jgi.p|Nanoce1779_2|636785, mRNA_448 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|636785
Unique Name	mRNA_448
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1188
Alignment location	scaffold_3:1104661..1106375 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	636871
Track	FilteredModels2
ProteinId	636785

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1104661..1106375 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636785	gene_448	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636785	mRNA_448-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_448	CDS_448	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1104661..1106375+
coding sequence from alignment at scaffold_3:1104661..1106375+

mRNA sequence

>mRNA_448 ID=mRNA_448|Name=jgi.p|Nanoce1779_2|636785|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp
ATGGAGGAGGAAGCGCCTCTGCAGTTTTACGGCTGTGGAGTCAATTCGTT
TTTCCAACTCGGGCCTCTCATGACCGATGGCCAAGGCGGAGGAGCAAACG
ACAAGGAACACACCACAAGTATTCCCCAAGGCCAGCATCCGTCCCATCAT
TCACGAGCGCAGGCTTGTGCCCTTCATTTACCTCAGCCTCTTGCGTTTGA
TCGATTTTTGGCGGAGGAGGACGGCCCTGTAAAGGATTTGTCATGTGGCT
CGACGTTCACCGTTGCCTTGACGACCCGCGGCATTCCGTATCAGTGGGGG
ATCTTGAATGGGCGGGCTTTCCCGGAACCGACGCGGGTCTCGTTGGGCGT
GCCCTTGCGGTGCATGCAAGTGGCATGTGGCCGTAAGCATACACTAGCAT
TAATGGAGGGAGGTTATATCATGAGCTGGGGTGTCGGCTATTTCGGCCAG
CTTGGGCACGGTGACGACCTTTCGTGTGACAGGCCGCGGATGGTCCACCT
GTTGGATCCTCCCCGCTTGGGGGGAGATCATGTCGTGGCCATTGCGTGTG
GGGGGTTGCATTCCGCCGTGTCGACAGCGGGGCAGTCGGTGTATTGTTTC
GGGTTTAACCGATACGGGCAGGTGGGGCAGGGGCAGACGAGTGATAAAAT
TTCTACACCGCGGCCAGTGAGCATGAGCATGATAGGTCCTGCAAGAATAC
GACAATTGGCCTGCGGGCGGCATCACACCTCCGTTTTAACAGACAAGGGA
CATGTCTTCTCTTGGGGTGCATCTTCCTTCGGTCGTCTCGGCCTGCCGGA
CCCCAAAAAAGTAGTCACATTGCCGACAGAAGTCATTTCTTTTCGCGCGT
GCCCTCTCGCGGCATTGGCCTGCGGGGACTTTCATGTGCTGGCGTTGGGG
ATGGATGGGAAGGTTTATGCGTGGGGGTATGGGGCCGAAGGACAGGGGGG
ACTGGGCGCAACGTTGCATTTGAGGACTCCCCGACCAGTGGAGGGATTGG
AAGGGCAGCAGGTGGCGCAGGTGGCGTGTGGAGCGTGGTGGTCGATGGTG
GTGACGAGACAAGGGTACGTTGAAGTGGACTTTTGTGCGGGGGGCGACGC
CTGTACTCCTGGGGCTACGGTGACGGTGGCTGGCTTGGACTCGAGCACGC
ATCGGAACTCCCCTATGTGGAGCCATGTCAACCTGTAA

protein sequence of jgi.p|Nanoce1779_2|636785

>mRNA_448-protein ID=mRNA_448-protein|Name=jgi.p|Nanoce1779_2|636785|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MEEEAPLQFYGCGVNSFFQLGPLMTDGQGGGANDKEHTTSIPQGQHPSHH
SRAQACALHLPQPLAFDRFLAEEDGPVKDLSCGSTFTVALTTRGIPYQWG
ILNGRAFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGYIMSWGVGYFGQ
LGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCF
GFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGRHHTSVLTDKG
HVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALG
MDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMV
VTRQGYVEVDFCAGGDACTPGATVTVAGLDSSTHRNSPMWSHVNL*

