jgi.p|Nanoce1779_2|589251, mRNA_4479 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589251
Unique Name	mRNA_4479
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1135
Alignment location	scaffold_10:699278..700412 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589337
Track	FilteredModels2
ProteinId	589251

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:699278..700412 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589251	gene_4479	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589251	mRNA_4479-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4479	CDS_4479	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:699278..700412+
coding sequence from alignment at scaffold_10:699278..700412+

mRNA sequence

>mRNA_4479 ID=mRNA_4479|Name=jgi.p|Nanoce1779_2|589251|organism=Nannochloropsis oceanica|type=mRNA|length=1135bp
CAGCCTCCTACCCTCCCAGCTAATCCCTAGACTTTTATTTCGCCATGGAC
CCACACGACGAACAAGACGAGCTGGATTTCGACGACGATGAGGACCTACC
ATCTCATCCGACGCCGCCGCCCGTTAACAAAGAGCCAAACAAGCATTCAG
AAGACGCCGAGAAGAATACGGATAAGCCAAGGGGTGGGGAGATGGAGGGG
AGGAGAGGGAGCAAGCGCAGCCGCAGTGGCAAAAGACCACCGCGGGATGC
GCCTCGACCCATCAACATATTATTTTGCTCGTATCGAGACTATCTGGTGG
CCTTGCGTCGGGCTGGCCTCATTAGGGGAGGGAGCGAAGGAGACGGAGGC
TCGTCACGCAGACCGTGAAAACACGAAAAGATCAAAGCTGAAGGTATGGT
GAATAAATTATGCAGGTCTGCGCTTCAACTTGAGCTAAACTCCGCAAAGA
TCCGTCTCGATGCATGGCATATGTTGATTTATCTCTCTGCGCTTTCGTGT
AGATTTGGGGCTTTTCAAAGCGCAATGATGCATGCACCCACGTCACCCAG
ACATGCGACATCACCGCTACTAGTAGTACTCATACATTTCATTTTTCACC
ATAACTCCTTTGCCTTCTCCAACCGCAGAGGGAAAACCAACTCCATCCCA
AGCACTTTTACAGCTAATTGCATTTGCCAGTGCATCCCGCCAGGGCCTAC
GGTCCATTATCATCTAGTCCGCACTGATCAAGTCGTCAAAGACTTACGCG
CCAGAAAGGTTGAAGGAGCAATTGTACCTCGCCTGCTGGAATGCTTAACC
CATTGAAATGCACACGTACGATCTATCAATCGGCTAGCGGCAACGATTCG
GCATCCTTTTGCACACTCTCGCCACGAAATTGACCTGTCCGGGACAAGTT
GCCTCGCCAGCCAGCTCGAAAGCCCAGTGACACTGAAGTCGCCTTGGCAA
AAATCGCTGAAGTAAGCCTTATTATTTCGCAGCGAAGTCGACACGGTACA
TGTCGTCGGAATCAATGTAGGTTCCAGCGAAATGTGTAAGCCTAGCTGCC
TTCTCATTTTTCCTTCTTAGACACAACCCTTCTCAATTATTGAGATGTTT
AGAAGAGGAAGGAACAGCAACAAGAGCGACGCGTA

protein sequence of jgi.p|Nanoce1779_2|589251

>mRNA_4479-protein ID=mRNA_4479-protein|Name=jgi.p|Nanoce1779_2|589251|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MVNKLCRSALQLELNSAKIRLDAWHMLIYLSALSCRFGAFQSAMMHAPTS
PRHATSPLLVVLIHFIFHHNSFAFSNRRGKTNSIPSTFTANCICQCIPPG
PTVHYHLVRTDQVVKDLRARKVEGAIVPRLLECLTH*

