jgi.p|Nanoce1779_2|555321, mRNA_4492 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|555321
Unique Name	mRNA_4492
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1869
Alignment location	scaffold_10:735714..737977 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	555407
Track	FilteredModels2
ProteinId	555321

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:735714..737977 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555321	gene_4492	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555321	mRNA_4492-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4492	CDS_4492	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:735714..737977+
coding sequence from alignment at scaffold_10:735714..737977+

mRNA sequence

>mRNA_4492 ID=mRNA_4492|Name=jgi.p|Nanoce1779_2|555321|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp
CATGTTTTGTTGTGGGGGCGTATTTCATCTAAAATCGCTAAAACAAACTC
CCTTGTACTCCCTCGACCTCCGAGCTTTCACATCCCCATCCCACAGCACA
CCAGCACCGGAAGCACAGGCTGCAAGACAAATTTGGCAAAGCGATTGGGC
CCTTTACACTACTGTGTCGTGCCTGGTGGCCCTCTTTTGCCCTTTGCCGC
CCGCCATCATCAAGACCCCATCGCCGGAAGCTCAAGGATGACTCTGCTGA
TGTCAATTCCCCTCCTCATGGTCTTGGGCCTAGTGCTGCCGTACACCTCG
CAGGCGTTTGTGGGGGGACAGTTGCCAAAATCTTTATTTCCGAAACAACA
GAGTCGCCGGGCTAGCACCGCTGGGACTTCGAACTTAGTGTCAGCCACGA
CACCAACATCGTCTTCCGTAGCCTTCACGGGCAGCAGCAGCAATGACGAT
GTCCATGAAGCATTTGACTGGTGGAAACAATGGTACCCCGTGGCCCTGAC
TCGGGATTTAGACAGTGCGGTGCCAACCAAAGTGACGTTGCTGGGTCGCG
ACTTGGTGCTATGGAAAGAGGGTGCGGTCGCCGCAGCAGCCAGCGGTAAT
CCTCCTGCCTGGCGATGCTTCATCGATCGATGCCCCCATCGCATGGCCCC
GCTGTCCGAAGGCCGGGTAGACAGCAAGACGGGTCATTTGCAATGCGCGT
ACCACGGCTGGGAATTCGGCGGCTCGGGGGCGTGTAGCAAAATTCCGCAG
GCGGACCCAGACGCCGACCAAAGTGAGGCCACCGCTAGGCGTTCGAGACG
CGCGTGTGCCACGGCCCTGCCCTCGCAAGAGGCTCAAGGCATGATTTGGG
TGTGGCCAGACACCTCGGACAAGGGCCTGGCGGCTTCAAAGGTAGTAAAG
CCGACGCTGATGGAGGACGTAGACGAGAAAGCAATGTCGTATTTGGTGGT
TTGTCGAGATATGCCGTATGGCTTCGAAACCCTGCTCGAAAACGGCATCG
