jgi.p|Nanoce1779_2|589307, mRNA_4493 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589307
Unique Name	mRNA_4493
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1883
Alignment location	scaffold_10:737838..740001 -

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Properties


Property Name	Value
TranscriptId	589393
Track	FilteredModels2
ProteinId	589307

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:737838..740001 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589307	gene_4493	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589307	mRNA_4493-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4493	CDS_4493	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:737838..740001-
coding sequence from alignment at scaffold_10:737838..740001-

mRNA sequence

>mRNA_4493 ID=mRNA_4493|Name=jgi.p|Nanoce1779_2|589307|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp
ACAGCTCCCCTCCACCACCACAACAACACACTTCCCACCACGAGGGTCTT
CTAGGACAGCCGGCAGTCATGTTTTTCAAGGACTTTGGGCGGTCCACGGC
AGACTTGTTCAATGACGATTTCAGCTACAAAAGAAAGCTTAAGATCAAGC
TTCCCACACCGGACGGCGTGACCTGGACGAGCGAAGGGGAGCTTTCTTCA
AAGGGAGTCATGGCGAAACTGGCCGCCAAGTACAAGCACCCTTCCGGCAT
CTCCCTGGACAAGTTGGAGTTTAAGACCGATGGCCGCATCCTGGGAGAGG
CCTCATTGGACGTTGACAGCAGGTTGAAGCTGTGGGTGAGCGCGGAGGAC
GGGCGACAGGATGTGGGAAAGCCCATCAAGTCGCATGGGAAATTGGGAGT
CGAGTACGTGAGCCCCGGCGTGTTGGTAGCACAGAGTGACGTGGACGTGG
TAAATGGTCCGACGGTGAATGGCTCGGCAGTCCTAAGCCTAGGGGGGGAA
AGCAGGGTGTTGGCGGGTTTCCAGGCCACGTATAACACGCAATTGGACGA
GAAAGATCAGAAGCCGGAATTCCTCGATTACAACGTGGGCTTGGCCAAGG
TCAACAAGAGCTGGGAGGCGTCGGTGCGGTCATTTAATAAGGTTTCCAAT
CTCCAATTTTCCCTTCTCTCCCGCGTGAACCCCCAAGTGACATTCGGGGC
GCAACTTGACTACCAGGTGGATAAAAACACCCAGGGCATGACGATTGGTG
GCTGCTTCCGCCCAGACGGCGACACGCGCCTGTCAGGAAAGATCTCCTCC
TTGGCCTTACTTTCGGTGGCGTACGCGCAGAATCTCAGCCCTTACGCGCA
CCTCTTGTTGTCGGCCGAGGTGGACGCCAAGGACTGGGCGTCTGATTCGC
ATAAGTTCGGACTGGGGCTCACGCTGAGTACATGAGAAAATGGAGGGAAA
ACAGAAGGAGGAGAAAGATTAAATGATCGATAGATAAAGTGAAATGGGGA
TGGAGAAAGGGAGGAAGAGAGGGGGACAGACAGGAAGAAAGAATTGGAGA
GAAAGGGACACGATACAGTAGCAGGAGCAGAGGACAAAGAGTTGGCCAGT
TCCCACCCGAAGATAGGCGTCTCTCTTGTCAAAAGACAAAGAGAAGGAGG
TTTTATTTTTCTCTATTCGAAAGGCGAAGTAAGGGAGGTTTAAGTGGTGG
TTTAAGTGCCCAGAAGTGGTGGAAAGAGATCATTCAATGACAGCGCAATA
TTGGTATTACTAGACCTACGCACAGTTATGATTTAAGGGGAAATATATGC
AAACCAAAACCTGTGATAGGTCTCTGTAGTACGACCGCCCCTGTCATTGT
TAGTGATTGTCCGTAGTCTGTCAAGGCATACACTTTAATTTCTCCGTTCT
TTTCTTCGAGTGGAGTTGATGCGGCCCACCCACCGACGTGCTGTGTAATC
TTTTTTGTCTGCCTCTTTCCACTGCCCGCCAACATTTGTGGCGATCCTCC
CCCTTTAACTTTGATGTCTAAAATTGAAAATATTACAACAAACTGTACAC
ATTGACGTTGACAAAAAGAGAACGAAGCGAGATGAGGAACGTGGTTGAAG
GTGCCTTGTGAATCCTCATCGCCCGATAGCTATGCGTGGGATGAATTTCC
AAGGCGGAGGAAATCTTCCGGATGAAGTGTAGAACATGCACGAGGAGGAG
GAAGGGGAAGAAAGCGACAGGCGCGAGCTCCCTAGCTCCCTAATCAGTGA
TTCCGCCCATGATCCCATGGCTGAAAATAGAAACGCTCCTCGAAGCCCTT
GATAATTAAACTCCCCGTTATCCCCAACACCGTTAAGAATCCCCCGGCTA
ACCGCGTGTACACACTCTGTCCCAGCAACCCCA

