jgi.p|Nanoce1779_2|589237, mRNA_4476 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589237
Unique NamemRNA_4476
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length884
Alignment locationscaffold_10:693847..694730 -

Link to JBrowse

Properties
Property NameValue
TranscriptId589323
TrackFilteredModels2
ProteinId589237
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:693847..694730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589237gene_4476Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589237mRNA_4476-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4476CDS_4476Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4476 ID=mRNA_4476|Name=jgi.p|Nanoce1779_2|589237|organism=Nannochloropsis oceanica|type=mRNA|length=884bp
CCCCGTGTGCCCCGCCGTAGTCCGGAGCATGGTGAGGAAGCGAGCCATGT
TGGCATCTTTGACAGCTTCCAAGTCGACGGGCAGAAGAAACAATGCTTTG
AGCGCGCCTTCCAAGAGTTCATTTGCCGTTGTGACAATTTTGTTTTCTTC
TTCTCCTTTACCCTCCCCTCCCTCGGACTGCTGCTGCAGCAGCTTTAAAC
ACCCGGTCATGACGAGTTTGAGCGCCTCCAATCCCCCCCACCGTACCACC
TTTTCCAGCACTAGTCCGCATTTCCGCTTCTTCTTGAGGGCCAAACCTGT
CCGGCGCAGAACGAGGATCAACATGGCTTGCTCCTTCCACGCATGGCGCA
CTGCCGCCTTGATCAAGAGCTGCACAAAAGGTTGTGCTACCGCGGTCGAG
TTCTTCAAACAGCCTTCCTTATCTAGGTGGGAGAGCAGGGCCGTATTGGA
GGCTTCTAGTTGCCTTGTCTCTTCCTGCTCATCAAGCTGTGATTCCACTT
GTCGGAGAAGGTACTCCTTGCTCGTGGGTGCCGGCAGGCGAGACGAGTCA
AGGTGGTACTGAACGCTCAAGAGACGGTGGTATACGGCCGTTTGGGCCTG
GTATACCTTGTAATGGCCCTGAACAAGCTTGATTTCCGCTGCCATGATCG
CTGCTTGGCCTGACCAAGCAAGACCGTACTCCTCCCCCTGGGCGACCAAG
GTCCGGCCCCTCCTTTTTTGGCTACCGTCCTCCCTGTAACATGTCAATTC
TGTAGAATGGTCGGTCATCACGCCGCAATAAGTGGTTATAGAGAGGCGAA
AGCCAGAAAATGTTTGGTGCCACACTGTGGCACATCGTGTTCGCCGACAA
GCACGCAAGCTCTCAGGTGCACGACCCGACTTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|589237

>mRNA_4476-protein ID=mRNA_4476-protein|Name=jgi.p|Nanoce1779_2|589237|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MVRKRAMLASLTASKSTGRRNNALSAPSKSSFAVVTILFSSSPLPSPPSD
CCCSSFKHPVMTSLSASNPPHRTTFSSTSPHFRFFLRAKPVRRRTRINMA
CSFHAWRTAALIKSCTKGCATAVEFFKQPSLSRWESRAVLEASSCLVSSC
SSSCDSTCRRRYSLLVGAGRRDESRWY*
back to top

mRNA from alignment at scaffold_10:693847..694730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4476 ID=mRNA_4476|Name=jgi.p|Nanoce1779_2|589237|organism=Nannochloropsis oceanica|type=mRNA|length=884bp|location=Sequence derived from alignment at scaffold_10:693847..694730- (Nannochloropsis oceanica)
CCCCGTGTGCCCCGCCGTAGTCCGGAGCATGGTGAGGAAGCGAGCCATGT
TGGCATCTTTGACAGCTTCCAAGTCGACGGGCAGAAGAAACAATGCTTTG
AGCGCGCCTTCCAAGAGTTCATTTGCCGTTGTGACAATTTTGTTTTCTTC
TTCTCCTTTACCCTCCCCTCCCTCGGACTGCTGCTGCAGCAGCTTTAAAC
ACCCGGTCATGACGAGTTTGAGCGCCTCCAATCCCCCCCACCGTACCACC
TTTTCCAGCACTAGTCCGCATTTCCGCTTCTTCTTGAGGGCCAAACCTGT
CCGGCGCAGAACGAGGATCAACATGGCTTGCTCCTTCCACGCATGGCGCA
CTGCCGCCTTGATCAAGAGCTGCACAAAAGGTTGTGCTACCGCGGTCGAG
TTCTTCAAACAGCCTTCCTTATCTAGGTGGGAGAGCAGGGCCGTATTGGA
GGCTTCTAGTTGCCTTGTCTCTTCCTGCTCATCAAGCTGTGATTCCACTT
GTCGGAGAAGGTACTCCTTGCTCGTGGGTGCCGGCAGGCGAGACGAGTCA
AGGTGGTACTGAACGCTCAAGAGACGGTGGTATACGGCCGTTTGGGCCTG
GTATACCTTGTAATGGCCCTGAACAAGCTTGATTTCCGCTGCCATGATCG
CTGCTTGGCCTGACCAAGCAAGACCGTACTCCTCCCCCTGGGCGACCAAG
GTCCGGCCCCTCCTTTTTTGGCTACCGTCCTCCCTGTAACATGTCAATTC
TGTAGAATGGTCGGTCATCACGCCGCAATAAGTGGTTATAGAGAGGCGAA
AGCCAGAAAATGTTTGGTGCCACACTGTGGCACATCGTGTTCGCCGACAA
GCACGCAAGCTCTCAGGTGCACGACCCGACTTGA
back to top

Coding sequence (CDS) from alignment at scaffold_10:693847..694730-

>mRNA_4476 ID=mRNA_4476|Name=jgi.p|Nanoce1779_2|589237|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_10:693847..694730- (Nannochloropsis oceanica)
ATGGTGAGGAAGCGAGCCATGTTGGCATCTTTGACAGCTTCCAAGTCGAC
GGGCAGAAGAAACAATGCTTTGAGCGCGCCTTCCAAGAGTTCATTTGCCG
TTGTGACAATTTTGTTTTCTTCTTCTCCTTTACCCTCCCCTCCCTCGGAC
TGCTGCTGCAGCAGCTTTAAACACCCGGTCATGACGAGTTTGAGCGCCTC
CAATCCCCCCCACCGTACCACCTTTTCCAGCACTAGTCCGCATTTCCGCT
TCTTCTTGAGGGCCAAACCTGTCCGGCGCAGAACGAGGATCAACATGGCT
TGCTCCTTCCACGCATGGCGCACTGCCGCCTTGATCAAGAGCTGCACAAA
AGGTTGTGCTACCGCGGTCGAGTTCTTCAAACAGCCTTCCTTATCTAGGT
GGGAGAGCAGGGCCGTATTGGAGGCTTCTAGTTGCCTTGTCTCTTCCTGC
TCATCAAGCTGTGATTCCACTTGTCGGAGAAGGTACTCCTTGCTCGTGGG
TGCCGGCAGGCGAGACGAGTCAAGGTGGTACTGA
back to top
Synonyms
Publications