ACCCCTCCCATCTCCCCTTCGCCCACCACAATATCATCAGCAATCGTAAT
CAGGCCGCCTTTATTGACATAAAGGAATCAGCAACAGCAGCAGCACACGG
AGACCCGGGAGGACACCGACGCAAACGGACCCTCCCCCCCATGGTGAAAG
TCGCCCAGTCCCTCCACTTCCGGCCCCCCACCCTTCTTTATCAAGTCATT
AACGTCACGGAGATTCTCAACAAATTACCCCTTCTCCCCAAGCGCGAACG
ACTCATCCGCATAGTCACATATGCCGTGCCCACTGGCCCCGGCCGGTCTC
GGGTCATCTACCGCTTCCTCCGCAACTACTTCCTCCCTCCCTTGGCCTGG
CTCCGATGGCCTCCCGAGTGGATTGAGCACCAACGCATTCTTCGCGTGCT
CGACAGCGACACTGTCTTCCTTCACGGACAAGAACGGGAGCGGGCATTGC
TCGACCCAAGCACTGTCCAAGACGTCGATAAGACTTATTACATGCCCACC
GCTGCTGATGGTTCCGTGCGCGCCCTCCGGAAATGGCTCGCGCGCTTTGG
CACGCCGAAGTGGCTTATATCTGGTTTACCGTCGTCGCTTCCGCAGACCC
CGGATCGACGCACACTTTTGGATAGATATGCCTCACACACGGCGCATTGT
AAAGTGTGCAGGGGGGCGTTACGGAATTTGGGGAGGTTGAGGCATGGGAT
AGGGTTCATGTCGGTGATGGCTTTTTATCTGGGGTTGCTGGGACAGAGTG
TGTACACGCGGTTAGCCGGGGGATTCTTAACGGTGTTGGGGATAACGGGG
AGTTTAATTATCAAGGGCTTCGAGGAGCGTTTCTATTTTCAGCCATGGGA
TCATGGGCGGAATCACTGA

protein sequence of jgi.p|Nanoce1779_2|555321

>mRNA_4492-protein ID=mRNA_4492-protein|Name=jgi.p|Nanoce1779_2|555321|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MTLLMSIPLLMVLGLVLPYTSQAFVGGQLPKSLFPKQQSRRASTAGTSNL
VSATTPTSSSVAFTGSSSNDDVHEAFDWWKQWYPVALTRDLDSAVPTKVT
LLGRDLVLWKEGAVAAAASGNPPAWRCFIDRCPHRMAPLSEGRVDSKTGH
LQCAYHGWEFGGSGACSKIPQADPDADQSEATARRSRRACATALPSQEAQ
GMIWVWPDTSDKGLAASKVVKPTLMEDVDEKAMSYLVVCRDMPYGFETLL
ENGIDPSHLPFAHHNIISNRNQAAFIDIKESATAAAHGDPGGHRRKRTLP
PMVKVAQSLHFRPPTLLYQVINVTEILNKLPLLPKRERLIRIVTYAVPTG
PGRSRVIYRFLRNYFLPPLAWLRWPPEWIEHQRILRVLDSDTVFLHGQER
ERALLDPSTVQDVDKTYYMPTAADGSVRALRKWLARFGTPKWLISGLPSS
LPQTPDRRTLLDRYASHTAHCKVCRGALRNLGRLRHGIGFMSVMAFYLGL
LGQSVYTRLAGGFLTVLGITGSLIIKGFEERFYFQPWDHGRNH*

mRNA from alignment at scaffold_10:735714..737977+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4492 ID=mRNA_4492|Name=jgi.p|Nanoce1779_2|555321|organism=Nannochloropsis oceanica|type=mRNA|length=2264bp|location=Sequence derived from alignment at scaffold_10:735714..737977+ (Nannochloropsis oceanica)
