGTCGCAGT
GGCAGCAGCAGCGGCAGTAGCAGCAGCGGCAGCAGCAGTGGGTTGCACCA
CGACTACCACGACAATCTGTACATCTTGCTAAGGGGGCAGAAGACATTCC
GTCTCTTCGCACCCTCCGAAGCCGGCAACATGTATACAGTGGGCAAGTTG
AAGCTGGTGCATCCCAACGGATGGCCTCCACTCCCGCATCTACCATCAGC
ACTATCTCTTCTAGCCCTCCACCCAAAAAGAAAGCCAAGTCCTCCTCGTC
CCCCTCCTCCTCCTCCCCGTTCATCAACCACTACTGCGGCTATGTGCCTC
CGTTCGGCACCACCACCGTTGATACCCTTGACCTTGCATCCTTCCTAGCG
ACACACGGCGCCGACAAAGCACCTGCTGCCTTCTTCGAGGAGTACATTGC
TTTGCGCAAGCCTGTCCTCATCAAGGGTGTCTTGCCCGACGAAGCCTGGC
TAGCGGGCGTGGGGAGGCTATGGAAGGACCACGAGTATTTAAAGAAGAAA
GCGGGCAAGGCCTTGGTGAAGGTGGAGACCCGGGGTGGGATAGATGAGAA
ATATGGACAAGGAAAAGAAAGGACGATGAGGTTCGACGAGTTTGTGGAGG
AAGTGGTTGAAAAGGGGAATGAGCTGTTGTACTTGTCGCATCCAATACCA
TGACCAACCGATGGTCTATGCTGACGGCCGGGACATGAAGGCGGACAAGG
CCTGGGAGGCTGCCAAAAGATTGGAAGCAGCAGCAGCAGCAGCAGGTGAA
GGAGACGGAGGAGGGGGAGGCGAGGGAGGGAAGGAAGGAGGGGGAGGAGA
CAACGAATTGGAGGCGGCATTGGAGGCGGTCTTAGATGCGGAGATGGAGG
GGAGGGACGAGGACGAGGACGAGGACGAGGACGAGGACGAGGAAGCGTGG
AATCAGGGAGACAAACCGGCCAGCCCCGCCCTCCCTCCCTCCCTTTCTCC
CCCCTCTTCCTCCATCGCTTCCTTCACTACCACCTACACTCCCTCGGGAG
AACACCCCGCAAATTTCTCTCGCGTGGACCTGACTGCGCCTGGTGGGGTG
GACTACGCCCTCTATCCCTCTTTCCCCCGGCACCTCCCCCTCGAGGTGGA
AGTGAGTGAAGGAGAGATGTTTTACGTACCAGCGGGATGGTTCCATGAAG
TCAGGAGCAAGGGAGGGGTGCATGCGGCTTTTAACTATTGGGTTCATCCG
CCCGATGCCCTGGGGACGGAGGGCGGGACGGAGGGCGGGACGGAGGGCGG
TTTCGAGCGGCCTTACGTGAGTGATTTTTGGGAGAGGGACTGGAGGGAAC
GAGGGAGGGTGAGGGGAGGGGGCTTGGGAGGGATCTAGACCACTCAAGAA
CTCGAAGTTGGACCGGAGGACCGTCCTGCCATCATGTCAAGCCCTCTCAC
CGAGCTTCAGGATGACTTCCCCCTCCGCCCCTCCCTTCTTGGTCATCTCG
TCCCCCAAAATATGAACCTATGGATGGGTCGCAGTGGCAGCAGCAGCGGC
AGTAGCAGCAGCGGCAGCAGCAGTGGGTTGCACCACGACTACCACGACAA
TCTGTACATCTTGCTAAGGGGGCAGAAGACATTCCGTCTCTTCGCACCCT
CCGAAGCCGGCAACATGTATACAGTGGGCAAGTTGAAGCTGGTGCATCCC
AACGGATGGCCTCCACTCCCGCATCTACCATCAGCACTATCTCTTCTAGC
CCTCCACCCAAAAAGAAAGCCAAGTCCTCCTCGTCCCCCTCCTCCTCCTC
CCCGTTCATCAACCACTACTGCGGCTATGTGCCTCCGTTCGGCACCACCA
CCGTTGATACCCTTGACCTTGCATCCTTCCTAGCGACACACGGCGCCGAC
