jgi.p|Nanoce1779_2|589325, mRNA_4498 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589325
Unique NamemRNA_4498
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1699
Alignment locationscaffold_10:749087..750785 -

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Properties
Property NameValue
TranscriptId589411
TrackFilteredModels2
ProteinId589325
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:749087..750785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589325gene_4498Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589325mRNA_4498-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4498CDS_4498Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4498 ID=mRNA_4498|Name=jgi.p|Nanoce1779_2|589325|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp
TGAGGAATGACGCGCCATCTTCGGTTCCCCAAGACCGCCCTCTCTCAGCC
TCAGCGCGTGCCATGCACCTTCCCAGCCAATCCTCACACTCGCACCAGTC
CCCTTACAACGGTTCACAGGTGTTTGTCCTTGCGGCCTGCGGTTTGCACG
ACTTCCCGCCTGCTGCCTGTATTCCCCGGCCTAGGTCCTCCTTCCAGTCG
AGATCGTTTGAAGCCCACGGCCGCTCACAGCAGACGCGATGAAGGCCCTA
CCAATGGTCCAGGCGACTGTCACGGCATTTCTTGGTGCAACCTCGGGGGG
CAGACACTCAGCTCTCTGGGGCTTGTCACGGTTGGGGCAGCGACCACCAT
GCCGAGAAACGGCGTCTCCTTTTTTGGCCAGCGGCAGCAGCCTCTTTCAG
CGGCGGCGGTCGTTGTCGGTGCGAAACATGCATGAAGCCTTGACCGAGGT
CAGCCCTGAGTTAATGATACAGCTAGCGGGCTGCGCGGTCATGGTTGGTA
CCGGAAAAGTGTTGCAGGTCAAGGAGGAGAAGGAAGGCATCGAGCCGGCT
GCGCCTTGGGCGTTGAAGGAGGAGGGGCTGGAGAAAGCCGTTGATCTGTA
CCGGGACACAGCGGTGCGGTATTTTGGATACGCTAACGAAGTCGGGGAGG
CGTTCCGACCATTGGTCCCTGCTCCCCTTGTGACATTCTCCTACTTGGTA
GCCTTCGCCTATATTGCTGCTGATTCCTACTCACAGGGCGCGAAGGTGGT
GGATTTACCGTCGGGGGGGGAATGGAAAAAGCCGTCTATGCTGGCAAGTG
TTGACTCTTTGCTTTTTCAGATTATGGCTTCGGTTATTTTCCCGTCTTTC
ACCATTAATAGATGGGTGGTTTTTCTAGGGACGGCTCTCTCAGAGCTCCA
ACAGGATCAGTTTGCCAGCCTCCCACCCGAGCTGGTGCAATATCTGCCAA
CGGCTACCGGCCTGCTCATCATCCCTATAATTTGTGGACCTTTGGACGTG
CTCACGCACCGGCTACTGGATGGTTCGTTTCGGTGGGTGAGTGAGACCAT
CCTGGCTAAGGATCGGTAAATGAACTAAACTGAAGACGGATGGGTTGTGA
TTGCGACGGCAGGAGAGGAAAACTGGGGCGAGAACAAGTGCATTTGATTT
ACGACGTGCCCCCTCCTCTTTTCACTCCTTCCAGCAAGGAGAAGAACGGC
AATTTTGGTGCATTCTAAATCAAGTGTAATAAAAGAAGGGGGCCGCTCCG
TCCTTCCTTCCCCGGTTATTGAGATGTGTTGGCTCAAGAAGAATCAAAGC
