Properties
| Property Name | Value |
|---|
| TranscriptId | 589368 |
| Track | FilteredModels2 |
| ProteinId | 589282 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:721727..723089 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4487 ID=mRNA_4487|Name=jgi.p|Nanoce1779_2|589282|organism=Nannochloropsis oceanica|type=mRNA|length=800bp
CAGGGTTTCTTGCTTCCTGAGGAGAGCGTCAATTGTTGTTCGAGTCAGTC
ATGGTGCAATCGCGGCTCCGTCAGTACCAGGTAGTGGGACGGCACGTGCC
CACTGAGGCTCACCCCAACCCCACGGTGTTTCGGATGAAGATCTTTGCGC
CAAACGAAGTAGTGGCCAAGTCCCGCTTCTGGTACTTTCTGCACCAGATG
CACAAAATGAAGAAGACCACGGGCGAGATTCTGGACGTCAACGAGCTTGT
TGAACGCAACGCCCGCATCGTCAAGAATTACGCCATCTGGCTCAAATATG
ACTCCCGCTCCGGCACCCACAACATGTACCGCGAGTATCGTGACTTGACT
CTCACTGGCGCCGTTGACCAGCTCTACTCGGAGATGGCGGGTCGCCACCG
TGCTCGGTTCCGCTCTATCCAGATCATTCGCACGGGGGTCGTGACCGCCA
AAGACGCCAAGCGCACACACACTATGCAGTACCATAATTCAAAGATTAAG
TTTCCGTTGCCCCACCGCATCCAGCGACCGCCCACCAAGAGCCTGCGTGG
CGTCTACAAGGCCGTTCGACCCAACACCTACTTCCACTAGATCTCCACGT
CTCCCTCTCCCTCTTTCCGCCTTTCCGGTCGGGAGCATATAATAGGATGG
AATGGATGCGGCAGCAGCAATGCGAGGTAATGGACGGGTTACAGGGTGTG
AGCGATGCGGGGGCCTGGCATGGCATGGGAGGGAGGGAGGGAATGGTGCC
GTTTAGACGGGCACTTTAACGGTAGTAACAAAGAAAAAACCAAAACCGAG back to topprotein sequence of jgi.p|Nanoce1779_2|589282 >mRNA_4487-protein ID=mRNA_4487-protein|Name=jgi.p|Nanoce1779_2|589282|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MVQSRLRQYQVVGRHVPTEAHPNPTVFRMKIFAPNEVVAKSRFWYFLHQM
HKMKKTTGEILDVNELVERNARIVKNYAIWLKYDSRSGTHNMYREYRDLT
LTGAVDQLYSEMAGRHRARFRSIQIIRTGVVTAKDAKRTHTMQYHNSKIK
FPLPHRIQRPPTKSLRGVYKAVRPNTYFH* back to topmRNA from alignment at scaffold_10:721727..723089+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4487 ID=mRNA_4487|Name=jgi.p|Nanoce1779_2|589282|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp|location=Sequence derived from alignment at scaffold_10:721727..723089+ (Nannochloropsis oceanica)
CAGGGTTTCTTGCTTCCTGAGGAGAGCGTCAATTGTTGTTCGAGTCAGTC
ATGGTGGTAAGTCGCGGGGGTCTACTCGATGGAGGGAGGAGAAGAGAATG
AGGGGTGGATTGGGATGATCATGGTTTGCTTTGTGGGGGCAACGATGCCT
CTTACGGTCTTGCAGCCCTGCTTCTTGTTGTTTAGGGTTATTGATAATGG
TATGCTGTTGCTATGGTGAGGTATGGGTGTTGCGGATTGACCTACCAAGC
CTGGCCCCCTCGCTTCGTCCATCCACTGCATCATCTGCCCTTCGAAAAGT
CATTTCATGTCCCTGTGCATGTCCGCACCCTCTGTTTCCATGTTCTGAGC
ACCTTTCCCCCTTAATGTTGCGCTGCATGCCCACACGTGCACGGTTTCCC
CCGAACTTAAGTCTCTCTCTCCCCCTCCCAAGCAATCGCGGCTCCGTCAG
TACCAGGTAGTGGGACGGCACGTGCCCACTGAGGCTCACCCCAACCCCAC
GGTGTTTCGGATGAAGATCTTTGCGCCAAACGAAGTAGTGGCCAAGTCCC
GCTTCTGGTACTTTCTGCACCAGATGCACAAAATGAAGAAGACCACGGGC
GAGATTCTGGACGTCAACGAGCTTGTTGAACGCAACGCCCGCATCGTCAA
GAATTACGCCATCTGGCTCAAATATGACTCCCGCTCCGGCACCCACAACA
TGTACCGCGAGTATCGTGACTTGACTCTCACTGGCGCCGTTGACCAGCTC
