jgi.p|Nanoce1779_2|589240, mRNA_4477 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589240
Unique NamemRNA_4477
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length861
Alignment locationscaffold_10:694752..695633 -

Link to JBrowse

Properties
Property NameValue
TranscriptId589326
TrackFilteredModels2
ProteinId589240
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:694752..695633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589240gene_4477Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589240mRNA_4477-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4477CDS_4477Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4477 ID=mRNA_4477|Name=jgi.p|Nanoce1779_2|589240|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
ATGCCATGCTATTGTGGTGACCGGAGGAGCGGACCGAACTCGATCTACCA
TGCTGCTGCTGCTGCTGCTGCTGCCACCACCTGAAATGCCCCGAAGAGCG
TCCCGCTCGTTCAAATGCTCCCGCTTGGCCAGCTCTGTCCAAGTACCCCC
GGTGGAGTGAAGTTGTCCGTCCTTCTCGTCGTCCATGTTCTCAAACGCTT
TCTTCACAAATATGAAGACCTCCCGCAGTTCGCCTTCTCCATGCTGGTCC
CTCCACCGCACGGCCTTCTTCTTTTTGGAATTCTCATGTAAGGGCGGTCC
TGCGGCTGGTGCCGTCGATGGTGGTCGTGCAACGACTGGTTGTCCTGCTG
CTTCTGCTGCTAACCCCCTTTGTCCTTCTTCACTTGCGCCTGTGCTCGTT
TTGGTGCTGTCAATTTGTGATGCAGGGTGGGGAACGGCAAAGTTTTCCTC
TCCATTGTCCCTTGACGACGGCGAAGGTCCAATCGGACTGCCAGCCACCA
CCTGTATACCGCCTCCCTGGCCCCGCTTGCGCAGATCAATTCGCTTGGCC
TTGGCATCGGCAGCAGCTTCCGCTTCTTCCATCGTCACTTGCCGGGGCCG
TTTGACTGACAAATCTCCTGCCGGCTGCTGCGCGAAAGTCTTGCTGGTCT
TGCTGACAGTCGCGGCCGCTGTTGCTCCTGTCATATCCGCTGGGACTGCT
GCTGCTAGTGATGCCGTCACTGGCGCGGTCACTGCAGCAGCTGCCGCCGA
TTGTTCTTGATGTCGCCTATATTGACTGATATTCGCATATTCAGCCCACT
TGTCTGTCACCACTTGGGCCAACTTGGACACGACGGCATGCGCGGCCTGT
CCCCCCCTTCC
back to top

protein sequence of jgi.p|Nanoce1779_2|589240

>mRNA_4477-protein ID=mRNA_4477-protein|Name=jgi.p|Nanoce1779_2|589240|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MFSNAFFTNMKTSRSSPSPCWSLHRTAFFFLEFSCKGGPAAGAVDGGRAT
TGCPAASAANPLCPSSLAPVLVLVLSICDAGWGTAKFSSPLSLDDGEGPI
GLPATTCIPPPWPRLRRSIRLALASAAASASSIVTCRGRLTDKSPAGCCA
KVLLVLLTVAAAVAPVISAGTAAASDAVTGAVTAAAAADCS*
back to top

mRNA from alignment at scaffold_10:694752..695633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4477 ID=mRNA_4477|Name=jgi.p|Nanoce1779_2|589240|organism=Nannochloropsis oceanica|type=mRNA|length=882bp|location=Sequence derived from alignment at scaffold_10:694752..695633- (Nannochloropsis oceanica)
ATGCCATGCTATTGTGGTGACCGGAGGAGCGGACCGAACTCGATCTACCA
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCACCA
CCTGAAATGCCCCGAAGAGCGTCCCGCTCGTTCAAATGCTCCCGCTTGGC
CAGCTCTGTCCAAGTACCCCCGGTGGAGTGAAGTTGTCCGTCCTTCTCGT
CGTCCATGTTCTCAAACGCTTTCTTCACAAATATGAAGACCTCCCGCAGT
TCGCCTTCTCCATGCTGGTCCCTCCACCGCACGGCCTTCTTCTTTTTGGA
ATTCTCATGTAAGGGCGGTCCTGCGGCTGGTGCCGTCGATGGTGGTCGTG
CAACGACTGGTTGTCCTGCTGCTTCTGCTGCTAACCCCCTTTGTCCTTCT
TCACTTGCGCCTGTGCTCGTTTTGGTGCTGTCAATTTGTGATGCAGGGTG
GGGAACGGCAAAGTTTTCCTCTCCATTGTCCCTTGACGACGGCGAAGGTC
CAATCGGACTGCCAGCCACCACCTGTATACCGCCTCCCTGGCCCCGCTTG
CGCAGATCAATTCGCTTGGCCTTGGCATCGGCAGCAGCTTCCGCTTCTTC
CATCGTCACTTGCCGGGGCCGTTTGACTGACAAATCTCCTGCCGGCTGCT
GCGCGAAAGTCTTGCTGGTCTTGCTGACAGTCGCGGCCGCTGTTGCTCCT
GTCATATCCGCTGGGACTGCTGCTGCTAGTGATGCCGTCACTGGCGCGGT
CACTGCAGCAGCTGCCGCCGATTGTTCTTGATGTCGCCTATATTGACTGA
TATTCGCATATTCAGCCCACTTGTCTGTCACCACTTGGGCCAACTTGGAC
ACGACGGCATGCGCGGCCTGTCCCCCCCTTCC
back to top

Coding sequence (CDS) from alignment at scaffold_10:694752..695633-

>mRNA_4477 ID=mRNA_4477|Name=jgi.p|Nanoce1779_2|589240|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_10:694752..695633- (Nannochloropsis oceanica)
ATGTTCTCAAACGCTTTCTTCACAAATATGAAGACCTCCCGCAGTTCGCC
TTCTCCATGCTGGTCCCTCCACCGCACGGCCTTCTTCTTTTTGGAATTCT
CATGTAAGGGCGGTCCTGCGGCTGGTGCCGTCGATGGTGGTCGTGCAACG
ACTGGTTGTCCTGCTGCTTCTGCTGCTAACCCCCTTTGTCCTTCTTCACT
TGCGCCTGTGCTCGTTTTGGTGCTGTCAATTTGTGATGCAGGGTGGGGAA
CGGCAAAGTTTTCCTCTCCATTGTCCCTTGACGACGGCGAAGGTCCAATC
GGACTGCCAGCCACCACCTGTATACCGCCTCCCTGGCCCCGCTTGCGCAG
ATCAATTCGCTTGGCCTTGGCATCGGCAGCAGCTTCCGCTTCTTCCATCG
TCACTTGCCGGGGCCGTTTGACTGACAAATCTCCTGCCGGCTGCTGCGCG
AAAGTCTTGCTGGTCTTGCTGACAGTCGCGGCCGCTGTTGCTCCTGTCAT
ATCCGCTGGGACTGCTGCTGCTAGTGATGCCGTCACTGGCGCGGTCACTG
CAGCAGCTGCCGCCGATTGTTCTTGA
back to top
Synonyms
Publications