CATGTTTTGTTGTGGGGGCGTATTTCATCTAAAATCGCTAAAACAAACTC
CCTTGTACTCCCTCGACCTCCGAGCTTTCACATCCCCATCCCACAGCACA
CCAGCACCGGAAGCACAGGCTGCAAGACAAATTTGGCAAAGCGATTGGGC
CCTTTACACTACTGTGTCGTGCCTGGTGGCCCTCTTTTGCCCTTTGCCGC
CCGCCATCATCAAGACCCCATCGCCGGAAGCTCAAGGATGACTCTGCTGA
TGTCAATTCCCCTCCTCATGGTCTTGGGCCTAGTGCTGCCGTACACCTCG
CAGGCGTTTGTGGGGGGACAGTTGCCAAAATCTTTATTTCCGAAACAACA
GAGTCGCCGGGCTAGCACCGCTGGGACTTCGAACTTAGTGTCAGCCACGA
CACCAACATCGTCTTCCGTAGCCTTCACGGGCAGCAGCAGCAATGACGAT
GTCCATGAAGCATTTGACTGGTGGAAACAATGGTACCCCGTGGCCCTGAC
TCGGGATTTAGACAGTGCGGTGCCAACCAAAGTGACGTTGCTGGGTCGCG
ACTTGGTGCTATGGAAAGAGGGTGCGGTCGCCGCAGCAGCCAGCGGTAAT
CCTCCTGCCTGGCGATGCTTCATCGATCGATGCCCCCATCGCATGGCCCC
GCTGTCCGAAGGCCGGGTAGACAGCAAGACGGGTCATTTGCAATGCGCGT
ACCACGGCTGGGAATTCGGCGGCTCGGGGGCGTGTAGCAAAATTCCGCAG
GCGGACCCAGACGCCGACCAAAGTGAGGCCACCGCTAGGCGTTCGAGACG
CGCGTGTGCCACGGCCCTGCCCTCGCAAGAGGCTCAAGGCATGATTTGGG
TGTGGCCAGACACCTCGGACAAGGGCCTGGCGGCTTCAAAGGTAGTAAAG
CCGACGCTGATGGAGGACGTAGACGAGAAAGCAATGTCGTATTTGGTGGT
TTGTCGAGATATGCCGGTACGTCATTTGTATACATTCATGGGTGGGTGCG
AAGAAGAGGAGGTGTGGAGGACGGACACGTTGAGTGATGTCCCGTTTCGT
CTGTGGGCCACGACAAATCCCTCAATGCATGCCCGCGGCGTCCACTTTTC
TCCATCCCTTATTCCCATGGCACCCGATCCCCCAAACAGTATGGCTTCGA
AACCCTGCTCGAAAACGGCATCGACCCCTCCCATCTCCCCTTCGCCCACC
ACAATATCATCAGCAATCGTAATCAGGCCGCCTTTATTGACATAAAGGTA
GACGAGATCCGGAATGACGGCTTTGATTCCGCTCAATTCTTTCCCAAGCG
CCGCCGCATGCTCCCCTCGGTAGCAGAAGCTGCACCAGCAGGTGGAGGAG
GATCGGCACGACAACAACGCCAAGAGCCAAAGACTGTCGAGCACGGAAGC
GGGAACCTGGATCAGCACCGTATAGGCTCTTTGGTAGATGATGCACACGA
CGATGACAACAACAAGGAGGAATCAGCAACAGCAGCAGCACACGGAGACC
CGGGAGGACACCGACGCAAACGGACCCTCCCCCCCATGGTGAAAGTCGCC
CAGTCCCTCCACTTCCGGCCCCCCACCCTTCTTTATCAAGTCATTAACGT
CACGGAGATTCTCAACAAATTACCCCTTCTCCCCAAGCGCGAACGACTCA
TCCGCATAGTCACATATGCCGTGCCCACTGGCCCCGGCCGGTCTCGGGTC
ATCTACCGCTTCCTCCGCAACTACTTCCTCCCTCCCTTGGCCTGGCTCCG
ATGGCCTCCCGAGTGGATTGAGCACCAACGCATTCTTCGCGTGCTCGACA
GCGACACTGTCTTCCTTCACGGACAAGAACGGGAGCGGGCATTGCTCGAC
