jgi.p|Nanoce1779_2|589270, mRNA_4484 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589270
Unique NamemRNA_4484
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length768
Alignment locationscaffold_10:714252..715230 -

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Properties
Property NameValue
TranscriptId589356
TrackFilteredModels2
ProteinId589270
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:714252..715230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589270gene_4484Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589270mRNA_4484-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4484CDS_4484Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4484 ID=mRNA_4484|Name=jgi.p|Nanoce1779_2|589270|organism=Nannochloropsis oceanica|type=mRNA|length=768bp
AGAAGCGCACTCCCTAATAATGTGAACATCAACACACAGGTACTCTTCGT
GACTCTAGCACACATCCATTACATGCGAACAGAAGACCATGTCAAGCTAG
ACGGCTTGGCCAAGCTGAATGTCCTGCCAGTGACAGATCTGAAGACCGAG
CTTCTCCGCATCTGCGGGTCCCGTGTTTGGGTAGAGGCCGTGGCCAAGAC
GTTCCCCCACACTTCGCCGGCATCTGTCCTGACAGCTATGGACAAGGCCT
GGTGGTCCCTGTCCAAACCCGATTACCTTGAGGCCTTCTCCGCTCACCCA
TGCATTGGAGACGCGGCGGCTTTGAAAAGGAAATACGAGGCGGCGGCCAT
GGTCACTAGCGGCACAGATTGTCCGGCATGGGAAGCAGACGAACAAAAAG
GGACAATAGGTGCAAGCGAAGAGATATTGCAAAGCCTGGCGAAGCACAAC
AGGTTGTACAAGGAACGTTTCGGGTACATCTTTTTGGTGTGTGCCACGGG
CAAGACGGCTGATGAAATGCTTACCTTATTGAAAGCCCGTATGTGCAACG
AAGCGGGCTATGAATTGACCGTGGCGGCGGCAGAACAATCGAAGATTACG
GTAATGCGGCTGCACAAGCTCTTGACTTCGATGGGAGCGCAGGAGGACGC
AAGTCGCTTATGAGCGGAAGAGTATCGAATATGAAGGAAGACTGTGATTG
ATGATGATTGATATACTCTGCGAAGTTGTTTTTTTCACGAATCTTCTGTT
CTTCCAAGAAATTGGTAA
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protein sequence of jgi.p|Nanoce1779_2|589270

>mRNA_4484-protein ID=mRNA_4484-protein|Name=jgi.p|Nanoce1779_2|589270|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MRTEDHVKLDGLAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPA
SVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDC
PAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEML
TLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLTSMGAQEDASRL*
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mRNA from alignment at scaffold_10:714252..715230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4484 ID=mRNA_4484|Name=jgi.p|Nanoce1779_2|589270|organism=Nannochloropsis oceanica|type=mRNA|length=979bp|location=Sequence derived from alignment at scaffold_10:714252..715230- (Nannochloropsis oceanica)
AGAAGCGCACTCCCTAATAATGTGAACATCAACACACAGGTACTCTTCGT
GACTCTAGCACACATCCATTACATGCGAACAGAAGACCATGTAAGAAGAG
GGGTGGGGAAAAATGGCTGACCAGCGCTCCCCTTTATGTTATGATTGACA
CGGCCTCTCCTTCATTTCCCATTCCTCATCACAAGGTCAAGCTAGACGGC
TTGGCCAAGCTGAATGTCCTGCCAGTGACAGATCTGAAGACCGAGCTTCT
CCGCATCTGCGGGTCCCGTGTTTGGGTAGAGGCCGTGGCCAAGACGTTCC
CCCACACTTCGCCGGCATCTGTCCTGACAGCTATGGACAAGGCCTGGTGG
TCCCTGTCCAAACCCGATTACCTTGAGGCCTTCTCCGCTCACCCATGCAT
TGGAGACGCGGCGGCTTTGAAAAGGGTGAGTCATTGTGCCATGCAATTTA
TCGAATTTTACTGTTTGGAAGACTTTTCAATGCGCCCTTTGCAGGAACGC
AACCCACCTGTATATTTTTTATTTCTCCACAACATAATCAGAAATACGAG
GCGGCGGCCATGGTCACTAGCGGCACAGATTGTCCGGCATGGGAAGCAGA
CGAACAAAAAGGGACAATAGGTGCAAGCGAAGAGATATTGCAAAGCCTGG
CGAAGCACAACAGGTTGTACAAGGAACGTTTCGGGTACATCTTTTTGGTG
TGTGCCACGGGCAAGACGGCTGATGAAATGCTTACCTTATTGAAAGCCCG
TATGTGCAACGAAGCGGGCTATGAATTGACCGTGGCGGCGGCAGAACAAT
CGAAGATTACGGTAATGCGGCTGCACAAGCTCTTGACTTCGATGGGAGCG
CAGGAGGACGCAAGTCGCTTATGAGCGGAAGAGTATCGAATATGAAGGAA
GACTGTGATTGATGATGATTGATATACTCTGCGAAGTTGTTTTTTTCACG
AATCTTCTGTTCTTCCAAGAAATTGGTAA
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Coding sequence (CDS) from alignment at scaffold_10:714252..715230-

