jgi.p|Nanoce1779_2|24938, mRNA_4485 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|24938
Unique Name	mRNA_4485
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2049
Alignment location	scaffold_10:715180..717535 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	25024
Track	FilteredModels2
ProteinId	24938

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:715180..717535 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|24938	gene_4485	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|24938	mRNA_4485-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4485	CDS_4485	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:715180..717535+
coding sequence from alignment at scaffold_10:715180..717535+

mRNA sequence

>mRNA_4485 ID=mRNA_4485|Name=jgi.p|Nanoce1779_2|24938|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp
CACGAAGAGTACCTGTGTGTTGATGTTCACATTATTAGGGAGTGCGCTTC
TAACGGCAGCAGGCGGGCGTTAGCATCCTGAGTGCTCCGGCATGTCATGC
ATACTATAGTAACCGCGCTCCACAACGCTTGCCCATAAATTCGAGCACAT
TCTTGCTATTTAGCCGCTCCTACTGAAGCCCGCCCTACCCCTGTTCTATG
CCCACAAGAACAGAGGCAAAGCAGTAGCAGCTCGATCGATCGAGACATCT
CCCGCATCTCCCACAGCCTTTCCTTTAGCTTGAGTCAACAGCGCGCCGCT
GCTCCCCACAGCACAACTAAAACAACAACTACCACCAAAACTATGGCGTA
CCCAAACCTCGCAGACCTCCACGCACTGCAGCTCAAGCTTTACATCGGAG
GCCAGTTCATGGAGGCACCGTTGACCATGCCGGTCATCGACCCTGCCAGT
GAAGAATTGATTGTGAACGCCCCTGCAGCCTCCGAATCTCACGTGAATCA
AGCCGTAGAGGCCGCCCGCGGGGCCTTTCCCTACTGGTCCTCGCTCAGCG
GCGCCGATCGTGCGAAGTACTTGGACGCCATTGCCCAAGCCGTCAAGCGC
CACAAGCCTGAGCTGGCGGAGCTAGAGTCCCGGGATAATGGCAAGCCCCT
ACCTGAGGCAATGTGGGACTTGGATGATGTCAGCGGCACCTTTACTTACT
ATGCTGGTCTTGCCCGCGAGCTCGACGGGAAGCAGTACGAGCCCGTCACG
GATCTCCCGCCTGGTGTGGACTATACGGCCTCCTTGCGATACGAAGCTGT
AGGGGTAGTCGCGGCCATCGTGCCTTGGAACTACCCCCTCTTGATGGCCA
CCTGGAAGCTGGCTCCCGCCCTGGCGGCCGGCTGTACGGTCGTACTTAAG
CCTTCGGAGGTGACTCCACTGACGGCTCTTGCCTTTGCGAAGGTGTTAGA
GCAAGTTGGAATGCCTGCGGGGGTGGTCAATATCGTGACTGGTGGACCGG