mRNA from alignment at scaffold_3:1104661..1106375+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_448 ID=mRNA_448|Name=jgi.p|Nanoce1779_2|636785|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp|location=Sequence derived from alignment at scaffold_3:1104661..1106375+ (Nannochloropsis oceanica)
ATGGAGGAGGAAGCGCCTCTGCAGTTTTACGGCTGTGGAGTCAATTCGTT
TTTCCAACTCGGGCCTCTCATGACCGATGGCCAAGGCGGAGGAGCAAACG
ACAAGGAACACACCACAAGTATTCCCCAAGGCCAGCATCCGTCCCATCAT
TCACGAGCGCAGGCTTGTGCCCTTCATTTACCTCAGCCTCTTGCGTTTGA
TCGATTTTTGGCGGAGGAGGACGGCCCTGTAAAGGATTTGTCATGTGGCT
CGACGTTCACCGTTGCCTTGACGACCCGCGGCATTCCGTATCAGTGGGGG
ATCTTGAATGGTACGTTTGCGCGCATGAAAAGAGGAGATGGAGAGATCCG
AAGAAAATGTTGCGCACGTATAATAGAGAGACCGAATGAGAGTCTGATTT
ACTTCTAACACAGGGCGGGCTTTCCCGGAACCGACGCGGGTCTCGTTGGG
CGTGCCCTTGCGGTGCATGCAAGTGGCATGTGGCCGTAAGCATACACTAG
CATTAATGGAGGGAGGTTATATCATGAGCTGGGGTACGTGCTGCTTTTTA
TATGACGAGGATGGGCAAGAGCAAGAAATACCGGTGTGCGAGCGGCGAGC
AGAGGGAAGCCCACTCATTCCTCCCGTTTCCTCCCTCCCTCCCTCCTTCC
CTCCCTCTTTCCGTCCTTTCCAGGTGTCGGCTATTTCGGCCAGCTTGGGC
ACGGTGACGACCTTTCGTGTGACAGGCCGCGGATGGTCCACCTGTTGGAT
CCTCCCCGCTTGGGGGGAGATCATGTCGTGGCCATTGCGTGTGGGGGGTT
GCATTCCGCCGTGTCGACAGCGGGGCAGTCGGTGTATTGTTTCGGGTTTA
ACCGATACGGGCAGGTGGGGCAGGGGCAGACGAGTGATAAAATTTCTACA
CCGCGGCCAGTGAGCATGAGCATGATAGGTAGGTGCTCGAGAGAAAGAGA
GGGAGGAGGGGAGGGAGGGAGGGAGAGGAGGGAGGGAGAGGAACCGGAAG
TTGCGTGTCTTCACCATCCTTATTCGTTCTACCTCTCTCCCTCATTTCCT
CCATTCACCCTCAGGTCCTGCAAGAATACGACAATTGGCCTGCGGGCGGC
ATCACACCTCCGTTTTAACAGACAAGGGACATGTCTTCTCTTGGGGTGCA
TCTTCCTTCGGTCGTCTCGGCCTGCCGGACCCCAAAAAAGTAGTCACATT
GCCGACAGAAGTCATTTCTTTTCGCGCGTGCCCTCTCGCGGCATTGGCCT
GCGGGGACTTTCATGTGCTGGCGTTGGGGATGGATGGGAAGGTTTATGCG
TGGGGGTATGGGGCCGAAGGACAGGGGGGACTGGGCGCAACGTTGCATTT
GAGGACTCCCCGACCAGTGGAGGGATTGGAAGGGCAGCAGGTGGCGCAGG
TGGCGTGTGGAGCGTGGTGGTCGATGGTGGTGACGAGACAAGGGTACGTT
GAAGTGGACTTTTGTGCGGGGGGCGGTAGAAAGAGTAGGCGGAGGTCGTC
CGGTGGCCCGGGAGGAGAAGGACAACGGCGTCCATGTTCCTTGCTCCTTC
CTTGTGCAGTGGTCTCGTCTCATCCGCTTTCTCCCTTCCTATCTTTTTCT
ATCTCTTCCCCCCTTCTCTTCAGACGCCTGTACTCCTGGGGCTACGGTGA
CGGTGGCTGGCTTGGACTCGAGCACGCATCGGAACTCCCCTATGTGGAGC
CATGTCAACCTGTAA

