jgi.p|Nanoce1779_2|528120, mRNA_4475 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|528120
Unique Name	mRNA_4475
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1707
Alignment location	scaffold_10:691068..692774 -

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Properties


Property Name	Value
TranscriptId	528206
Track	FilteredModels2
ProteinId	528120

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:691068..692774 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528120	gene_4475	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4475	CDS_4475	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528120	mRNA_4475-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:691068..692774-
coding sequence from alignment at scaffold_10:691068..692774-

mRNA sequence

>mRNA_4475 ID=mRNA_4475|Name=jgi.p|Nanoce1779_2|528120|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
ATGCCTGGAGAGGCCGCGAGACCCCCACCAGGGAGTCCCGAGGCCATTGC
CGCGGCCTACCAGAGCGAGCTAGCACGCATTGAAACTGAGACATTCACAT
CAGCCACTCTGGCCAAGGCGAACTTGAACGCCAACGCCTCCTCATCCTCT
ATCCTCTCCTCGGACGTGACCATCTCCGTTGGCGGTGCCACCAATATCAC
CTTCGATCTCCACCTGCTGGAGGACTTTAAGCACATCTTCGACGACATCC
AGTTGAGCGGTATCAGCCTGGAGAATAACACAAATCTTTTCATCCTCCAG
GTTGCTGCCCCGGTGGTGGCCGCCCTGGCACTCGAGCCCCTCATTTCCCT
CGTCGATACCTACTATATCGGCCACTTTCTAGGCTCTGTCTCCCTCTCAG
CCTACGGCATCTCCGAGCGTGTCTTTGTCTTCAGCCTTTACATTCTTAAT
TTTCTGGCGACGTCCACTACCCCCATTGTCGCAAACCTGCGCGCCCAAGG
GGAAGACGAAGCTGCCCGGGAGCTTGTTGGCCGACTGCTTTTCTTCGCGG
GCATGCTCGGCCTCGCCCTCATCCCCATCCTCCAAACCCTGTCATACCCC
CTGCTCAATCTTTTAGGGGCCCGGCCAGAAAATTACGCCGAAGCCGTCGA
GTACTTTCAGGTCAGAAGCTGGGGTACGCCCGCGCTTATGCTCGTAGCCG
TCTCCAACGGAGCTTTGCGTGGGTACTTGGACACGTCCACCCCCCTCATC
ATTGCCGCCATTGCCTTTGTCGTCGATTATTCCGTGAACCCCGAGTTGGT
CTACCCCGCTGACCCCAAGGGTCTGGGTGCCGCGGGTGCCGCTACGGTCA
TTTCGGAGTGGCTGTCGGCGGGCTTGTTCCTGACTAAGTTCCTGACTATG
AAGCCGCCCATTCTCCTCGTCTTTGACCTTTTTCCCCCTTGGGCCGAGAT
GGCCCCAGTGGTGCAGGCCTCGGCGCAGATCTTTATTCGGACTGTGCTCC
TTCAGGCCCTTCTTGCCACCTCTTGTATAGCTGCTGCTCGCATTGGCCCT
TTGGACATCGCCGCGCACCAAGTCGCCCTCCAATTATGGATCCCTCCTTC
GTTCTTGACCGAGGCCTTCTCGATTGCCGCGCAGGGGCTGGTGGCCGACG
CACTGGGTCGTGGAGACCGGTTGCGGGGGCGGGAGCTCAGTCAGCTTCTA
ATAAAGTGGGGTGTGGCTTTGGGTGGGGTCTTGGCCGTGTTTTACGCGAC
AGCCCAGATCTTGCAGCCGGACGTGCTGCCCCGCTTCTTTACGGAAGATC
AAGGGATTTTGGACAAGGTCCACCCGATTGTGTGGCTGATTGCCATCATG
CAGCCCATCAATGGCTTGGTGAACGTGGGTGGCGGGGTGCTGCAAGGCGC
GCAGGACTTTACCTACCAAGTATTGACCATGGGGCTGAGCGCGCTGTTTG
CGGGATCACTCTTCTTCTTATTGCGGGACGAGGGTTTGACAGCTGTGTGG
GAGACGCTCCTCGCCTTTCAGATCATGCGGGCCATCCTGTTTGCCTACCG
ATTCATAGAGCCACAGGGTCCCTTAAGTATAGTGCAGGAGCCAGGGGTGG
CCAAAGGGGTATTGGCAGGCTCCATGTTCAGGGTTTGGGGCCACGACAAG
AACGTACCAAAGAAAAAGAAAAAGAAGAAGAAGCGGTATTGGTTTAACGA
CTTGTAA