ACATTGGATCGATATTGTCTAATCATGATGCAATTGACAAAATTACGTTT
ACGGGCTCCGTACCGACGGGTATCAAGATTATGACGGCTGCGGCTAAGGG
CATCAAGAATATTACCTTAGAACTCGGTGGCAAAAGCCCAGCCATCGTAT
TTGACTCGTGCGATCTCGTCCGCACCGTAGAATGGGTCATGTTCGGGTGC
TTCTGGACAAATGGACAAATCTGCTCTGCAACTTCTCGCCTACTAATCCA
AGATAAAATATACGAGCAATTTATCGAGAAGCTCGTGGAAGAGACCAATA
AAGTTAAGGTTGGCAACCCGTTGGGGGAAGGCGTGAGGATGGGGCCTCTG
GTCAACAAGAGCCAATACGAAAAAGTTCTTGGTTTTGTGAGCCGGGCAAA
GGCAGAGGGGGCTACTGTTGTCGCGGGGCGAGAGCGGCCGATAGATTGCC
CAAGGGGATATTTCATGCGGCCCACAATTTTGACGGGGGTAACGACCTCG
TCTGAGGTTTGGTGCAACGAGATTTTTGGGCCGGTCTTGTCGGTGTTGCC
ATTCAGCACCGAGGAGGAGGCTATCAGGTTAGCTAATGATACGGAGTTTG
GACTGGCGGGTGCGGTATTCTCGGGGGACGTGGCACAGCTGAATCGGGTG
ACAGAGCAGTTGCGGGTGGGATGCGTGTGGAGGAATTGTAGCCAGCCTTG
TTTTTCACAACTGCCCTGGGGGGGCATGAAGCGGAGTGGGTTGGGAAGAG
ATTTAGGTAGGGAGGGCTTGAAATCTTATTTGGAGACGAAGCAGATTGTC
ACGCATGTTACGGCCAATCCTCTGGGTTGGTATAATATCGCGAAGCTCTG
AAATTGAGAGGGTGGTGGAATAGAAGACTAGTAAAACGCAAAGTTCAATT
AGACGAAGAAGGATTTGAGAAAAGCGTACGATTGCCACGTACGATCTGTT
CAAATGTGATCATTTTAGAATTTTGAAAGGTTGGAATGCTACTACACGGG
TCAATAAATTCTGAGTCTGAATAATCAAAAGTGAAGAAAAAGATGAAAA

protein sequence of jgi.p|Nanoce1779_2|24938

>mRNA_4485-protein ID=mRNA_4485-protein|Name=jgi.p|Nanoce1779_2|24938|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MAYPNLADLHALQLKLYIGGQFMEAPLTMPVIDPASEELIVNAPAASESH
VNQAVEAARGAFPYWSSLSGADRAKYLDAIAQAVKRHKPELAELESRDNG
KPLPEAMWDLDDVSGTFTYYAGLARELDGKQYEPVTDLPPGVDYTASLRY
EAVGVVAAIVPWNYPLLMATWKLAPALAAGCTVVLKPSEVTPLTALAFAK
VLEQVGMPAGVVNIVTGGPDIGSILSNHDAIDKITFTGSVPTGIKIMTAA
AKGIKNITLELGGKSPAIVFDSCDLVRTVEWVMFGCFWTNGQICSATSRL
LIQDKIYEQFIEKLVEETNKVKVGNPLGEGVRMGPLVNKSQYEKVLGFVS
RAKAEGATVVAGRERPIDCPRGYFMRPTILTGVTTSSEVWCNEIFGPVLS
VLPFSTEEEAIRLANDTEFGLAGAVFSGDVAQLNRVTEQLRVGCVWRNCS
QPCFSQLPWGGMKRSGLGRDLGREGLKSYLETKQIVTHVTANPLGWYNIA
KL*