CAAAGTAAAGATGGGTGAAATGAACAGTGACTGGGACTCCCCAACTGCGA
TCTTCGTTCCTGATCGAATTGCCCCCCCCACATGCTTTCTTGGGGCTTCC
TGGCCGCGAGACCAATCCCATGTATGCAACCTGACATCTGCCCATGTCAT
ACATTTCCCTCCCAAGCTTTCCTGTCCGGCCACCTAGTCACATTACAGGC
GGGAGGGAGCCGACGTGGAATGGTGGGCAAAGTAGGAAGATGCCTCGTCT
CGGAAAGTTTGCTGGATTTCAGTGCATCGGTGAGCATCGGAGTCCAGGGC
ACCGGAGTGCATCGGCATATATCATCATCATCATCATCATCATCACCATC
ATCGTCCCTGCCTCACACCCATCACAACCAACTCTGCCTCGCCCATGAC
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protein sequence of jgi.p|Nanoce1779_2|589325

>mRNA_4498-protein ID=mRNA_4498-protein|Name=jgi.p|Nanoce1779_2|589325|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MKALPMVQATVTAFLGATSGGRHSALWGLSRLGQRPPCRETASPFLASGS
SLFQRRRSLSVRNMHEALTEVSPELMIQLAGCAVMVGTGKVLQVKEEKEG
IEPAAPWALKEEGLEKAVDLYRDTAVRYFGYANEVGEAFRPLVPAPLVTF
SYLVAFAYIAADSYSQGAKVVDLPSGGEWKKPSMLASVDSLLFQIMASVI
FPSFTINRWVVFLGTALSELQQDQFASLPPELVQYLPTATGLLIIPIICG
PLDVLTHRLLDGSFRWVSETILAKDR*
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mRNA from alignment at scaffold_10:749087..750785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4498 ID=mRNA_4498|Name=jgi.p|Nanoce1779_2|589325|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp|location=Sequence derived from alignment at scaffold_10:749087..750785- (Nannochloropsis oceanica)
TGAGGAATGACGCGCCATCTTCGGTTCCCCAAGACCGCCCTCTCTCAGCC
TCAGCGCGTGCCATGCACCTTCCCAGCCAATCCTCACACTCGCACCAGTC
CCCTTACAACGGTTCACAGGTGTTTGTCCTTGCGGCCTGCGGTTTGCACG
ACTTCCCGCCTGCTGCCTGTATTCCCCGGCCTAGGTCCTCCTTCCAGTCG
AGATCGTTTGAAGCCCACGGCCGCTCACAGCAGACGCGATGAAGGCCCTA
CCAATGGTCCAGGCGACTGTCACGGCATTTCTTGGTGCAACCTCGGGGGG
CAGACACTCAGCTCTCTGGGGCTTGTCACGGTTGGGGCAGCGACCACCAT
GCCGAGAAACGGCGTCTCCTTTTTTGGCCAGCGGCAGCAGCCTCTTTCAG
CGGCGGCGGTCGTTGTCGGTGCGAAACATGCATGAAGCCTTGACCGAGGT
CAGCCCTGAGTTAATGATACAGCTAGCGGGCTGCGCGGTCATGGTTGGTA
CCGGAAAAGTGTTGCAGGTCAAGGAGGAGAAGGAAGGCATCGAGCCGGCT
GCGCCTTGGGCGTTGAAGGAGGAGGGGCTGGAGAAAGCCGTTGATCTGTA
CCGGGACACAGCGGTGCGGTATTTTGGATACGCTAACGAAGTCGGGGAGG
CGTTCCGACCATTGGTCCCTGCTCCCCTTGTGACATTCTCCTACTTGGTA
GCCTTCGCCTATATTGCTGCTGATTCCTACTCACAGGGCGCGAAGGTGGT
GGATTTACCGTCGGGGGGGGAATGGAAAAAGCCGTCTATGCTGGCAAGTG