Coding sequence (CDS) from alignment at scaffold_3:1104661..1106375+

>mRNA_448 ID=mRNA_448|Name=jgi.p|Nanoce1779_2|636785|organism=Nannochloropsis oceanica|type=CDS|length=5940bp|location=Sequence derived from alignment at scaffold_3:1104661..1106375+ (Nannochloropsis oceanica)
ATGGAGGAGGAAGCGCCTCTGCAGTTTTACGGCTGTGGAGTCAATTCGTT
TTTCCAACTCGGGCCTCTCATGACCGATGGCCAAGGCGGAGGAGCAAACG
ACAAGGAACACACCACAAGTATTCCCCAAGGCCAGCATCCGTCCCATCAT
TCACGAGCGCAGGCTTGTGCCCTTCATTTACCTCAGCCTCTTGCGTTTGA
TCGATTTTTGGCGGAGGAGGACGGCCCTGTAAAGGATTTGTCATGTGGCT
CGACGTTCACCGTTGCCTTGACGACCCGCGGCATTCCGTATCAGTGGGGG
ATCTTGAATGGGCGGGCTTTCCCGGAACCGACGCGGGTCTCGTTGGGCGT
GCCCTTGCGGTGCATGCAAGTGGCATGTGGCCGTAAGCATACACTAGCAT
TAATGGAGGGAGGTTATATCATGAGCTGGGGTGTCGGCTATTTCGGCCAG
CTTGGGCACGGTGACGACCTTTCGTGTGACAGGCCGCGGATGGTCCACCT
GTTGGATCCTCCCCGCTTGGGGGGAGATCATGTCGTGGCCATTGCGTGTG
GGGGGTTGCATTCCGCCGTGTCGACAGCGGGGCAGTCGGTGTATTGTTTC
GGGTTTAACCGATACGGGCAGGTGGGGCAGGGGCAGACGAGTGATAAAAT
TTCTACACCGCGGCCAGTGAGCATGAGCATGATAGGTCCTGCAAGAATAC
GACAATTGGCCTGCGGGCGGCATCACACCTCCGTTTTAACAGACAAGGGA
CATGTCTTCTCTTGGGGTGCATCTTCCTTCGGTCGTCTCGGCCTGCCGGA
CCCCAAAAAAGTAGTCACATTGCCGACAGAAGTCATTTCTTTTCGCGCGT
GCCCTCTCGCGGCATTGGCCTGCGGGGACTTTCATGTGCTGGCGTTGGGG
ATGGATGGGAAGGTTTATGCGTGGGGGTATGGGGCCGAAGGACAGGGGGG
ACTGGGCGCAACGTTGCATTTGAGGACTCCCCGACCAGTGGAGGGATTGG
AAGGGCAGCAGGTGGCGCAGGTGGCGTGTGGAGCGTGGTGGTCGATGGTG
GTGACGAGACAAGGGTACGTTGAAGTGGACTTTTGTGCGGGGGGCGACGC
CTGTACTCCTGGGGCTACGGTGACGGTGGCTGGCTTGGACTCGAGCACGC
ATCGGAACTCCCCTATGTGGAGCCATGTCAACCTGTAAATGGAGGAGGAA
GCGCCTCTGCAGTTTTACGGCTGTGGAGTCAATTCGTTTTTCCAACTCGG
GCCTCTCATGACCGATGGCCAAGGCGGAGGAGCAAACGACAAGGAACACA
CCACAAGTATTCCCCAAGGCCAGCATCCGTCCCATCATTCACGAGCGCAG
GCTTGTGCCCTTCATTTACCTCAGCCTCTTGCGTTTGATCGATTTTTGGC
GGAGGAGGACGGCCCTGTAAAGGATTTGTCATGTGGCTCGACGTTCACCG
TTGCCTTGACGACCCGCGGCATTCCGTATCAGTGGGGGATCTTGAATGGG
CGGGCTTTCCCGGAACCGACGCGGGTCTCGTTGGGCGTGCCCTTGCGGTG
CATGCAAGTGGCATGTGGCCGTAAGCATACACTAGCATTAATGGAGGGAG
GTTATATCATGAGCTGGGGTGTCGGCTATTTCGGCCAGCTTGGGCACGGT
GACGACCTTTCGTGTGACAGGCCGCGGATGGTCCACCTGTTGGATCCTCC
CCGCTTGGGGGGAGATCATGTCGTGGCCATTGCGTGTGGGGGGTTGCATT
CCGCCGTGTCGACAGCGGGGCAGTCGGTGTATTGTTTCGGGTTTAACCGA