mRNA from alignment at scaffold_10:715180..717535+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4485 ID=mRNA_4485|Name=jgi.p|Nanoce1779_2|24938|organism=Nannochloropsis oceanica|type=mRNA|length=2356bp|location=Sequence derived from alignment at scaffold_10:715180..717535+ (Nannochloropsis oceanica)
CACGAAGAGTACCTGTGTGTTGATGTTCACATTATTAGGGAGTGCGCTTC
TAACGGCAGCAGGCGGGCGTTAGCATCCTGAGTGCTCCGGCATGTCATGC
ATACTATAGTAACCGCGCTCCACAACGCTTGCCCATAAATTCGAGCACAT
TCTTGCTATTTAGCCGCTCCTACTGAAGCCCGCCCTACCCCTGTTCTATG
CCCACAAGAACAGAGGCAAAGCAGTAGCAGCTCGATCGATCGAGACATCT
CCCGCATCTCCCACAGCCTTTCCTTTAGCTTGAGTCAACAGCGCGCCGCT
GCTCCCCACAGCACAACTAAAACAACAACTACCACCAAAACTATGGCGTA
CCCAAACCTCGCAGACCTCCACGCACTGCAGCTCAAGCTTTACATCGGAG
GCCAGTTCATGGAGGCACCGTTGACCATGCCGGTCATCGACCCTGCCAGT
GAAGAATTGATTGTGAACGCCCCTGCAGGTGAGAAGATGAGAGGAACAAA
GCCGCAAGAACCTCCCCTCAAACTCACAAACATCCCCATGTTCTCCCTCC
TCTCCACTTCTCATCCCCATATTAGCCTCCGAATCTCACGTGAATCAAGC
CGTAGAGGCCGCCCGCGGGGCCTTTCCCTACTGGTCCTCGCTCAGCGGCG
CCGATCGTGCGAAGTACTTGGACGCCATTGCCCAAGCCGTCAAGCGCCAC
AAGCCTGAGCTGGCGGAGCTAGAGTCCCGGGATAATGGCAAGCCCCTACC
TGAGGCAATGTGGGACTTGGATGATGTCAGCGGCACCTTTACTTACTATG
CTGGTCTTGCCCGCGAGCTCGACGGGAAGCAGTACGAGCCCGTCACGGAT
CTCCCGCCTGGTGTGGACTATACGGCCTCCTTGCGATACGAAGCTGTAGG
GGTAGTCGCGGCCATCGTGCCTTGGAACTACCCCCTCTTGATGGCCACCT
GGAAGCTGGCTCCCGCCCTGGCGGCCGGCTGTACGGTCGTACTTAAGCCT
TCGGAGGTGACTCCACTGACGGCTCTTGCCTTTGCGAAGGTGTTAGAGCA
AGTTGGAATGCCTGCGGGGGTGGTCAATATCGTGACTGGTGGACCGGACA
TTGGATCGATATTGTCTAATCATGATGCAATTGACAAAATTACGTTTACG
GGCTCCGTACCGACGGGTATCAAGATTATGACGGCTGGTACGTGTTTTTG
GTTTTAACTAGAGTGGAAGAGAGTGAAAGGGAAGATAACGTGTTTGTCAT
CTTATTCTGGATGCGTAAGGTGATGTCGTTTCAAGCAGTGTAAATCGCTC
ATCTTTGAACGCTACTCTACATATACGGACACAATCTCACACTTGGCACG
CACGCCATTGTCTCGTTAATTCTTTCTTCTCTTTGCTACAAATACAGCGG
CTAAGGGCATCAAGAATATTACCTTAGAACTCGGTGGCAAAAGCCCAGCC
ATCGTATTTGACTCGTGCGATCTCGTCCGCACCGTAGAATGGGTCATGTT
CGGGTGCTTCTGGACAAATGGACAAATCTGCTCTGCAACTTCTCGCCTAC
TAATCCAAGATAAAATATACGAGCAATTTATCGAGAAGCTCGTGGAAGAG
ACCAATAAAGTTAAGGTTGGCAACCCGTTGGGGGAAGGCGTGAGGATGGG