protein sequence of jgi.p|Nanoce1779_2|528120

>mRNA_4475-protein ID=mRNA_4475-protein|Name=jgi.p|Nanoce1779_2|528120|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MPGEAARPPPGSPEAIAAAYQSELARIETETFTSATLAKANLNANASSSS
ILSSDVTISVGGATNITFDLHLLEDFKHIFDDIQLSGISLENNTNLFILQ
VAAPVVAALALEPLISLVDTYYIGHFLGSVSLSAYGISERVFVFSLYILN
FLATSTTPIVANLRAQGEDEAARELVGRLLFFAGMLGLALIPILQTLSYP
LLNLLGARPENYAEAVEYFQVRSWGTPALMLVAVSNGALRGYLDTSTPLI
IAAIAFVVDYSVNPELVYPADPKGLGAAGAATVISEWLSAGLFLTKFLTM
KPPILLVFDLFPPWAEMAPVVQASAQIFIRTVLLQALLATSCIAAARIGP
LDIAAHQVALQLWIPPSFLTEAFSIAAQGLVADALGRGDRLRGRELSQLL
IKWGVALGGVLAVFYATAQILQPDVLPRFFTEDQGILDKVHPIVWLIAIM
QPINGLVNVGGGVLQGAQDFTYQVLTMGLSALFAGSLFFLLRDEGLTAVW
ETLLAFQIMRAILFAYRFIEPQGPLSIVQEPGVAKGVLAGSMFRVWGHDK
NVPKKKKKKKKRYWFNDL*

mRNA from alignment at scaffold_10:691068..692774-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4475 ID=mRNA_4475|Name=jgi.p|Nanoce1779_2|528120|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp|location=Sequence derived from alignment at scaffold_10:691068..692774- (Nannochloropsis oceanica)
ATGCCTGGAGAGGCCGCGAGACCCCCACCAGGGAGTCCCGAGGCCATTGC
CGCGGCCTACCAGAGCGAGCTAGCACGCATTGAAACTGAGACATTCACAT
CAGCCACTCTGGCCAAGGCGAACTTGAACGCCAACGCCTCCTCATCCTCT
ATCCTCTCCTCGGACGTGACCATCTCCGTTGGCGGTGCCACCAATATCAC
CTTCGATCTCCACCTGCTGGAGGACTTTAAGCACATCTTCGACGACATCC
AGTTGAGCGGTATCAGCCTGGAGAATAACACAAATCTTTTCATCCTCCAG
GTTGCTGCCCCGGTGGTGGCCGCCCTGGCACTCGAGCCCCTCATTTCCCT
CGTCGATACCTACTATATCGGCCACTTTCTAGGCTCTGTCTCCCTCTCAG
CCTACGGCATCTCCGAGCGTGTCTTTGTCTTCAGCCTTTACATTCTTAAT
TTTCTGGCGACGTCCACTACCCCCATTGTCGCAAACCTGCGCGCCCAAGG
GGAAGACGAAGCTGCCCGGGAGCTTGTTGGCCGACTGCTTTTCTTCGCGG
GCATGCTCGGCCTCGCCCTCATCCCCATCCTCCAAACCCTGTCATACCCC
CTGCTCAATCTTTTAGGGGCCCGGCCAGAAAATTACGCCGAAGCCGTCGA
GTACTTTCAGGTCAGAAGCTGGGGTACGCCCGCGCTTATGCTCGTAGCCG
TCTCCAACGGAGCTTTGCGTGGGTACTTGGACACGTCCACCCCCCTCATC
ATTGCCGCCATTGCCTTTGTCGTCGATTATTCCGTGAACCCCGAGTTGGT
CTACCCCGCTGACCCCAAGGGTCTGGGTGCCGCGGGTGCCGCTACGGTCA
TTTCGGAGTGGCTGTCGGCGGGCTTGTTCCTGACTAAGTTCCTGACTATG
AAGCCGCCCATTCTCCTCGTCTTTGACCTTTTTCCCCCTTGGGCCGAGAT
GGCCCCAGTGGTGCAGGCCTCGGCGCAGATCTTTATTCGGACTGTGCTCC
TTCAGGCCCTTCTTGCCACCTCTTGTATAGCTGCTGCTCGCATTGGCCCT
TTGGACATCGCCGCGCACCAAGTCGCCCTCCAATTATGGATCCCTCCTTC
GTTCTTGACCGAGGCCTTCTCGATTGCCGCGCAGGGGCTGGTGGCCGACG
CACTGGGTCGTGGAGACCGGTTGCGGGGGCGGGAGCTCAGTCAGCTTCTA
ATAAAGTGGGGTGTGGCTTTGGGTGGGGTCTTGGCCGTGTTTTACGCGAC
AGCCCAGATCTTGCAGCCGGACGTGCTGCCCCGCTTCTTTACGGAAGATC
AAGGGATTTTGGACAAGGTCCACCCGATTGTGTGGCTGATTGCCATCATG
CAGCCCATCAATGGCTTGGTGAACGTGGGTGGCGGGGTGCTGCAAGGCGC
GCAGGACTTTACCTACCAAGTATTGACCATGGGGCTGAGCGCGCTGTTTG
CGGGATCACTCTTCTTCTTATTGCGGGACGAGGGTTTGACAGCTGTGTGG
GAGACGCTCCTCGCCTTTCAGATCATGCGGGCCATCCTGTTTGCCTACCG
ATTCATAGAGCCACAGGGTCCCTTAAGTATAGTGCAGGAGCCAGGGGTGG
CCAAAGGGGTATTGGCAGGCTCCATGTTCAGGGTTTGGGGCCACGACAAG
AACGTACCAAAGAAAAAGAAAAAGAAGAAGAAGCGGTATTGGTTTAACGA
CTTGTAA