>mRNA_4484 ID=mRNA_4484|Name=jgi.p|Nanoce1779_2|589270|organism=Nannochloropsis oceanica|type=CDS|length=1773bp|location=Sequence derived from alignment at scaffold_10:714252..715230- (Nannochloropsis oceanica)
AAATACGAGGCGGCGGCCATGGTCACTAGCGGCACAGATTGTCCGGCATG
GGAAGCAGACGAACAAAAAGGGACAATAGGTGCAAGCGAAGAGATATTGC
AAAGCCTGGCGAAGCACAACAGGTTGTACAAGGAACGTTTCGGGTACATC
TTTTTGGTGTGTGCCACGGGCAAGACGGCTGATGAAATGCTTACCTTATT
GAAAGCCCGTATGTGCAACGAAGCGGGCTATGAATTGACCGTGGCGGCGG
CAGAACAATCGAAGATTACGGTAATGCGGCTGCACAAGCTCTTGACTTCG
ATGGGAGCGCAGGAGGACGCAAGTCGCTTATGAGTCAAGCTAGACGGCTT
GGCCAAGCTGAATGTCCTGCCAGTGACAGATCTGAAGACCGAGCTTCTCC
GCATCTGCGGGTCCCGTGTTTGGGTAGAGGCCGTGGCCAAGACGTTCCCC
CACACTTCGCCGGCATCTGTCCTGACAGCTATGGACAAGGCCTGGTGGTC
CCTGTCCAAACCCGATTACCTTGAGGCCTTCTCCGCTCACCCATGCATTG
GAGACGCGGCGGCTTTGAAAAGGATGCGAACAGAAGACCATAAATACGAG
GCGGCGGCCATGGTCACTAGCGGCACAGATTGTCCGGCATGGGAAGCAGA
CGAACAAAAAGGGACAATAGGTGCAAGCGAAGAGATATTGCAAAGCCTGG
CGAAGCACAACAGGTTGTACAAGGAACGTTTCGGGTACATCTTTTTGGTG
TGTGCCACGGGCAAGACGGCTGATGAAATGCTTACCTTATTGAAAGCCCG
TATGTGCAACGAAGCGGGCTATGAATTGACCGTGGCGGCGGCAGAACAAT
CGAAGATTACGGTAATGCGGCTGCACAAGCTCTTGACTTCGATGGGAGCG
CAGGAGGACGCAAGTCGCTTATGAGTCAAGCTAGACGGCTTGGCCAAGCT
GAATGTCCTGCCAGTGACAGATCTGAAGACCGAGCTTCTCCGCATCTGCG
GGTCCCGTGTTTGGGTAGAGGCCGTGGCCAAGACGTTCCCCCACACTTCG
CCGGCATCTGTCCTGACAGCTATGGACAAGGCCTGGTGGTCCCTGTCCAA
ACCCGATTACCTTGAGGCCTTCTCCGCTCACCCATGCATTGGAGACGCGG
CGGCTTTGAAAAGGATGCGAACAGAAGACCATAAATACGAGGCGGCGGCC
ATGGTCACTAGCGGCACAGATTGTCCGGCATGGGAAGCAGACGAACAAAA
AGGGACAATAGGTGCAAGCGAAGAGATATTGCAAAGCCTGGCGAAGCACA
ACAGGTTGTACAAGGAACGTTTCGGGTACATCTTTTTGGTGTGTGCCACG
GGCAAGACGGCTGATGAAATGCTTACCTTATTGAAAGCCCGTATGTGCAA
CGAAGCGGGCTATGAATTGACCGTGGCGGCGGCAGAACAATCGAAGATTA
CGGTAATGCGGCTGCACAAGCTCTTGACTTCGATGGGAGCGCAGGAGGAC
GCAAGTCGCTTATGAGTCAAGCTAGACGGCTTGGCCAAGCTGAATGTCCT
GCCAGTGACAGATCTGAAGACCGAGCTTCTCCGCATCTGCGGGTCCCGTG
TTTGGGTAGAGGCCGTGGCCAAGACGTTCCCCCACACTTCGCCGGCATCT
GTCCTGACAGCTATGGACAAGGCCTGGTGGTCCCTGTCCAAACCCGATTA
CCTTGAGGCCTTCTCCGCTCACCCATGCATTGGAGACGCGGCGGCTTTGA
AAAGGATGCGAACAGAAGACCAT
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Synonyms
Publications