GCCTCTGGTCAACAAGAGCCAATACGAAAAAGTTCTTGGTTTTGTGAGCC
GGGCAAAGGCAGAGGGGGCTACTGTTGTCGCGGGGCGAGAGCGGCCGATA
GATTGCCCAAGGGGATATTTCATGCGGCCCACAATTTTGACGGGGGTAAC
GACCTCGTCTGAGGTTTGGTGCAACGAGATTTTTGGGCCGGTCTTGTCGG
TGTTGCCATTCAGCACCGAGGAGGAGGCTATCAGGTTAGCTAATGATACG
GAGTTTGGACTGGCGGGTGCGGTATTCTCGGGGGACGTGGCACAGCTGAA
TCGGGTGACAGAGCAGTTGCGGGTGGGATGCGTGTGGAGGAATTGTAGCC
AGCCTTGTTTTTCACAACTGCCCTGGGGGGGCATGAAGCGGAGTGGGTTG
GGAAGAGATTTAGGTAGGGAGGGCTTGAAATCTTATTTGGAGACGAAGCA
GATTGTCACGCATGTTACGGCCAATCCTCTGGGTTGGTATAATATCGCGA
AGCTCTGAAATTGAGAGGGTGGTGGAATAGAAGACTAGTAAAACGCAAAG
TTCAATTAGACGAAGAAGGATTTGAGAAAAGCGTACGATTGCCACGTACG
ATCTGTTCAAATGTGATCATTTTAGAATTTTGAAAGGTTGGAATGCTACT
ACACGGGTCAATAAATTCTGAGTCTGAATAATCAAAAGTGAAGAAAAAGA
TGAAAA

Coding sequence (CDS) from alignment at scaffold_10:715180..717535+

>mRNA_4485 ID=mRNA_4485|Name=jgi.p|Nanoce1779_2|24938|organism=Nannochloropsis oceanica|type=CDS|length=4527bp|location=Sequence derived from alignment at scaffold_10:715180..717535+ (Nannochloropsis oceanica)
ATGGCGTACCCAAACCTCGCAGACCTCCACGCACTGCAGCTCAAGCTTTA
CATCGGAGGCCAGTTCATGGAGGCACCGTTGACCATGCCGGTCATCGACC
CTGCCAGTGAAGAATTGATTGTGAACGCCCCTGCAGCCTCCGAATCTCAC
GTGAATCAAGCCGTAGAGGCCGCCCGCGGGGCCTTTCCCTACTGGTCCTC
GCTCAGCGGCGCCGATCGTGCGAAGTACTTGGACGCCATTGCCCAAGCCG
TCAAGCGCCACAAGCCTGAGCTGGCGGAGCTAGAGTCCCGGGATAATGGC
AAGCCCCTACCTGAGGCAATGTGGGACTTGGATGATGTCAGCGGCACCTT
TACTTACTATGCTGGTCTTGCCCGCGAGCTCGACGGGAAGCAGTACGAGC
CCGTCACGGATCTCCCGCCTGGTGTGGACTATACGGCCTCCTTGCGATAC
GAAGCTGTAGGGGTAGTCGCGGCCATCGTGCCTTGGAACTACCCCCTCTT
GATGGCCACCTGGAAGCTGGCTCCCGCCCTGGCGGCCGGCTGTACGGTCG
TACTTAAGCCTTCGGAGGTGACTCCACTGACGGCTCTTGCCTTTGCGAAG
GTGTTAGAGCAAGTTGGAATGCCTGCGGGGGTGGTCAATATCGTGACTGG
TGGACCGGACATTGGATCGATATTGTCTAATCATGATGCAATTGACAAAA
TTACGTTTACGGGCTCCGTACCGACGGGTATCAAGATTATGACGGCTGCG
GCTAAGGGCATCAAGAATATTACCTTAGAACTCGGTGGCAAAAGCCCAGC
CATCGTATTTGACTCGTGCGATCTCGTCCGCACCGTAGAATGGGTCATGT