TTGACTCTTTGCTTTTTCAGATTATGGCTTCGGTTATTTTCCCGTCTTTC
ACCATTAATAGATGGGTGGTTTTTCTAGGGACGGCTCTCTCAGAGCTCCA
ACAGGATCAGTTTGCCAGCCTCCCACCCGAGCTGGTGCAATATCTGCCAA
CGGCTACCGGCCTGCTCATCATCCCTATAATTTGTGGACCTTTGGACGTG
CTCACGCACCGGCTACTGGATGGTTCGTTTCGGTGGGTGAGTGAGACCAT
CCTGGCTAAGGATCGGTAAATGAACTAAACTGAAGACGGATGGGTTGTGA
TTGCGACGGCAGGAGAGGAAAACTGGGGCGAGAACAAGTGCATTTGATTT
ACGACGTGCCCCCTCCTCTTTTCACTCCTTCCAGCAAGGAGAAGAACGGC
AATTTTGGTGCATTCTAAATCAAGTGTAATAAAAGAAGGGGGCCGCTCCG
TCCTTCCTTCCCCGGTTATTGAGATGTGTTGGCTCAAGAAGAATCAAAGC
CAAAGTAAAGATGGGTGAAATGAACAGTGACTGGGACTCCCCAACTGCGA
TCTTCGTTCCTGATCGAATTGCCCCCCCCACATGCTTTCTTGGGGCTTCC
TGGCCGCGAGACCAATCCCATGTATGCAACCTGACATCTGCCCATGTCAT
ACATTTCCCTCCCAAGCTTTCCTGTCCGGCCACCTAGTCACATTACAGGC
GGGAGGGAGCCGACGTGGAATGGTGGGCAAAGTAGGAAGATGCCTCGTCT
CGGAAAGTTTGCTGGATTTCAGTGCATCGGTGAGCATCGGAGTCCAGGGC
ACCGGAGTGCATCGGCATATATCATCATCATCATCATCATCATCACCATC
ATCGTCCCTGCCTCACACCCATCACAACCAACTCTGCCTCGCCCATGAC
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Coding sequence (CDS) from alignment at scaffold_10:749087..750785-

>mRNA_4498 ID=mRNA_4498|Name=jgi.p|Nanoce1779_2|589325|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_10:749087..750785- (Nannochloropsis oceanica)
ATGAAGGCCCTACCAATGGTCCAGGCGACTGTCACGGCATTTCTTGGTGC
AACCTCGGGGGGCAGACACTCAGCTCTCTGGGGCTTGTCACGGTTGGGGC
AGCGACCACCATGCCGAGAAACGGCGTCTCCTTTTTTGGCCAGCGGCAGC
AGCCTCTTTCAGCGGCGGCGGTCGTTGTCGGTGCGAAACATGCATGAAGC
CTTGACCGAGGTCAGCCCTGAGTTAATGATACAGCTAGCGGGCTGCGCGG
TCATGGTTGGTACCGGAAAAGTGTTGCAGGTCAAGGAGGAGAAGGAAGGC
ATCGAGCCGGCTGCGCCTTGGGCGTTGAAGGAGGAGGGGCTGGAGAAAGC
CGTTGATCTGTACCGGGACACAGCGGTGCGGTATTTTGGATACGCTAACG
AAGTCGGGGAGGCGTTCCGACCATTGGTCCCTGCTCCCCTTGTGACATTC
TCCTACTTGGTAGCCTTCGCCTATATTGCTGCTGATTCCTACTCACAGGG
CGCGAAGGTGGTGGATTTACCGTCGGGGGGGGAATGGAAAAAGCCGTCTA
TGCTGGCAAGTGTTGACTCTTTGCTTTTTCAGATTATGGCTTCGGTTATT
TTCCCGTCTTTCACCATTAATAGATGGGTGGTTTTTCTAGGGACGGCTCT
CTCAGAGCTCCAACAGGATCAGTTTGCCAGCCTCCCACCCGAGCTGGTGC
AATATCTGCCAACGGCTACCGGCCTGCTCATCATCCCTATAATTTGTGGA
CCTTTGGACGTGCTCACGCACCGGCTACTGGATGGTTCGTTTCGGTGGGT
GAGTGAGACCATCCTGGCTAAGGATCGGTAA
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Synonyms
Publications