TACTCGGAGATGGCGGGTCGCCACCGTGCTCGGTTCCGCTCTATCCAGAT
CATTCGCACGGGGGTCGTGACCGCCAAAGACGCCAAGCGCACACACACTA
TGCAGTACCATGTACGTATCTAGCACAGTCGGCCGCTTTTGAATGAGAGG
AGGGGGCAGGAAGGGTGCCATGGTGTGTGTTGATATTGACAGCATCATAC
ATAGTGTAGTGTCTGCATTTTTTCCCTTTAAGCTGCCTCTGCGCCCAATC
ACCCACGCATCACACTTCTCTCTTTCCTTTCCTCTTCCATTTTCACAGAA
TTCAAAGATTAAGTTTCCGTTGCCCCACCGCATCCAGCGACCGCCCACCA
AGAGCCTGCGTGGCGTCTACAAGGCCGTTCGACCCAACACCTACTTCCAC
TAGATCTCCACGTCTCCCTCTCCCTCTTTCCGCCTTTCCGGTCGGGAGCA
TATAATAGGATGGAATGGATGCGGCAGCAGCAATGCGAGGTAATGGACGG
GTTACAGGGTGTGAGCGATGCGGGGGCCTGGCATGGCATGGGAGGGAGGG
AGGGAATGGTGCCGTTTAGACGGGCACTTTAACGGTAGTAACAAAGAAAA
AACCAAAACCGAG back to topCoding sequence (CDS) from alignment at scaffold_10:721727..723089+ >mRNA_4487 ID=mRNA_4487|Name=jgi.p|Nanoce1779_2|589282|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_10:721727..723089+ (Nannochloropsis oceanica)
ATGGTGCAATCGCGGCTCCGTCAGTACCAGGTAGTGGGACGGCACGTGCC
CACTGAGGCTCACCCCAACCCCACGGTGTTTCGGATGAAGATCTTTGCGC
CAAACGAAGTAGTGGCCAAGTCCCGCTTCTGGTACTTTCTGCACCAGATG
CACAAAATGAAGAAGACCACGGGCGAGATTCTGGACGTCAACGAGCTTGT
TGAACGCAACGCCCGCATCGTCAAGAATTACGCCATCTGGCTCAAATATG
ACTCCCGCTCCGGCACCCACAACATGTACCGCGAGTATCGTGACTTGACT
CTCACTGGCGCCGTTGACCAGCTCTACTCGGAGATGGCGGGTCGCCACCG
TGCTCGGTTCCGCTCTATCCAGATCATTCGCACGGGGGTCGTGACCGCCA
AAGACGCCAAGCGCACACACACTATGCAGTACCATAATTCAAAGATTAAG
TTTCCGTTGCCCCACCGCATCCAGCGACCGCCCACCAAGAGCCTGCGTGG
CGTCTACAAGGCCGTTCGACCCAACACCTACTTCCACTAGATGGTGCAAT
CGCGGCTCCGTCAGTACCAGGTAGTGGGACGGCACGTGCCCACTGAGGCT
CACCCCAACCCCACGGTGTTTCGGATGAAGATCTTTGCGCCAAACGAAGT
AGTGGCCAAGTCCCGCTTCTGGTACTTTCTGCACCAGATGCACAAAATGA
AGAAGACCACGGGCGAGATTCTGGACGTCAACGAGCTTGTTGAACGCAAC
GCCCGCATCGTCAAGAATTACGCCATCTGGCTCAAATATGACTCCCGCTC
CGGCACCCACAACATGTACCGCGAGTATCGTGACTTGACTCTCACTGGCG
CCGTTGACCAGCTCTACTCGGAGATGGCGGGTCGCCACCGTGCTCGGTTC
CGCTCTATCCAGATCATTCGCACGGGGGTCGTGACCGCCAAAGACGCCAA
GCGCACACACACTATGCAGTACCATAATTCAAAGATTAAGTTTCCGTTGC
CCCACCGCATCCAGCGACCGCCCACCAAGAGCCTGCGTGGCGTCTACAAG
GCCGTTCGACCCAACACCTACTTCCACTAGATGGTGCAATCGCGGCTCCG
TCAGTACCAGGTAGTGGGACGGCACGTGCCCACTGAGGCTCACCCCAACC
CCACGGTGTTTCGGATGAAGATCTTTGCGCCAAACGAAGTAGTGGCCAAG
TCCCGCTTCTGGTACTTTCTGCACCAGATGCACAAAATGAAGAAGACCAC
GGGCGAGATTCTGGACGTCAACGAGCTTGTTGAACGCAACGCCCGCATCG
TCAAGAATTACGCCATCTGGCTCAAATATGACTCCCGCTCCGGCACCCAC
AACATGTACCGCGAGTATCGTGACTTGACTCTCACTGGCGCCGTTGACCA
GCTCTACTCGGAGATGGCGGGTCGCCACCGTGCTCGGTTCCGCTCTATCC
AGATCATTCGCACGGGGGTCGTGACCGCCAAAGACGCCAAGCGCACACAC
ACTATGCAGTACCATAATTCAAAGATTAAGTTTCCGTTGCCCCACCGCAT
CCAGCGACCGCCCACCAAGAGCCTGCGTGGCGTCTACAAGGCCGTTCGAC
CCAACACCTACTTCCACTAG back to top
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