TCGGGTGCTTCTGGACAAATGGACAAATCTGCTCTGCAACTTCTCGCCTA
CTAATCCAAGATAAAATATACGAGCAATTTATCGAGAAGCTCGTGGAAGA
GACCAATAAAGTTAAGGTTGGCAACCCGTTGGGGGAAGGCGTGAGGATGG
GGCCTCTGGTCAACAAGAGCCAATACGAAAAAGTTCTTGGTTTTGTGAGC
CGGGCAAAGGCAGAGGGGGCTACTGTTGTCGCGGGGCGAGAGCGGCCGAT
AGATTGCCCAAGGGGATATTTCATGCGGCCCACAATTTTGACGGGGGTAA
CGACCTCGTCTGAGGTTTGGTGCAACGAGATTTTTGGGCCGGTCTTGTCG
GTGTTGCCATTCAGCACCGAGGAGGAGGCTATCAGGTTAGCTAATGATAC
GGAGTTTGGACTGGCGGGTGCGGTATTCTCGGGGGACGTGGCACAGCTGA
ATCGGGTGACAGAGCAGTTGCGGGTGGGATGCGTGTGGAGGAATTGTAGC
CAGCCTTGTTTTTCACAACTGCCCTGGGGGGGCATGAAGCGGAGTGGGTT
GGGAAGAGATTTAGGTAGGGAGGGCTTGAAATCTTATTTGGAGACGAAGC
AGATTGTCACGCATGTTACGGCCAATCCTCTGGGTTGGTATAATATCGCG
AAGCTCTGAATGGCGTACCCAAACCTCGCAGACCTCCACGCACTGCAGCT
CAAGCTTTACATCGGAGGCCAGTTCATGGAGGCACCGTTGACCATGCCGG
TCATCGACCCTGCCAGTGAAGAATTGATTGTGAACGCCCCTGCAGCCTCC
GAATCTCACGTGAATCAAGCCGTAGAGGCCGCCCGCGGGGCCTTTCCCTA
CTGGTCCTCGCTCAGCGGCGCCGATCGTGCGAAGTACTTGGACGCCATTG
CCCAAGCCGTCAAGCGCCACAAGCCTGAGCTGGCGGAGCTAGAGTCCCGG
GATAATGGCAAGCCCCTACCTGAGGCAATGTGGGACTTGGATGATGTCAG
CGGCACCTTTACTTACTATGCTGGTCTTGCCCGCGAGCTCGACGGGAAGC
AGTACGAGCCCGTCACGGATCTCCCGCCTGGTGTGGACTATACGGCCTCC
TTGCGATACGAAGCTGTAGGGGTAGTCGCGGCCATCGTGCCTTGGAACTA
CCCCCTCTTGATGGCCACCTGGAAGCTGGCTCCCGCCCTGGCGGCCGGCT
GTACGGTCGTACTTAAGCCTTCGGAGGTGACTCCACTGACGGCTCTTGCC
TTTGCGAAGGTGTTAGAGCAAGTTGGAATGCCTGCGGGGGTGGTCAATAT
CGTGACTGGTGGACCGGACATTGGATCGATATTGTCTAATCATGATGCAA
TTGACAAAATTACGTTTACGGGCTCCGTACCGACGGGTATCAAGATTATG
ACGGCTGCGGCTAAGGGCATCAAGAATATTACCTTAGAACTCGGTGGCAA
AAGCCCAGCCATCGTATTTGACTCGTGCGATCTCGTCCGCACCGTAGAAT
GGGTCATGTTCGGGTGCTTCTGGACAAATGGACAAATCTGCTCTGCAACT
TCTCGCCTACTAATCCAAGATAAAATATACGAGCAATTTATCGAGAAGCT
CGTGGAAGAGACCAATAAAGTTAAGGTTGGCAACCCGTTGGGGGAAGGCG
TGAGGATGGGGCCTCTGGTCAACAAGAGCCAATACGAAAAAGTTCTTGGT
TTTGTGAGCCGGGCAAAGGCAGAGGGGGCTACTGTTGTCGCGGGGCGAGA
GCGGCCGATAGATTGCCCAAGGGGATATTTCATGCGGCCCACAATTTTGA
CGGGGGTAACGACCTCGTCTGAGGTTTGGTGCAACGAGATTTTTGGGCCG
