jgi.p|Nanoce1779_2|639216, mRNA_4496 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639216
Unique NamemRNA_4496
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length702
Alignment locationscaffold_10:746390..747237 -

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Properties
Property NameValue
TranscriptId639302
TrackFilteredModels2
ProteinId639216
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:746390..747237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639216gene_4496Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639216mRNA_4496-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4496CDS_4496Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4496 ID=mRNA_4496|Name=jgi.p|Nanoce1779_2|639216|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
ATGTCCGCGGCTTTCGCCATTTCCATCGTCATCGGATCTAACCGTGGCAT
CGGATTGGAGCTATGCAAGCAGTTACATGCACGAGGGGACTGTGTGGTGG
GGGTGTGTAGGAAAGCGTCAGACGAACTTAAAGGGCTCGGTCTTTGGAAA
GTAGTGGAGGGCGTGGATGTCACCAAGGATGAACAAGTGCGCTCGCTCGC
GACACTTGACTTGGGTGGTGGCGCGGTTGACTCCTTGTTTTTGAATGCGG
GGATCGGCGATGGGATTGAGGACAGCTTGGGCAATCTGGATTACGCACAG
ATCATGCGGTCTTTTGATGTGAATGCGTGTGGACCGCTGCGGTGTGTGCA
GACGCTCTTGCCGCGTCTGAAGAAGGGAAGCAAGGTTCTCCTTGTCACCT
CGAGGATGGGCTCTGTGGATGACAACACCTCGGGCGGGTCTTATGGATAT
CGAATGAGCAAGAGCGCCTTGAACATTGCGGGCAAGAGTCTTTCTTTGGA
CCTGCACCCAAAAGGCGTAAGCGTTCTTGTCCTTCACCCCGGATTTGTCA
AGACAGATATGACCAGGCCGTATTGGGGTGGAAGAGGCATTGTTTCCCCT
GCCGAAAGTGCAGAAGGGCTGATCAAACGTGCCGATGATCTGACGTTGCG
AACTTCTGGACAATTTCTGCACGCATTGACAGGGGAAGTGTTACCGTGGT
AG
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protein sequence of jgi.p|Nanoce1779_2|639216

>mRNA_4496-protein ID=mRNA_4496-protein|Name=jgi.p|Nanoce1779_2|639216|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MSAAFAISIVIGSNRGIGLELCKQLHARGDCVVGVCRKASDELKGLGLWK
VVEGVDVTKDEQVRSLATLDLGGGAVDSLFLNAGIGDGIEDSLGNLDYAQ
IMRSFDVNACGPLRCVQTLLPRLKKGSKVLLVTSRMGSVDDNTSGGSYGY
RMSKSALNIAGKSLSLDLHPKGVSVLVLHPGFVKTDMTRPYWGGRGIVSP
AESAEGLIKRADDLTLRTSGQFLHALTGEVLPW*
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mRNA from alignment at scaffold_10:746390..747237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4496 ID=mRNA_4496|Name=jgi.p|Nanoce1779_2|639216|organism=Nannochloropsis oceanica|type=mRNA|length=848bp|location=Sequence derived from alignment at scaffold_10:746390..747237- (Nannochloropsis oceanica)
ATGTCCGCGGCTTTCGCCATTTCCATCGTCATCGGATCTAACCGTGGCAT
CGGATTGGAGCTATGCAAGCAGTTACATGCACGAGGGGACTGTGTGGTGG
GGGTGTGTAGGAAAGCGTCAGACGAACTTAAAGGGCTCGGTCTTTGGAAA
GTAGTGGAGGGCGTGGATGTCACCAAGGATGAACAAGTGCGCTCGCTCGC
GACACTTGACTTGGGTGGTGGCGCGGTTGACTCCTTGTTTTTGAATGCGG
GGATCGGCGATGGGATTGAGGACAGCTTGGGCAATCTGGATTACGCACAG
ATCATGCGGTCTTTTGATGTGAATGCGTGTGGACCGCTGCGGTGTGTGCA
GACGCTCTTGCCGCGTCTGAAGAAGGGAAGCAAGGTAAGCGAGTCTGCGG
AGGAGGAGGAGACGGGGTGAGAACGTGAATGAGAAGAAGCGGGGGGGGAA
AGGCAAGTAAAATAAATGCATGCTTTCTTCACTCCCACTCACCACGAGTA
CTGGTTCACATCACACTCCTGTGAATTCAGGTTCTCCTTGTCACCTCGAG
GATGGGCTCTGTGGATGACAACACCTCGGGCGGGTCTTATGGATATCGAA
TGAGCAAGAGCGCCTTGAACATTGCGGGCAAGAGTCTTTCTTTGGACCTG
CACCCAAAAGGCGTAAGCGTTCTTGTCCTTCACCCCGGATTTGTCAAGAC
AGATATGACCAGGCCGTATTGGGGTGGAAGAGGCATTGTTTCCCCTGCCG
AAAGTGCAGAAGGGCTGATCAAACGTGCCGATGATCTGACGTTGCGAACT
TCTGGACAATTTCTGCACGCATTGACAGGGGAAGTGTTACCGTGGTAG
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Coding sequence (CDS) from alignment at scaffold_10:746390..747237-