Coding sequence (CDS) from alignment at scaffold_10:691068..692774-

>mRNA_4475 ID=mRNA_4475|Name=jgi.p|Nanoce1779_2|528120|organism=Nannochloropsis oceanica|type=CDS|length=1707bp|location=Sequence derived from alignment at scaffold_10:691068..692774- (Nannochloropsis oceanica)
ATGCCTGGAGAGGCCGCGAGACCCCCACCAGGGAGTCCCGAGGCCATTGC
CGCGGCCTACCAGAGCGAGCTAGCACGCATTGAAACTGAGACATTCACAT
CAGCCACTCTGGCCAAGGCGAACTTGAACGCCAACGCCTCCTCATCCTCT
ATCCTCTCCTCGGACGTGACCATCTCCGTTGGCGGTGCCACCAATATCAC
CTTCGATCTCCACCTGCTGGAGGACTTTAAGCACATCTTCGACGACATCC
AGTTGAGCGGTATCAGCCTGGAGAATAACACAAATCTTTTCATCCTCCAG
GTTGCTGCCCCGGTGGTGGCCGCCCTGGCACTCGAGCCCCTCATTTCCCT
CGTCGATACCTACTATATCGGCCACTTTCTAGGCTCTGTCTCCCTCTCAG
CCTACGGCATCTCCGAGCGTGTCTTTGTCTTCAGCCTTTACATTCTTAAT
TTTCTGGCGACGTCCACTACCCCCATTGTCGCAAACCTGCGCGCCCAAGG
GGAAGACGAAGCTGCCCGGGAGCTTGTTGGCCGACTGCTTTTCTTCGCGG
GCATGCTCGGCCTCGCCCTCATCCCCATCCTCCAAACCCTGTCATACCCC
CTGCTCAATCTTTTAGGGGCCCGGCCAGAAAATTACGCCGAAGCCGTCGA
GTACTTTCAGGTCAGAAGCTGGGGTACGCCCGCGCTTATGCTCGTAGCCG
TCTCCAACGGAGCTTTGCGTGGGTACTTGGACACGTCCACCCCCCTCATC
ATTGCCGCCATTGCCTTTGTCGTCGATTATTCCGTGAACCCCGAGTTGGT
CTACCCCGCTGACCCCAAGGGTCTGGGTGCCGCGGGTGCCGCTACGGTCA
TTTCGGAGTGGCTGTCGGCGGGCTTGTTCCTGACTAAGTTCCTGACTATG
AAGCCGCCCATTCTCCTCGTCTTTGACCTTTTTCCCCCTTGGGCCGAGAT
GGCCCCAGTGGTGCAGGCCTCGGCGCAGATCTTTATTCGGACTGTGCTCC
TTCAGGCCCTTCTTGCCACCTCTTGTATAGCTGCTGCTCGCATTGGCCCT
TTGGACATCGCCGCGCACCAAGTCGCCCTCCAATTATGGATCCCTCCTTC
GTTCTTGACCGAGGCCTTCTCGATTGCCGCGCAGGGGCTGGTGGCCGACG
CACTGGGTCGTGGAGACCGGTTGCGGGGGCGGGAGCTCAGTCAGCTTCTA
ATAAAGTGGGGTGTGGCTTTGGGTGGGGTCTTGGCCGTGTTTTACGCGAC
AGCCCAGATCTTGCAGCCGGACGTGCTGCCCCGCTTCTTTACGGAAGATC
AAGGGATTTTGGACAAGGTCCACCCGATTGTGTGGCTGATTGCCATCATG
CAGCCCATCAATGGCTTGGTGAACGTGGGTGGCGGGGTGCTGCAAGGCGC
GCAGGACTTTACCTACCAAGTATTGACCATGGGGCTGAGCGCGCTGTTTG
CGGGATCACTCTTCTTCTTATTGCGGGACGAGGGTTTGACAGCTGTGTGG
GAGACGCTCCTCGCCTTTCAGATCATGCGGGCCATCCTGTTTGCCTACCG
ATTCATAGAGCCACAGGGTCCCTTAAGTATAGTGCAGGAGCCAGGGGTGG
CCAAAGGGGTATTGGCAGGCTCCATGTTCAGGGTTTGGGGCCACGACAAG
AACGTACCAAAGAAAAAGAAAAAGAAGAAGAAGCGGTATTGGTTTAACGA
CTTGTAA

Synonyms

Publications