mRNA from alignment at scaffold_10:699278..700412+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4479 ID=mRNA_4479|Name=jgi.p|Nanoce1779_2|589251|organism=Nannochloropsis oceanica|type=mRNA|length=1135bp|location=Sequence derived from alignment at scaffold_10:699278..700412+ (Nannochloropsis oceanica)
CAGCCTCCTACCCTCCCAGCTAATCCCTAGACTTTTATTTCGCCATGGAC
CCACACGACGAACAAGACGAGCTGGATTTCGACGACGATGAGGACCTACC
ATCTCATCCGACGCCGCCGCCCGTTAACAAAGAGCCAAACAAGCATTCAG
AAGACGCCGAGAAGAATACGGATAAGCCAAGGGGTGGGGAGATGGAGGGG
AGGAGAGGGAGCAAGCGCAGCCGCAGTGGCAAAAGACCACCGCGGGATGC
GCCTCGACCCATCAACATATTATTTTGCTCGTATCGAGACTATCTGGTGG
CCTTGCGTCGGGCTGGCCTCATTAGGGGAGGGAGCGAAGGAGACGGAGGC
TCGTCACGCAGACCGTGAAAACACGAAAAGATCAAAGCTGAAGGTATGGT
GAATAAATTATGCAGGTCTGCGCTTCAACTTGAGCTAAACTCCGCAAAGA
TCCGTCTCGATGCATGGCATATGTTGATTTATCTCTCTGCGCTTTCGTGT
AGATTTGGGGCTTTTCAAAGCGCAATGATGCATGCACCCACGTCACCCAG
ACATGCGACATCACCGCTACTAGTAGTACTCATACATTTCATTTTTCACC
ATAACTCCTTTGCCTTCTCCAACCGCAGAGGGAAAACCAACTCCATCCCA
AGCACTTTTACAGCTAATTGCATTTGCCAGTGCATCCCGCCAGGGCCTAC
GGTCCATTATCATCTAGTCCGCACTGATCAAGTCGTCAAAGACTTACGCG
CCAGAAAGGTTGAAGGAGCAATTGTACCTCGCCTGCTGGAATGCTTAACC
CATTGAAATGCACACGTACGATCTATCAATCGGCTAGCGGCAACGATTCG
GCATCCTTTTGCACACTCTCGCCACGAAATTGACCTGTCCGGGACAAGTT
GCCTCGCCAGCCAGCTCGAAAGCCCAGTGACACTGAAGTCGCCTTGGCAA
AAATCGCTGAAGTAAGCCTTATTATTTCGCAGCGAAGTCGACACGGTACA
TGTCGTCGGAATCAATGTAGGTTCCAGCGAAATGTGTAAGCCTAGCTGCC
TTCTCATTTTTCCTTCTTAGACACAACCCTTCTCAATTATTGAGATGTTT
AGAAGAGGAAGGAACAGCAACAAGAGCGACGCGTA

Coding sequence (CDS) from alignment at scaffold_10:699278..700412+

>mRNA_4479 ID=mRNA_4479|Name=jgi.p|Nanoce1779_2|589251|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_10:699278..700412+ (Nannochloropsis oceanica)
ATGGTGAATAAATTATGCAGGTCTGCGCTTCAACTTGAGCTAAACTCCGC
AAAGATCCGTCTCGATGCATGGCATATGTTGATTTATCTCTCTGCGCTTT
CGTGTAGATTTGGGGCTTTTCAAAGCGCAATGATGCATGCACCCACGTCA
CCCAGACATGCGACATCACCGCTACTAGTAGTACTCATACATTTCATTTT
TCACCATAACTCCTTTGCCTTCTCCAACCGCAGAGGGAAAACCAACTCCA
TCCCAAGCACTTTTACAGCTAATTGCATTTGCCAGTGCATCCCGCCAGGG
CCTACGGTCCATTATCATCTAGTCCGCACTGATCAAGTCGTCAAAGACTT
ACGCGCCAGAAAGGTTGAAGGAGCAATTGTACCTCGCCTGCTGGAATGCT
TAACCCATTGA

Synonyms

Publications