jgi.p|Nanoce1779_2|589330, mRNA_4499 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589330
Unique Name	mRNA_4499
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	973
Alignment location	scaffold_10:750854..752303 +

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Properties


Property Name	Value
TranscriptId	589416
Track	FilteredModels2
ProteinId	589330

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:750854..752303 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589330	gene_4499	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589330	mRNA_4499-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4499	CDS_4499	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:750854..752303+
coding sequence from alignment at scaffold_10:750854..752303+

mRNA sequence

>mRNA_4499 ID=mRNA_4499|Name=jgi.p|Nanoce1779_2|589330|organism=Nannochloropsis oceanica|type=mRNA|length=973bp
AGACACAGCATCACCATCAACACGCAGTGCATGAAAGCCTTTGCCTTGTC
GAGGAGCCTAGCAATATTTGTGGTGGGTGGGTCACCCTCGTTCGTCACAT
CATCGGCTTTTGTGGGATCGGGCGCGCTTATCAGCTCCCTCAAGAAGGCT
CGTCCATCTCCCCTCTGTCGACGGGTACGTCTCTGGGATAGCTCATCAAA
TTGACATTTCCCTCGTCCTAATCGTAAGCTACCATCCAATCACGCAGTTC
AGCATGGCCGCGGAAAGCGTGTACAACCTTACCGTCGACGATTTTTGTCT
CAGACAGTTCTCGCCTGAATACGGTGGCTCAAAAATCACCATGCCCCCTG
CCGAGTTCGAAGCGAGAGTAAATGCGTATTATCATGCTAATCCACACCTA
GCGGATGGCTACGCCCCATTTTGTAAGCATATTTTTATGCCCAATTTTGC
GGGGTTGACGGCTGGTACGGCGCCCATCACGCCCGAAAATGAGCACTTGC
TGCGTTCTGTGTATGAGGCAAGGACAGAGCAAGAGCTGCCAGTGATGGTT
CGATTCTTCCCGAAAGACCTCGTGCCCCCCAGACGGGCGACGCACCTCGA
CATCATCCTCTACAGCCGAGAGCAGATCCGAAAAGAGAACGCTGACATGG
GTAACCCCGACATGGCCGCCTCTCACGAAACCGCGCCGTGGGGCATCATT
TCTGTGAAGGCTCAAGACGCGGACCATGAGTTGCCCATGCAGCCGATAAC
GATGCTGAGGAATGCCCTGGGCAGGGAGTATGGCGGGTCGGGTGTGGAAT
TGGTCAGGGAGAAGTATTTGGAGAGTGTGGACTTTTGGAGCCAAAATGCG
ATTATTCGATGAGAGGCGTGTGTTTCGGAAGAGCAAAGTACACACCCAAG
GAAGGAAGCAAGGTACCGTGTCGCTGCAGGCAGTCACATGGTGTCACACA
GAGAGAGACGGGACCACTGAATC

protein sequence of jgi.p|Nanoce1779_2|589330

>mRNA_4499-protein ID=mRNA_4499-protein|Name=jgi.p|Nanoce1779_2|589330|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MAAESVYNLTVDDFCLRQFSPEYGGSKITMPPAEFEARVNAYYHANPHLA
DGYAPFCKHIFMPNFAGLTAGTAPITPENEHLLRSVYEARTEQELPVMVR
FFPKDLVPPRRATHLDIILYSREQIRKENADMGNPDMAASHETAPWGIIS
VKAQDADHELPMQPITMLRNALGREYGGSGVELVREKYLESVDFWSQNAI
IR*