TACGGGCAGGTGGGGCAGGGGCAGACGAGTGATAAAATTTCTACACCGCG
GCCAGTGAGCATGAGCATGATAGGTCCTGCAAGAATACGACAATTGGCCT
GCGGGCGGCATCACACCTCCGTTTTAACAGACAAGGGACATGTCTTCTCT
TGGGGTGCATCTTCCTTCGGTCGTCTCGGCCTGCCGGACCCCAAAAAAGT
AGTCACATTGCCGACAGAAGTCATTTCTTTTCGCGCGTGCCCTCTCGCGG
CATTGGCCTGCGGGGACTTTCATGTGCTGGCGTTGGGGATGGATGGGAAG
GTTTATGCGTGGGGGTATGGGGCCGAAGGACAGGGGGGACTGGGCGCAAC
GTTGCATTTGAGGACTCCCCGACCAGTGGAGGGATTGGAAGGGCAGCAGG
TGGCGCAGGTGGCGTGTGGAGCGTGGTGGTCGATGGTGGTGACGAGACAA
GGGTACGTTGAAGTGGACTTTTGTGCGGGGGGCGACGCCTGTACTCCTGG
GGCTACGGTGACGGTGGCTGGCTTGGACTCGAGCACGCATCGGAACTCCC
CTATGTGGAGCCATGTCAACCTGTAAATGGAGGAGGAAGCGCCTCTGCAG
TTTTACGGCTGTGGAGTCAATTCGTTTTTCCAACTCGGGCCTCTCATGAC
CGATGGCCAAGGCGGAGGAGCAAACGACAAGGAACACACCACAAGTATTC
CCCAAGGCCAGCATCCGTCCCATCATTCACGAGCGCAGGCTTGTGCCCTT
CATTTACCTCAGCCTCTTGCGTTTGATCGATTTTTGGCGGAGGAGGACGG
CCCTGTAAAGGATTTGTCATGTGGCTCGACGTTCACCGTTGCCTTGACGA
CCCGCGGCATTCCGTATCAGTGGGGGATCTTGAATGGGCGGGCTTTCCCG
GAACCGACGCGGGTCTCGTTGGGCGTGCCCTTGCGGTGCATGCAAGTGGC
ATGTGGCCGTAAGCATACACTAGCATTAATGGAGGGAGGTTATATCATGA
GCTGGGGTGTCGGCTATTTCGGCCAGCTTGGGCACGGTGACGACCTTTCG
TGTGACAGGCCGCGGATGGTCCACCTGTTGGATCCTCCCCGCTTGGGGGG
AGATCATGTCGTGGCCATTGCGTGTGGGGGGTTGCATTCCGCCGTGTCGA
CAGCGGGGCAGTCGGTGTATTGTTTCGGGTTTAACCGATACGGGCAGGTG
GGGCAGGGGCAGACGAGTGATAAAATTTCTACACCGCGGCCAGTGAGCAT
GAGCATGATAGGTCCTGCAAGAATACGACAATTGGCCTGCGGGCGGCATC
ACACCTCCGTTTTAACAGACAAGGGACATGTCTTCTCTTGGGGTGCATCT
TCCTTCGGTCGTCTCGGCCTGCCGGACCCCAAAAAAGTAGTCACATTGCC
GACAGAAGTCATTTCTTTTCGCGCGTGCCCTCTCGCGGCATTGGCCTGCG
GGGACTTTCATGTGCTGGCGTTGGGGATGGATGGGAAGGTTTATGCGTGG
GGGTATGGGGCCGAAGGACAGGGGGGACTGGGCGCAACGTTGCATTTGAG
GACTCCCCGACCAGTGGAGGGATTGGAAGGGCAGCAGGTGGCGCAGGTGG
CGTGTGGAGCGTGGTGGTCGATGGTGGTGACGAGACAAGGGTACGTTGAA
GTGGACTTTTGTGCGGGGGGCGACGCCTGTACTCCTGGGGCTACGGTGAC
GGTGGCTGGCTTGGACTCGAGCACGCATCGGAACTCCCCTATGTGGAGCC
ATGTCAACCTGTAAATGGAGGAGGAAGCGCCTCTGCAGTTTTACGGCTGT
GGAGTCAATTCGTTTTTCCAACTCGGGCCTCTCATGACCGATGGCCAAGG
CGGAGGAGCAAACGACAAGGAACACACCACAAGTATTCCCCAAGGCCAGC
ATCCGTCCCATCATTCACGAGCGCAGGCTTGTGCCCTTCATTTACCTCAG
CCTCTTGCGTTTGATCGATTTTTGGCGGAGGAGGACGGCCCTGTAAAGGA
TTTGTCATGTGGCTCGACGTTCACCGTTGCCTTGACGACCCGCGGCATTC
CGTATCAGTGGGGGATCTTGAATGGGCGGGCTTTCCCGGAACCGACGCGG
