jgi.p|Nanoce1779_2|589310, mRNA_4494 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589310
Unique NamemRNA_4494
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length856
Alignment locationscaffold_10:740219..741074 +

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Properties
Property NameValue
TranscriptId589396
TrackFilteredModels2
ProteinId589310
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:740219..741074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589310gene_4494Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589310mRNA_4494-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4494CDS_4494Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4494 ID=mRNA_4494|Name=jgi.p|Nanoce1779_2|589310|organism=Nannochloropsis oceanica|type=mRNA|length=856bp
CTGGGGGGGTGCCGGTGGAGAGTTGATATCGTCCATGCATACTCTCACAC
GAAAAAGCTAGTCATATGCTTGCAATTTACATATTCCGATGTCACCTCGT
CCACTCCCATGTCCAGACACATCGTTCAAACCTAAATTGAGACTACATCT
CGAATTTCGAAGCCAAATCTCTTGACTTGACTCGACATCTTTACTATAGT
GAAGTTGTGTAGTCACTTCATCATCAGCCATAATGTCGACATCCTCCCAG
ATCCAAGCGCAGCGGCAGCGTCTCGAAACCACTCCGAAGAAGCTGGGCCT
CTTTCAGTCTCTGCTCAAGCCCGGTTGGGATTCAGCGGAGATCGTCATCC
CCTTCTTGCACAAGTGCCTGGGCGCGCTCCTGGCCGTCCTCCTCTACACA
GCCCAGCACAACGACGGCCACGTGCGCATTCACCTGCTCGTCATGTCCGG
TTTGACCATGGGACTGTGGGGATCTGTCACATGGTTTGTGCGGGAGTACC
GAGCGGCCCTAGCCAAGGACAAGCTGGGCGGCAATGAAGCAGGGGAAGGA
GCCCCTTCCCCCTTGTCTGGCGAGCAGGAAAACGAGGTTGCTCCCGCCGC
AATCAAGAATAGTGTGAGGACGAGTAAATCGTTGCGGTATACGGATTGAG
TGTGACGGATTCGTTGATTGATGTACGGGAGATCAGACCTCTGCCCCGTA
CGGTAAGGGAGGGAGGATGTACACATGAATGTACACATGAATGACTGAAT
GAATCAAATGAGGTGCTCCGCACAAAGACAAATGAATGAAAATAAAAATG
AAAATGAAGAGGCAGTATTCAGCACACTAGATACAAAGCACAAGCTTAAG
TAGATG
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protein sequence of jgi.p|Nanoce1779_2|589310

>mRNA_4494-protein ID=mRNA_4494-protein|Name=jgi.p|Nanoce1779_2|589310|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSTSSQIQAQRQRLETTPKKLGLFQSLLKPGWDSAEIVIPFLHKCLGALL
AVLLYTAQHNDGHVRIHLLVMSGLTMGLWGSVTWFVREYRAALAKDKLGG
NEAGEGAPSPLSGEQENEVAPAAIKNSVRTSKSLRYTD*
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mRNA from alignment at scaffold_10:740219..741074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4494 ID=mRNA_4494|Name=jgi.p|Nanoce1779_2|589310|organism=Nannochloropsis oceanica|type=mRNA|length=856bp|location=Sequence derived from alignment at scaffold_10:740219..741074+ (Nannochloropsis oceanica)
CTGGGGGGGTGCCGGTGGAGAGTTGATATCGTCCATGCATACTCTCACAC
GAAAAAGCTAGTCATATGCTTGCAATTTACATATTCCGATGTCACCTCGT
CCACTCCCATGTCCAGACACATCGTTCAAACCTAAATTGAGACTACATCT
CGAATTTCGAAGCCAAATCTCTTGACTTGACTCGACATCTTTACTATAGT
GAAGTTGTGTAGTCACTTCATCATCAGCCATAATGTCGACATCCTCCCAG
ATCCAAGCGCAGCGGCAGCGTCTCGAAACCACTCCGAAGAAGCTGGGCCT
CTTTCAGTCTCTGCTCAAGCCCGGTTGGGATTCAGCGGAGATCGTCATCC
CCTTCTTGCACAAGTGCCTGGGCGCGCTCCTGGCCGTCCTCCTCTACACA
GCCCAGCACAACGACGGCCACGTGCGCATTCACCTGCTCGTCATGTCCGG
TTTGACCATGGGACTGTGGGGATCTGTCACATGGTTTGTGCGGGAGTACC
GAGCGGCCCTAGCCAAGGACAAGCTGGGCGGCAATGAAGCAGGGGAAGGA
GCCCCTTCCCCCTTGTCTGGCGAGCAGGAAAACGAGGTTGCTCCCGCCGC
AATCAAGAATAGTGTGAGGACGAGTAAATCGTTGCGGTATACGGATTGAG
TGTGACGGATTCGTTGATTGATGTACGGGAGATCAGACCTCTGCCCCGTA
CGGTAAGGGAGGGAGGATGTACACATGAATGTACACATGAATGACTGAAT
GAATCAAATGAGGTGCTCCGCACAAAGACAAATGAATGAAAATAAAAATG
AAAATGAAGAGGCAGTATTCAGCACACTAGATACAAAGCACAAGCTTAAG
TAGATG
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Coding sequence (CDS) from alignment at scaffold_10:740219..741074+

>mRNA_4494 ID=mRNA_4494|Name=jgi.p|Nanoce1779_2|589310|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_10:740219..741074+ (Nannochloropsis oceanica)
ATGTCGACATCCTCCCAGATCCAAGCGCAGCGGCAGCGTCTCGAAACCAC
TCCGAAGAAGCTGGGCCTCTTTCAGTCTCTGCTCAAGCCCGGTTGGGATT
CAGCGGAGATCGTCATCCCCTTCTTGCACAAGTGCCTGGGCGCGCTCCTG
GCCGTCCTCCTCTACACAGCCCAGCACAACGACGGCCACGTGCGCATTCA
CCTGCTCGTCATGTCCGGTTTGACCATGGGACTGTGGGGATCTGTCACAT
GGTTTGTGCGGGAGTACCGAGCGGCCCTAGCCAAGGACAAGCTGGGCGGC
AATGAAGCAGGGGAAGGAGCCCCTTCCCCCTTGTCTGGCGAGCAGGAAAA
CGAGGTTGCTCCCGCCGCAATCAAGAATAGTGTGAGGACGAGTAAATCGT
TGCGGTATACGGATTGA
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Synonyms
Publications