mRNA from alignment at scaffold_10:750854..752303+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4499 ID=mRNA_4499|Name=jgi.p|Nanoce1779_2|589330|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp|location=Sequence derived from alignment at scaffold_10:750854..752303+ (Nannochloropsis oceanica)
AGACACAGCATCACCATCAACACGCAGTGCATGAAAGCCTTTGCCTTGTC
GAGGAGCCTAGCAATATTTGGTACGTTCTTTAATGGAAAGAGGAAGGAGG
GTGGGCAACTTTAGGGGCCTAGGTGCATGATGGTTGGAGAGGGGCGTTGA
CGTGTCGACATGGACTAAACGTATGTCAATAATGCTAGTAGAGCTGGACA
AAAGAACGCGGTTGTGAAAGGCGATAGGGTTTCGTTGACGATTCAACCCA
CCTCGTGGCCTATCCCTCTTTGCAGAGAAGCCAAATAAATACAGGGTTCG
TGCTCATCGAGAACGCCCTCCCGTATGTCTTCCTTTGCTTGGCATCCTTT
CCCCTGTCAATTGCATGCGGGTATATGATTCTGACGCGCATCCTTTCAAA
ATCCTCTTCATAGTGGTGGGTGGGTCACCCTCGTTCGTCACATCATCGGC
TTTTGTGGGATCGGGCGCGCTTATCAGCTCCCTCAAGAAGGCTCGTCCAT
CTCCCCTCTGTCGACGGGTACGTCTCTGGGATAGCTCATCAAATTGACAT
TTCCCTCGTCCTAATCGTAAGCTACCATCCAATCACGCAGTTCAGCATGG
CCGCGGAAAGCGTGTACAACCTTACCGTCGACGATTTTTGTCTCAGACAG
TTCTCGCCTGAATACGGTGGCTCAAAAATCACCATGCCCCCTGCCGAGTT
CGAAGCGAGAGTAAATGCGTATTATCATGCTAATCCACACCTAGCGGATG
GCTACGCCCCATTTTGTAAGCATATTTTTATGCCCAATTTTGCGGGGTTG
ACGGCTGGTACGGCGCCCATCACGCCCGAAAATGAGCACTTGCTGCGTTC
TGTGTATGAGGCAAGGACAGAGCAAGAGCTGCCAGTGATGGTACGTGCAC
TAAAAACGTATTTATGCGTTTGCTTGTGGTTCAGCAACCCTTCGTCATGG
GTCCTCTTTCACTTGTCAGATGAACATGAATGTTGACTCTGTCATGCCCC
TCCCACCCCCCCTTCCTCCACCAGGTTCGATTCTTCCCGAAAGACCTCGT
GCCCCCCAGACGGGCGACGCACCTCGACATCATCCTCTACAGCCGAGAGC
AGATCCGAAAAGAGAACGCTGACATGGGTAACCCCGACATGGCCGCCTCT
CACGAAACCGCGCCGTGGGGCATCATTTCTGTGAAGGCTCAAGACGCGGA
CCATGAGTTGCCCATGCAGCCGATAACGATGCTGAGGAATGCCCTGGGCA
GGGAGTATGGCGGGTCGGGTGTGGAATTGGTCAGGGAGAAGTATTTGGAG
AGTGTGGACTTTTGGAGCCAAAATGCGATTATTCGATGAGAGGCGTGTGT
TTCGGAAGAGCAAAGTACACACCCAAGGAAGGAAGCAAGGTACCGTGTCG
CTGCAGGCAGTCACATGGTGTCACACAGAGAGAGACGGGACCACTGAATC

Coding sequence (CDS) from alignment at scaffold_10:750854..752303+

>mRNA_4499 ID=mRNA_4499|Name=jgi.p|Nanoce1779_2|589330|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_10:750854..752303+ (Nannochloropsis oceanica)
ATGGCCGCGGAAAGCGTGTACAACCTTACCGTCGACGATTTTTGTCTCAG
ACAGTTCTCGCCTGAATACGGTGGCTCAAAAATCACCATGCCCCCTGCCG
AGTTCGAAGCGAGAGTAAATGCGTATTATCATGCTAATCCACACCTAGCG
GATGGCTACGCCCCATTTTGTAAGCATATTTTTATGCCCAATTTTGCGGG
GTTGACGGCTGGTACGGCGCCCATCACGCCCGAAAATGAGCACTTGCTGC
GTTCTGTGTATGAGGCAAGGACAGAGCAAGAGCTGCCAGTGATGGTTCGA
TTCTTCCCGAAAGACCTCGTGCCCCCCAGACGGGCGACGCACCTCGACAT
CATCCTCTACAGCCGAGAGCAGATCCGAAAAGAGAACGCTGACATGGGTA
ACCCCGACATGGCCGCCTCTCACGAAACCGCGCCGTGGGGCATCATTTCT
GTGAAGGCTCAAGACGCGGACCATGAGTTGCCCATGCAGCCGATAACGAT
GCTGAGGAATGCCCTGGGCAGGGAGTATGGCGGGTCGGGTGTGGAATTGG
TCAGGGAGAAGTATTTGGAGAGTGTGGACTTTTGGAGCCAAAATGCGATT
ATTCGATGAATGGCCGCGGAAAGCGTGTACAACCTTACCGTCGACGATTT
TTGTCTCAGACAGTTCTCGCCTGAATACGGTGGCTCAAAAATCACCATGC
CCCCTGCCGAGTTCGAAGCGAGAGTAAATGCGTATTATCATGCTAATCCA
CACCTAGCGGATGGCTACGCCCCATTTTGTAAGCATATTTTTATGCCCAA
TTTTGCGGGGTTGACGGCTGGTACGGCGCCCATCACGCCCGAAAATGAGC
ACTTGCTGCGTTCTGTGTATGAGGCAAGGACAGAGCAAGAGCTGCCAGTG
ATGGTTCGATTCTTCCCGAAAGACCTCGTGCCCCCCAGACGGGCGACGCA
CCTCGACATCATCCTCTACAGCCGAGAGCAGATCCGAAAAGAGAACGCTG
ACATGGGTAACCCCGACATGGCCGCCTCTCACGAAACCGCGCCGTGGGGC
ATCATTTCTGTGAAGGCTCAAGACGCGGACCATGAGTTGCCCATGCAGCC
GATAACGATGCTGAGGAATGCCCTGGGCAGGGAGTATGGCGGGTCGGGTG
TGGAATTGGTCAGGGAGAAGTATTTGGAGAGTGTGGACTTTTGGAGCCAA
AATGCGATTATTCGATGA

Synonyms

Publications