CCAAGCACTGTCCAAGACGTCGATAAGACTTATTACATGCCCACCGCTGC
TGATGGTTCCGTGCGCGCCCTCCGGAAATGGCTCGCGCGCTTTGGCACGC
CGAAGTGGCTTATATCTGGTTTACCGTCGTCGCTTCCGCAGACCCCGGAT
CGACGCACACTTTTGGATAGATATGCCTCACACACGGCGCATTGTAAAGT
GTGCAGGGGGGCGTTACGGAATTTGGGGAGGTTGAGGCATGGGATAGGGT
TCATGTCGGTGATGGCTTTTTATCTGGGGTTGCTGGGACAGAGTGTGTAC
ACGCGGTTAGCCGGGGGATTCTTAACGGTGTTGGGGATAACGGGGAGTTT
AATTATCAAGGGCTTCGAGGAGCGTTTCTATTTTCAGCCATGGGATCATG
GGCGGAATCACTGA

Coding sequence (CDS) from alignment at scaffold_10:735714..737977+

>mRNA_4492 ID=mRNA_4492|Name=jgi.p|Nanoce1779_2|555321|organism=Nannochloropsis oceanica|type=CDS|length=4896bp|location=Sequence derived from alignment at scaffold_10:735714..737977+ (Nannochloropsis oceanica)
ATGACTCTGCTGATGTCAATTCCCCTCCTCATGGTCTTGGGCCTAGTGCT
GCCGTACACCTCGCAGGCGTTTGTGGGGGGACAGTTGCCAAAATCTTTAT
TTCCGAAACAACAGAGTCGCCGGGCTAGCACCGCTGGGACTTCGAACTTA
GTGTCAGCCACGACACCAACATCGTCTTCCGTAGCCTTCACGGGCAGCAG
CAGCAATGACGATGTCCATGAAGCATTTGACTGGTGGAAACAATGGTACC
CCGTGGCCCTGACTCGGGATTTAGACAGTGCGGTGCCAACCAAAGTGACG
TTGCTGGGTCGCGACTTGGTGCTATGGAAAGAGGGTGCGGTCGCCGCAGC
AGCCAGCGGTAATCCTCCTGCCTGGCGATGCTTCATCGATCGATGCCCCC
ATCGCATGGCCCCGCTGTCCGAAGGCCGGGTAGACAGCAAGACGGGTCAT
TTGCAATGCGCGTACCACGGCTGGGAATTCGGCGGCTCGGGGGCGTGTAG
CAAAATTCCGCAGGCGGACCCAGACGCCGACCAAAGTGAGGCCACCGCTA
GGCGTTCGAGACGCGCGTGTGCCACGGCCCTGCCCTCGCAAGAGGCTCAA
GGCATGATTTGGGTGTGGCCAGACACCTCGGACAAGGGCCTGGCGGCTTC
AAAGGTAGTAAAGCCGACGCTGATGGAGGACGTAGACGAGAAAGCAATGT
CGTATTTGGTGGTTTGTCGAGATATGCCGTATGGCTTCGAAACCCTGCTC
GAAAACGGCATCGACCCCTCCCATCTCCCCTTCGCCCACCACAATATCAT
CAGCAATCGTAATCAGGCCGCCTTTATTGACATAAAGGAATCAGCAACAG
CAGCAGCACACGGAGACCCGGGAGGACACCGACGCAAACGGACCCTCCCC
CCCATGGTGAAAGTCGCCCAGTCCCTCCACTTCCGGCCCCCCACCCTTCT
TTATCAAGTCATTAACGTCACGGAGATTCTCAACAAATTACCCCTTCTCC
CCAAGCGCGAACGACTCATCCGCATAGTCACATATGCCGTGCCCACTGGC
CCCGGCCGGTCTCGGGTCATCTACCGCTTCCTCCGCAACTACTTCCTCCC
TCCCTTGGCCTGGCTCCGATGGCCTCCCGAGTGGATTGAGCACCAACGCA
TTCTTCGCGTGCTCGACAGCGACACTGTCTTCCTTCACGGACAAGAACGG