GTCTTGTCGGTGTTGCCATTCAGCACCGAGGAGGAGGCTATCAGGTTAGC
TAATGATACGGAGTTTGGACTGGCGGGTGCGGTATTCTCGGGGGACGTGG
CACAGCTGAATCGGGTGACAGAGCAGTTGCGGGTGGGATGCGTGTGGAGG
AATTGTAGCCAGCCTTGTTTTTCACAACTGCCCTGGGGGGGCATGAAGCG
GAGTGGGTTGGGAAGAGATTTAGGTAGGGAGGGCTTGAAATCTTATTTGG
AGACGAAGCAGATTGTCACGCATGTTACGGCCAATCCTCTGGGTTGGTAT
AATATCGCGAAGCTCTGAATGGCGTACCCAAACCTCGCAGACCTCCACGC
ACTGCAGCTCAAGCTTTACATCGGAGGCCAGTTCATGGAGGCACCGTTGA
CCATGCCGGTCATCGACCCTGCCAGTGAAGAATTGATTGTGAACGCCCCT
GCAGCCTCCGAATCTCACGTGAATCAAGCCGTAGAGGCCGCCCGCGGGGC
CTTTCCCTACTGGTCCTCGCTCAGCGGCGCCGATCGTGCGAAGTACTTGG
ACGCCATTGCCCAAGCCGTCAAGCGCCACAAGCCTGAGCTGGCGGAGCTA
GAGTCCCGGGATAATGGCAAGCCCCTACCTGAGGCAATGTGGGACTTGGA
TGATGTCAGCGGCACCTTTACTTACTATGCTGGTCTTGCCCGCGAGCTCG
ACGGGAAGCAGTACGAGCCCGTCACGGATCTCCCGCCTGGTGTGGACTAT
ACGGCCTCCTTGCGATACGAAGCTGTAGGGGTAGTCGCGGCCATCGTGCC
TTGGAACTACCCCCTCTTGATGGCCACCTGGAAGCTGGCTCCCGCCCTGG
CGGCCGGCTGTACGGTCGTACTTAAGCCTTCGGAGGTGACTCCACTGACG
GCTCTTGCCTTTGCGAAGGTGTTAGAGCAAGTTGGAATGCCTGCGGGGGT
GGTCAATATCGTGACTGGTGGACCGGACATTGGATCGATATTGTCTAATC
ATGATGCAATTGACAAAATTACGTTTACGGGCTCCGTACCGACGGGTATC
AAGATTATGACGGCTGCGGCTAAGGGCATCAAGAATATTACCTTAGAACT
CGGTGGCAAAAGCCCAGCCATCGTATTTGACTCGTGCGATCTCGTCCGCA
CCGTAGAATGGGTCATGTTCGGGTGCTTCTGGACAAATGGACAAATCTGC
TCTGCAACTTCTCGCCTACTAATCCAAGATAAAATATACGAGCAATTTAT
CGAGAAGCTCGTGGAAGAGACCAATAAAGTTAAGGTTGGCAACCCGTTGG
GGGAAGGCGTGAGGATGGGGCCTCTGGTCAACAAGAGCCAATACGAAAAA
GTTCTTGGTTTTGTGAGCCGGGCAAAGGCAGAGGGGGCTACTGTTGTCGC
GGGGCGAGAGCGGCCGATAGATTGCCCAAGGGGATATTTCATGCGGCCCA
CAATTTTGACGGGGGTAACGACCTCGTCTGAGGTTTGGTGCAACGAGATT
TTTGGGCCGGTCTTGTCGGTGTTGCCATTCAGCACCGAGGAGGAGGCTAT
CAGGTTAGCTAATGATACGGAGTTTGGACTGGCGGGTGCGGTATTCTCGG
GGGACGTGGCACAGCTGAATCGGGTGACAGAGCAGTTGCGGGTGGGATGC
GTGTGGAGGAATTGTAGCCAGCCTTGTTTTTCACAACTGCCCTGGGGGGG
CATGAAGCGGAGTGGGTTGGGAAGAGATTTAGGTAGGGAGGGCTTGAAAT
CTTATTTGGAGACGAAGCAGATTGTCACGCATGTTACGGCCAATCCTCTG
GGTTGGTATAATATCGCGAAGCTCTGA

Synonyms

Publications