protein sequence of jgi.p|Nanoce1779_2|589307

>mRNA_4493-protein ID=mRNA_4493-protein|Name=jgi.p|Nanoce1779_2|589307|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MFFKDFGRSTADLFNDDFSYKRKLKIKLPTPDGVTWTSEGELSSKGVMAK
LAAKYKHPSGISLDKLEFKTDGRILGEASLDVDSRLKLWVSAEDGRQDVG
KPIKSHGKLGVEYVSPGVLVAQSDVDVVNGPTVNGSAVLSLGGESRVLAG
FQATYNTQLDEKDQKPEFLDYNVGLAKVNKSWEASVRSFNKVSNLQFSLL
SRVNPQVTFGAQLDYQVDKNTQGMTIGGCFRPDGDTRLSGKISSLALLSV
AYAQNLSPYAHLLLSAEVDAKDWASDSHKFGLGLTLST*

mRNA from alignment at scaffold_10:737838..740001-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4493 ID=mRNA_4493|Name=jgi.p|Nanoce1779_2|589307|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp|location=Sequence derived from alignment at scaffold_10:737838..740001- (Nannochloropsis oceanica)
ACAGCTCCCCTCCACCACCACAACAACACACTTCCCACCACGAGGGTCTT
CTAGGACAGCCGGCAGTCATGTTTTTCAAGGACTTTGGGCGGTCCACGGC
AGGTAGGCAGGACAGAAATGGGGGGCGGGAGGCTGTCCGAATGTCTTGGA
CCTGCACTCATTTTTCGCACACTCACACATCGTTCCCCCGAAAAAGACTT
GTTCAATGACGATTTCAGCTACAAAAGAAAGCTTAAGATCAAGCTTCCCA
CACCGGACGGCGTGGTAAGTGTGTTTCTGTAAAGGGAGAGTTGCTCCATC
CCCTCCTCCTGCTCATGCCTCCCGCCCCCCCTCTTTTTGTGCGTACGGCG
TACGGCAGTGTCTTTTGGTGACTCCTTGTCTCGAGATACTTTTGAGCGGA
CGCTGGCTTTCCTTATCTCTTCCTTCCTCCCACAAATTACCTTTTTCTCA
GACCTGGACGAGCGAAGGGGAGCTTTCTTCAAAGGGAGTCATGGCGAAAC
TGGCCGCCAAGTACAAGCACCCTTCCGGCATCTCCCTGGACAAGTTGGAG
TTTAAGACCGATGGCCGCATCCTGGGAGAGGCCTCATTGGACGTTGACAG
CAGGTTGAAGCTGTGGGTGAGCGCGGAGGACGGGCGACAGGATGTGGGAA
AGCCCATCAAGTCGCATGGGAAATTGGGAGTCGAGTACGTGAGCCCCGGC
GTGTTGGTAGCACAGAGTGACGTGGACGTGGTAAATGGTCCGACGGTGAA
TGGCTCGGCAGTCCTAAGCCTAGGGGGGGAAAGCAGGGTGTTGGCGGGTT
TCCAGGCCACGTATAACACGCAATTGGACGAGAAAGATCAGAAGCCGGAA
TTCCTCGATTACAACGTGGGCTTGGCCAAGGTCAACAAGAGCTGGGAGGC
GTCGGTGCGGTCATTTAATAAGGTTTCCAATCTCCAATTTTCCCTTCTCT
CCCGCGTGAACCCCCAAGTGACATTCGGGGCGCAACTTGACTACCAGGTG
GATAAAAACACCCAGGGCATGACGATTGGTGGCTGCTTCCGCCCAGACGG
CGACACGCGCCTGTCAGGAAAGATCTCCTCCTTGGCCTTACTTTCGGTGG
CGTACGCGCAGAATCTCAGCCCTTACGCGCACCTCTTGTTGTCGGCCGAG
GTGGACGCCAAGGACTGGGCGTCTGATTCGCATAAGTTCGGACTGGGGCT
CACGCTGAGTACATGAGAAAATGGAGGGAAAACAGAAGGAGGAGAAAGAT
TAAATGATCGATAGATAAAGTGAAATGGGGATGGAGAAAGGGAGGAAGAG
AGGGGGACAGACAGGAAGAAAGAATTGGAGAGAAAGGGACACGATACAGT
AGCAGGAGCAGAGGACAAAGAGTTGGCCAGTTCCCACCCGAAGATAGGCG
TCTCTCTTGTCAAAAGACAAAGAGAAGGAGGTTTTATTTTTCTCTATTCG
AAAGGCGAAGTAAGGGAGGTTTAAGTGGTGGTTTAAGTGCCCAGAAGTGG
TGGAAAGAGATCATTCAATGACAGCGCAATATTGGTATTACTAGACCTAC
GCACAGTTATGATTTAAGGGGAAATATATGCAAACCAAAACCTGTGATAG
GTCTCTGTAGTACGACCGCCCCTGTCATTGTTAGTGATTGTCCGTAGTCT
GTCAAGGCATACACTTTAATTTCTCCGTTCTTTTCTTCGAGTGGAGTTGA
TGCGGCCCACCCACCGACGTGCTGTGTAATCTTTTTTGTCTGCCTCTTTC
CACTGCCCGCCAACATTTGTGGCGATCCTCCCCCTTTAACTTTGATGTCT
AAAATTGAAAATATTACAACAAACTGTACACATTGACGTTGACAAAAAGA
GAACGAAGCGAGATGAGGAACGTGGTTGAAGGTGCCTTGTGAATCCTCAT
CGCCCGATAGCTATGCGTGGGATGAATTTCCAAGGCGGAGGAAATCTTCC
GGATGAAGTGTAGAACATGCACGAGGAGGAGGAAGGGGAAGAAAGCGACA
GGCGCGAGCTCCCTAGCTCCCTAATCAGTGATTCCGCCCATGATCCCATG
GCTGAAAATAGAAACGCTCCTCGAAGCCCTTGATAATTAAACTCCCCGTT
ATCCCCAACACCGTTAAGAATCCCCCGGCTAACCGCGTGTACACACTCTG
TCCCAGCAACCCCA