GAGCGGGCATTGCTCGACCCAAGCACTGTCCAAGACGTCGATAAGACTTA
TTACATGCCCACCGCTGCTGATGGTTCCGTGCGCGCCCTCCGGAAATGGC
TCGCGCGCTTTGGCACGCCGAAGTGGCTTATATCTGGTTTACCGTCGTCG
CTTCCGCAGACCCCGGATCGACGCACACTTTTGGATAGATATGCCTCACA
CACGGCGCATTGTAAAGTGTGCAGGGGGGCGTTACGGAATTTGGGGAGGT
TGAGGCATGGGATAGGGTTCATGTCGGTGATGGCTTTTTATCTGGGGTTG
CTGGGACAGAGTGTGTACACGCGGTTAGCCGGGGGATTCTTAACGGTGTT
GGGGATAACGGGGAGTTTAATTATCAAGGGCTTCGAGGAGCGTTTCTATT
TTCAGCCATGGGATCATGGGCGGAATCACTGAATGACTCTGCTGATGTCA
ATTCCCCTCCTCATGGTCTTGGGCCTAGTGCTGCCGTACACCTCGCAGGC
GTTTGTGGGGGGACAGTTGCCAAAATCTTTATTTCCGAAACAACAGAGTC
GCCGGGCTAGCACCGCTGGGACTTCGAACTTAGTGTCAGCCACGACACCA
ACATCGTCTTCCGTAGCCTTCACGGGCAGCAGCAGCAATGACGATGTCCA
TGAAGCATTTGACTGGTGGAAACAATGGTACCCCGTGGCCCTGACTCGGG
ATTTAGACAGTGCGGTGCCAACCAAAGTGACGTTGCTGGGTCGCGACTTG
GTGCTATGGAAAGAGGGTGCGGTCGCCGCAGCAGCCAGCGGTAATCCTCC
TGCCTGGCGATGCTTCATCGATCGATGCCCCCATCGCATGGCCCCGCTGT
CCGAAGGCCGGGTAGACAGCAAGACGGGTCATTTGCAATGCGCGTACCAC
GGCTGGGAATTCGGCGGCTCGGGGGCGTGTAGCAAAATTCCGCAGGCGGA
CCCAGACGCCGACCAAAGTGAGGCCACCGCTAGGCGTTCGAGACGCGCGT
GTGCCACGGCCCTGCCCTCGCAAGAGGCTCAAGGCATGATTTGGGTGTGG
CCAGACACCTCGGACAAGGGCCTGGCGGCTTCAAAGGTAGTAAAGCCGAC
GCTGATGGAGGACGTAGACGAGAAAGCAATGTCGTATTTGGTGGTTTGTC
GAGATATGCCGTATGGCTTCGAAACCCTGCTCGAAAACGGCATCGACCCC
TCCCATCTCCCCTTCGCCCACCACAATATCATCAGCAATCGTAATCAGGC
CGCCTTTATTGACATAAAGGAATCAGCAACAGCAGCAGCACACGGAGACC
CGGGAGGACACCGACGCAAACGGACCCTCCCCCCCATGGTGAAAGTCGCC
CAGTCCCTCCACTTCCGGCCCCCCACCCTTCTTTATCAAGTCATTAACGT
CACGGAGATTCTCAACAAATTACCCCTTCTCCCCAAGCGCGAACGACTCA
TCCGCATAGTCACATATGCCGTGCCCACTGGCCCCGGCCGGTCTCGGGTC
ATCTACCGCTTCCTCCGCAACTACTTCCTCCCTCCCTTGGCCTGGCTCCG
ATGGCCTCCCGAGTGGATTGAGCACCAACGCATTCTTCGCGTGCTCGACA
GCGACACTGTCTTCCTTCACGGACAAGAACGGGAGCGGGCATTGCTCGAC
CCAAGCACTGTCCAAGACGTCGATAAGACTTATTACATGCCCACCGCTGC
TGATGGTTCCGTGCGCGCCCTCCGGAAATGGCTCGCGCGCTTTGGCACGC
CGAAGTGGCTTATATCTGGTTTACCGTCGTCGCTTCCGCAGACCCCGGAT
CGACGCACACTTTTGGATAGATATGCCTCACACACGGCGCATTGTAAAGT