GTCTCGTTGGGCGTGCCCTTGCGGTGCATGCAAGTGGCATGTGGCCGTAA
GCATACACTAGCATTAATGGAGGGAGGTTATATCATGAGCTGGGGTGTCG
GCTATTTCGGCCAGCTTGGGCACGGTGACGACCTTTCGTGTGACAGGCCG
CGGATGGTCCACCTGTTGGATCCTCCCCGCTTGGGGGGAGATCATGTCGT
GGCCATTGCGTGTGGGGGGTTGCATTCCGCCGTGTCGACAGCGGGGCAGT
CGGTGTATTGTTTCGGGTTTAACCGATACGGGCAGGTGGGGCAGGGGCAG
ACGAGTGATAAAATTTCTACACCGCGGCCAGTGAGCATGAGCATGATAGG
TCCTGCAAGAATACGACAATTGGCCTGCGGGCGGCATCACACCTCCGTTT
TAACAGACAAGGGACATGTCTTCTCTTGGGGTGCATCTTCCTTCGGTCGT
CTCGGCCTGCCGGACCCCAAAAAAGTAGTCACATTGCCGACAGAAGTCAT
TTCTTTTCGCGCGTGCCCTCTCGCGGCATTGGCCTGCGGGGACTTTCATG
TGCTGGCGTTGGGGATGGATGGGAAGGTTTATGCGTGGGGGTATGGGGCC
GAAGGACAGGGGGGACTGGGCGCAACGTTGCATTTGAGGACTCCCCGACC
AGTGGAGGGATTGGAAGGGCAGCAGGTGGCGCAGGTGGCGTGTGGAGCGT
GGTGGTCGATGGTGGTGACGAGACAAGGGTACGTTGAAGTGGACTTTTGT
GCGGGGGGCGACGCCTGTACTCCTGGGGCTACGGTGACGGTGGCTGGCTT
GGACTCGAGCACGCATCGGAACTCCCCTATGTGGAGCCATGTCAACCTGT
AAATGGAGGAGGAAGCGCCTCTGCAGTTTTACGGCTGTGGAGTCAATTCG
TTTTTCCAACTCGGGCCTCTCATGACCGATGGCCAAGGCGGAGGAGCAAA
CGACAAGGAACACACCACAAGTATTCCCCAAGGCCAGCATCCGTCCCATC
ATTCACGAGCGCAGGCTTGTGCCCTTCATTTACCTCAGCCTCTTGCGTTT
GATCGATTTTTGGCGGAGGAGGACGGCCCTGTAAAGGATTTGTCATGTGG
CTCGACGTTCACCGTTGCCTTGACGACCCGCGGCATTCCGTATCAGTGGG
GGATCTTGAATGGGCGGGCTTTCCCGGAACCGACGCGGGTCTCGTTGGGC
GTGCCCTTGCGGTGCATGCAAGTGGCATGTGGCCGTAAGCATACACTAGC
ATTAATGGAGGGAGGTTATATCATGAGCTGGGGTGTCGGCTATTTCGGCC
AGCTTGGGCACGGTGACGACCTTTCGTGTGACAGGCCGCGGATGGTCCAC
CTGTTGGATCCTCCCCGCTTGGGGGGAGATCATGTCGTGGCCATTGCGTG
TGGGGGGTTGCATTCCGCCGTGTCGACAGCGGGGCAGTCGGTGTATTGTT
TCGGGTTTAACCGATACGGGCAGGTGGGGCAGGGGCAGACGAGTGATAAA
ATTTCTACACCGCGGCCAGTGAGCATGAGCATGATAGGTCCTGCAAGAAT
ACGACAATTGGCCTGCGGGCGGCATCACACCTCCGTTTTAACAGACAAGG
GACATGTCTTCTCTTGGGGTGCATCTTCCTTCGGTCGTCTCGGCCTGCCG
GACCCCAAAAAAGTAGTCACATTGCCGACAGAAGTCATTTCTTTTCGCGC
GTGCCCTCTCGCGGCATTGGCCTGCGGGGACTTTCATGTGCTGGCGTTGG
GGATGGATGGGAAGGTTTATGCGTGGGGGTATGGGGCCGAAGGACAGGGG
GGACTGGGCGCAACGTTGCATTTGAGGACTCCCCGACCAGTGGAGGGATT
GGAAGGGCAGCAGGTGGCGCAGGTGGCGTGTGGAGCGTGGTGGTCGATGG
TGGTGACGAGACAAGGGTACGTTGAAGTGGACTTTTGTGCGGGGGGCGAC
GCCTGTACTCCTGGGGCTACGGTGACGGTGGCTGGCTTGGACTCGAGCAC
GCATCGGAACTCCCCTATGTGGAGCCATGTCAACCTGTAA

Synonyms

Publications