Coding sequence (CDS) from alignment at scaffold_10:737838..740001-

>mRNA_4493 ID=mRNA_4493|Name=jgi.p|Nanoce1779_2|589307|organism=Nannochloropsis oceanica|type=CDS|length=2601bp|location=Sequence derived from alignment at scaffold_10:737838..740001- (Nannochloropsis oceanica)
ACCTGGACGAGCGAAGGGGAGCTTTCTTCAAAGGGAGTCATGGCGAAACT
GGCCGCCAAGTACAAGCACCCTTCCGGCATCTCCCTGGACAAGTTGGAGT
TTAAGACCGATGGCCGCATCCTGGGAGAGGCCTCATTGGACGTTGACAGC
AGGTTGAAGCTGTGGGTGAGCGCGGAGGACGGGCGACAGGATGTGGGAAA
GCCCATCAAGTCGCATGGGAAATTGGGAGTCGAGTACGTGAGCCCCGGCG
TGTTGGTAGCACAGAGTGACGTGGACGTGGTAAATGGTCCGACGGTGAAT
GGCTCGGCAGTCCTAAGCCTAGGGGGGGAAAGCAGGGTGTTGGCGGGTTT
CCAGGCCACGTATAACACGCAATTGGACGAGAAAGATCAGAAGCCGGAAT
TCCTCGATTACAACGTGGGCTTGGCCAAGGTCAACAAGAGCTGGGAGGCG
TCGGTGCGGTCATTTAATAAGGTTTCCAATCTCCAATTTTCCCTTCTCTC
CCGCGTGAACCCCCAAGTGACATTCGGGGCGCAACTTGACTACCAGGTGG
ATAAAAACACCCAGGGCATGACGATTGGTGGCTGCTTCCGCCCAGACGGC
GACACGCGCCTGTCAGGAAAGATCTCCTCCTTGGCCTTACTTTCGGTGGC
GTACGCGCAGAATCTCAGCCCTTACGCGCACCTCTTGTTGTCGGCCGAGG
TGGACGCCAAGGACTGGGCGTCTGATTCGCATAAGTTCGGACTGGGGCTC
ACGCTGAGTACATGAACTTGTTCAATGACGATTTCAGCTACAAAAGAAAG
CTTAAGATCAAGCTTCCCACACCGGACGGCGTGATGTTTTTCAAGGACTT
TGGGCGGTCCACGGCAGACCTGGACGAGCGAAGGGGAGCTTTCTTCAAAG
GGAGTCATGGCGAAACTGGCCGCCAAGTACAAGCACCCTTCCGGCATCTC
CCTGGACAAGTTGGAGTTTAAGACCGATGGCCGCATCCTGGGAGAGGCCT
CATTGGACGTTGACAGCAGGTTGAAGCTGTGGGTGAGCGCGGAGGACGGG
CGACAGGATGTGGGAAAGCCCATCAAGTCGCATGGGAAATTGGGAGTCGA
GTACGTGAGCCCCGGCGTGTTGGTAGCACAGAGTGACGTGGACGTGGTAA