GTGCAGGGGGGCGTTACGGAATTTGGGGAGGTTGAGGCATGGGATAGGGT
TCATGTCGGTGATGGCTTTTTATCTGGGGTTGCTGGGACAGAGTGTGTAC
ACGCGGTTAGCCGGGGGATTCTTAACGGTGTTGGGGATAACGGGGAGTTT
AATTATCAAGGGCTTCGAGGAGCGTTTCTATTTTCAGCCATGGGATCATG
GGCGGAATCACTGAATGACTCTGCTGATGTCAATTCCCCTCCTCATGGTC
TTGGGCCTAGTGCTGCCGTACACCTCGCAGGCGTTTGTGGGGGGACAGTT
GCCAAAATCTTTATTTCCGAAACAACAGAGTCGCCGGGCTAGCACCGCTG
GGACTTCGAACTTAGTGTCAGCCACGACACCAACATCGTCTTCCGTAGCC
TTCACGGGCAGCAGCAGCAATGACGATGTCCATGAAGCATTTGACTGGTG
GAAACAATGGTACCCCGTGGCCCTGACTCGGGATTTAGACAGTGCGGTGC
CAACCAAAGTGACGTTGCTGGGTCGCGACTTGGTGCTATGGAAAGAGGGT
GCGGTCGCCGCAGCAGCCAGCGGTAATCCTCCTGCCTGGCGATGCTTCAT
CGATCGATGCCCCCATCGCATGGCCCCGCTGTCCGAAGGCCGGGTAGACA
GCAAGACGGGTCATTTGCAATGCGCGTACCACGGCTGGGAATTCGGCGGC
TCGGGGGCGTGTAGCAAAATTCCGCAGGCGGACCCAGACGCCGACCAAAG
TGAGGCCACCGCTAGGCGTTCGAGACGCGCGTGTGCCACGGCCCTGCCCT
CGCAAGAGGCTCAAGGCATGATTTGGGTGTGGCCAGACACCTCGGACAAG
GGCCTGGCGGCTTCAAAGGTAGTAAAGCCGACGCTGATGGAGGACGTAGA
CGAGAAAGCAATGTCGTATTTGGTGGTTTGTCGAGATATGCCGTATGGCT
TCGAAACCCTGCTCGAAAACGGCATCGACCCCTCCCATCTCCCCTTCGCC
CACCACAATATCATCAGCAATCGTAATCAGGCCGCCTTTATTGACATAAA
GGAATCAGCAACAGCAGCAGCACACGGAGACCCGGGAGGACACCGACGCA
AACGGACCCTCCCCCCCATGGTGAAAGTCGCCCAGTCCCTCCACTTCCGG
CCCCCCACCCTTCTTTATCAAGTCATTAACGTCACGGAGATTCTCAACAA
ATTACCCCTTCTCCCCAAGCGCGAACGACTCATCCGCATAGTCACATATG
CCGTGCCCACTGGCCCCGGCCGGTCTCGGGTCATCTACCGCTTCCTCCGC
AACTACTTCCTCCCTCCCTTGGCCTGGCTCCGATGGCCTCCCGAGTGGAT
TGAGCACCAACGCATTCTTCGCGTGCTCGACAGCGACACTGTCTTCCTTC
ACGGACAAGAACGGGAGCGGGCATTGCTCGACCCAAGCACTGTCCAAGAC
GTCGATAAGACTTATTACATGCCCACCGCTGCTGATGGTTCCGTGCGCGC
CCTCCGGAAATGGCTCGCGCGCTTTGGCACGCCGAAGTGGCTTATATCTG
GTTTACCGTCGTCGCTTCCGCAGACCCCGGATCGACGCACACTTTTGGAT
AGATATGCCTCACACACGGCGCATTGTAAAGTGTGCAGGGGGGCGTTACG
GAATTTGGGGAGGTTGAGGCATGGGATAGGGTTCATGTCGGTGATGGCTT
TTTATCTGGGGTTGCTGGGACAGAGTGTGTACACGCGGTTAGCCGGGGGA
TTCTTAACGGTGTTGGGGATAACGGGGAGTTTAATTATCAAGGGCTTCGA
GGAGCGTTTCTATTTTCAGCCATGGGATCATGGGCGGAATCACTGA

Synonyms

Publications