>mRNA_4496 ID=mRNA_4496|Name=jgi.p|Nanoce1779_2|639216|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_10:746390..747237- (Nannochloropsis oceanica)
GTTCTCCTTGTCACCTCGAGGATGGGCTCTGTGGATGACAACACCTCGGG
CGGGTCTTATGGATATCGAATGAGCAAGAGCGCCTTGAACATTGCGGGCA
AGAGTCTTTCTTTGGACCTGCACCCAAAAGGCGTAAGCGTTCTTGTCCTT
CACCCCGGATTTGTCAAGACAGATATGACCAGGCCGTATTGGGGTGGAAG
AGGCATTGTTTCCCCTGCCGAAAGTGCAGAAGGGCTGATCAAACGTGCCG
ATGATCTGACGTTGCGAACTTCTGGACAATTTCTGCACGCATTGACAGGG
GAAGTGTTACCGTGGTAGATGTCCGCGGCTTTCGCCATTTCCATCGTCAT
CGGATCTAACCGTGGCATCGGATTGGAGCTATGCAAGCAGTTACATGCAC
GAGGGGACTGTGTGGTGGGGGTGTGTAGGAAAGCGTCAGACGAACTTAAA
GGGCTCGGTCTTTGGAAAGTAGTGGAGGGCGTGGATGTCACCAAGGATGA
ACAAGTGCGCTCGCTCGCGACACTTGACTTGGGTGGTGGCGCGGTTGACT
CCTTGTTTTTGAATGCGGGGATCGGCGATGGGATTGAGGACAGCTTGGGC
AATCTGGATTACGCACAGATCATGCGGTCTTTTGATGTGAATGCGTGTGG
ACCGCTGCGGTGTGTGCAGACGCTCTTGCCGCGTCTGAAGAAGGGAAGCA
AGGTTCTCCTTGTCACCTCGAGGATGGGCTCTGTGGATGACAACACCTCG
GGCGGGTCTTATGGATATCGAATGAGCAAGAGCGCCTTGAACATTGCGGG
CAAGAGTCTTTCTTTGGACCTGCACCCAAAAGGCGTAAGCGTTCTTGTCC
TTCACCCCGGATTTGTCAAGACAGATATGACCAGGCCGTATTGGGGTGGA
AGAGGCATTGTTTCCCCTGCCGAAAGTGCAGAAGGGCTGATCAAACGTGC
CGATGATCTGACGTTGCGAACTTCTGGACAATTTCTGCACGCATTGACAG
GGGAAGTGTTACCGTGGTAGATGTCCGCGGCTTTCGCCATTTCCATCGTC
ATCGGATCTAACCGTGGCATCGGATTGGAGCTATGCAAGCAGTTACATGC
ACGAGGGGACTGTGTGGTGGGGGTGTGTAGGAAAGCGTCAGACGAACTTA
AAGGGCTCGGTCTTTGGAAAGTAGTGGAGGGCGTGGATGTCACCAAGGAT
GAACAAGTGCGCTCGCTCGCGACACTTGACTTGGGTGGTGGCGCGGTTGA
CTCCTTGTTTTTGAATGCGGGGATCGGCGATGGGATTGAGGACAGCTTGG
GCAATCTGGATTACGCACAGATCATGCGGTCTTTTGATGTGAATGCGTGT
GGACCGCTGCGGTGTGTGCAGACGCTCTTGCCGCGTCTGAAGAAGGGAAG
CAAG
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Synonyms
Publications