ATGGTCCGACGGTGAATGGCTCGGCAGTCCTAAGCCTAGGGGGGGAAAGC
AGGGTGTTGGCGGGTTTCCAGGCCACGTATAACACGCAATTGGACGAGAA
AGATCAGAAGCCGGAATTCCTCGATTACAACGTGGGCTTGGCCAAGGTCA
ACAAGAGCTGGGAGGCGTCGGTGCGGTCATTTAATAAGGTTTCCAATCTC
CAATTTTCCCTTCTCTCCCGCGTGAACCCCCAAGTGACATTCGGGGCGCA
ACTTGACTACCAGGTGGATAAAAACACCCAGGGCATGACGATTGGTGGCT
GCTTCCGCCCAGACGGCGACACGCGCCTGTCAGGAAAGATCTCCTCCTTG
GCCTTACTTTCGGTGGCGTACGCGCAGAATCTCAGCCCTTACGCGCACCT
CTTGTTGTCGGCCGAGGTGGACGCCAAGGACTGGGCGTCTGATTCGCATA
AGTTCGGACTGGGGCTCACGCTGAGTACATGAACTTGTTCAATGACGATT
TCAGCTACAAAAGAAAGCTTAAGATCAAGCTTCCCACACCGGACGGCGTG
ATGTTTTTCAAGGACTTTGGGCGGTCCACGGCAGACCTGGACGAGCGAAG
GGGAGCTTTCTTCAAAGGGAGTCATGGCGAAACTGGCCGCCAAGTACAAG
CACCCTTCCGGCATCTCCCTGGACAAGTTGGAGTTTAAGACCGATGGCCG
CATCCTGGGAGAGGCCTCATTGGACGTTGACAGCAGGTTGAAGCTGTGGG
TGAGCGCGGAGGACGGGCGACAGGATGTGGGAAAGCCCATCAAGTCGCAT
GGGAAATTGGGAGTCGAGTACGTGAGCCCCGGCGTGTTGGTAGCACAGAG
TGACGTGGACGTGGTAAATGGTCCGACGGTGAATGGCTCGGCAGTCCTAA
GCCTAGGGGGGGAAAGCAGGGTGTTGGCGGGTTTCCAGGCCACGTATAAC
ACGCAATTGGACGAGAAAGATCAGAAGCCGGAATTCCTCGATTACAACGT
GGGCTTGGCCAAGGTCAACAAGAGCTGGGAGGCGTCGGTGCGGTCATTTA
ATAAGGTTTCCAATCTCCAATTTTCCCTTCTCTCCCGCGTGAACCCCCAA
GTGACATTCGGGGCGCAACTTGACTACCAGGTGGATAAAAACACCCAGGG
CATGACGATTGGTGGCTGCTTCCGCCCAGACGGCGACACGCGCCTGTCAG
GAAAGATCTCCTCCTTGGCCTTACTTTCGGTGGCGTACGCGCAGAATCTC
AGCCCTTACGCGCACCTCTTGTTGTCGGCCGAGGTGGACGCCAAGGACTG
GGCGTCTGATTCGCATAAGTTCGGACTGGGGCTCACGCTGAGTACATGAA
CTTGTTCAATGACGATTTCAGCTACAAAAGAAAGCTTAAGATCAAGCTTC
CCACACCGGACGGCGTGATGTTTTTCAAGGACTTTGGGCGGTCCACGGCA
G

Synonyms

Publications