AAAGCACCTGCTGCCTTCTTCGAGGAGTACATTGCTTTGCGCAAGCCTGT
CCTCATCAAGGGTGTCTTGCCCGACGAAGCCTGGCTAGCGGGCGTGGGGA
GGCTATGGAAGGACCACGAGTATTTAAAGAAGAAAGCGGGCAAGGCCTTG
GTGAAGGTGGAGACCCGGGGTGGGATAGATGAGAAATATGGACAAGGAAA
AGAAAGGACGATGAGGTTCGACGAGTTTGTGGAGGAAGTGGTTGAAAAGG
GGAATGAGCTGTTGTACTTGTCGCATCCAATACCATGACCAACCGATGGT
CTATGCTGACGGCCGGGACATGAAGGCGGACAAGGCCTGGGAGGCTGCCA
AAAGATTGGAAGCAGCAGCAGCAGCAGCAGGTGAAGGAGACGGAGGAGGG
GGAGGCGAGGGAGGGAAGGAAGGAGGGGGAGGAGACAACGAATTGGAGGC
GGCATTGGAGGCGGTCTTAGATGCGGAGATGGAGGGGAGGGACGAGGACG
AGGACGAGGACGAGGACGAGGACGAGGAAGCGTGGAATCAGGGAGACAAA
CCGGCCAGCCCCGCCCTCCCTCCCTCCCTTTCTCCCCCCTCTTCCTCCAT
CGCTTCCTTCACTACCACCTACACTCCCTCGGGAGAACACCCCGCAAATT
TCTCTCGCGTGGACCTGACTGCGCCTGGTGGGGTGGACTACGCCCTCTAT
CCCTCTTTCCCCCGGCACCTCCCCCTCGAGGTGGAAGTGAGTGAAGGAGA
GATGTTTTACGTACCAGCGGGATGGTTCCATGAAGTCAGGAGCAAGGGAG
GGGTGCATGCGGCTTTTAACTATTGGGTTCATCCGCCCGATGCCCTGGGG
ACGGAGGGCGGGACGGAGGGCGGGACGGAGGGCGGTTTCGAGCGGCCTTA
CGTGAGTGATTTTTGGGAGAGGGACTGGAGGGAACGAGGGAGGGTGAGGG
GAGGGGGCTTGGGAGGGATCTAGACCACTCAAGAACTCGAAGTTGGACCG
GAGGACCGTCCTGCCATCATGTCAAGCCCTCTCACCGAGCTTCAGGATGA
CTTCCCCCTCCGCCCCTCCCTTCTTGGTCATCTCGTCCCCCAAAATATGA
ACCTATGGATGGGTCGCAGTGGCAGCAGCAGCGGCAGTAGCAGCAGCGGC
AGCAGCAGTGGGTTGCACCACGACTACCACGACAATCTGTACATCTTGCT
AAGGGGGCAGAAGACATTCCGTCTCTTCGCACCCTCCGAAGCCGGCAACA
TGTATACAGTGGGCAAGTTGAAGCTGGTGCATCCCAACGGATGGCCTCCA
CTCCCGCATCTACCATCAGCACTATCTCTTCTAGCCCTCCACCCAAAAAG
AAAGCCAAGTCCTCCTCGTCCCCCTCCTCCTCCTCCCCGTTCATCAACCA
CTACTGCGGCTATGTGCCTCCGTTCGGCACCACCACCGTTGATACCCTTG
ACCTTGCATCCTTCCTAGCGACACACGGCGCCGACAAAGCACCTGCTGCC
TTCTTCGAGGAGTACATTGCTTTGCGCAAGCCTGTCCTCATCAAGGGTGT
CTTGCCCGACGAAGCCTGGCTAGCGGGCGTGGGGAGGCTATGGAAGGACC
ACGAGTATTTAAAGAAGAAAGCGGGCAAGGCCTTGGTGAAGGTGGAGACC
CGGGGTGGGATAGATGAGAAATATGGACAAGGAAAAGAAAGGACGATGAG
GTTCGACGAGTTTGTGGAGGAAGTGGTTGAAAAGGGGAATGAGCTGTTGT
ACTTG back to top
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