jgi.p|Nanoce1779_2|589232, mRNA_4474 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589232
Unique Name	mRNA_4474
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3254
Alignment location	scaffold_10:685766..689019 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589318
Track	FilteredModels2
ProteinId	589232

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:685766..689019 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589232	gene_4474	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589232	mRNA_4474-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4474	CDS_4474	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:685766..689019-
coding sequence from alignment at scaffold_10:685766..689019-

mRNA sequence

>mRNA_4474 ID=mRNA_4474|Name=jgi.p|Nanoce1779_2|589232|organism=Nannochloropsis oceanica|type=mRNA|length=3254bp
AGTCACAGTCACAGCTACACCTCTTTGAGTTTCCAGTCATGTACGTCAAG
AAGCGCGACGGCCGCCTGGAGGCAGTGCAGTTCGACAAGATTACGGCCCG
CATCAAGAAGCTGGTGTACGGCCTGGACGCCAACTACGTGGACCCAGTGG
TCATCACCCAAAAGGTGATCAGCGGCGTCTACGACGGCGTCACCACCTCG
GAGCTGGACGAGTTAGCGGCCCAGACGGCAGCCTACTGCTCAACCCAGCA
TCCGGATTTCTCCAAGCTGGCCGCCCGCATCGCTGTGTCGAACTTGCATA
AGAACACGACCAAGATCTTCTCCGAGGCCATCGAGCAGTTCCGCAACTAC
ATGCACCCCAAGAACGGCCAGCCCGCCGCCCTCATCGCCGAGGACGTGTA
TAACATTGTCATGGCTAACAAGGAGCGCATTAATTCGGCAATTATCTATG
ATCGAGACTTCGACTATGACTATTTCGGTTTCAAGACGCTGGAGAAGTCC
TACCTGCTCAAGATGGACGGCATCGTCATGGAGCGACCCCAGCACATGAT
CATGCGCGTAGCCATTGGAATCCATAAGGAGGACGTGGACGCGGCGATTG
AGACCTACAATCTCATGTCCCAGAAGCTCTTCACTCACGCCACGCCTACA
CTCTTCAACGCCGGCACGCCGCGGCCGCAGCTCTCCTCCTGCTTCCTTCT
GACCATGAAGGAGGACTCCATCGACGGTATCTATGACACTCTCAAGCAAT
GTGCGGCCATCTCCAAGTTCGCAGGTGGGATTGGTGTCTCGATCCATAAC
ATCCGGGCGCGTGACTCGTACATCCGTGGCTCAAACGGGACCTCCAACGG
CATCGTGCCCATGCTGCGTGTCTTCAATGACACGGCCCGCTACGTGGACC
AGGGTGGGGGCAAGCGCAAGGGCTCTTTCGCCATCTACCTGGAGCCCTGG
CACGCCGATATCTTCGAGTTCCTGGATCTGCGCAAGAACCACGGCAATGA
GCTGGAGCGGGCCCGCGACTTGTTCTACGCCCTCTGGACGCCTGATCTGT
TCATGCAGCGCGTGGAGAACGACGGCGACTGGTCTCTGTTCTGCCCCAAC
GAGTGCCCTGGCCTGGCGGACGTATGTGGAGAGGAATTTAAGCAGCTGTA
TGAGACGTACGAGAAGAGTGGCAAGGCGCGCAAGGTGATCAAGGCCCAGC
AGCTGTGGTTTGCGGTGTTGGACTCACAGGTGGAGACGGGCACGCCCTAT
ATGCTCTTCAAGGACGCCTGCAATCTCAAGTCGAACCAGCAGAATCTGGG
AGTTATCAAGTCTTCCAACCTGTGCACGGAGATCATCGAGTATACGGCGC
CCGATGAGGTTGCCGTCTGCAACCTTGCCTCTGTCAACCTCTCGGCGTTC
GTGCGGGAAGAACCAACTGGCAGCGGTAAAGCCCCCTCTTATGACCTACA
GCGCCTCTACGAGATCACCAAGGTGGTGACGCGCAACCTCAACCGTGTTA
TCGACATCAACTTTTACCCCGTGGAAGAGGCTAAGCGCTCCAACATGCGG
CATAGGCCCGTCGGCATCGGCGTGCAGGGCTTGGCGGATGCGTTCATCAA
AATGCGCTACCCCTTCGAGTCGGCAGACGCGCTCCAGCTGAATAAGGACG
TCTTCGAGACCATGTACTTCGGCGCCGTCGAAGCCTCCATGGAAATCGCA
ATGAAGGAGGGCCCGTACGAGACCTTCTCCGGTTCGCCCATCAGCAAGGG
CGTCTTCCAGTTCGACATGTGGGGCGTGACCCCCTCCACGCGCTGGGATT
GGGCCGGCCTGCGCGTCAAAGTCCAGGAGCATGGCGTGCGCAATTCCCTG
CTGCTGGCGCCCATGCCCACCGCCTCCACGGCCCAAATCCTGGGCAACAA
CGAGTCCGTGGAGCCCTTCACGTCCAACATGTATTCGCGCCGCGTGCTGG
CGGGCGAATTTACCATCGTCAACAAGTACCTGCTCGGCGACCTGATCGAG
CGCGGCCTTTGGAATGCCGAGGTCCGCAACCAGATCATGGGTAATCGCGG
CTCGGTGCAGAACGTAGCAAGCATCCCCCGTGAGCTCAAAGAGCTATATA
AGACCGTGTGGGAGATCCGGCAGAAGTGCGTCATCGACATGGCGGCCGAC
CGCGGGGCCTACATTTGCCAATCCCAGTCCCTCAATATTCACCTGGCCAA
TCCCACGCCCGCCCAGCTCACCTCCATGCACTTTTATTCCTGGAAGAAGG
GACTCAAGACCGGCATGTACTACCTCCGCACCCGCCCCAAGGCCGACGCC
ATCCAGTTCACGGTCGACAAGAGCCAGCTGGCCCAGTCGGACCTGGCCGG
GGCTGCTGCCAACAAGAATGAGGAAGAAGAGGAGTGCTTGACCTGCAGTG
CGTAATCGCGTTGTTGATCGGGTAGTGATTGGCAGGAAGAGGGGGAGAGT
GCTGCCACCGGCGCTGGAGACTTGAGACTTGAGACGTGTGTCCTTTCTCC
TGTGCATTGTTAGTGCTGACGGGGGAAAACGGAAGAAACGGCTGAAGGGA
AGTGAAGAGTGTATGTGGGAACAGTATATAGACATGCGGCGGCACGAAAA
GAGACTGTATGTCTCCATTTTTGCCATATTCTGATCGGACAAGTCAGTAA
AGATGGAGGTATGCACTAGAGCGACTTAAGACAAGTATGTGGGTGTAGAT
GAGGAAATGAGAAGTGAGAAAAATGAAAGAAGCAGAGTAGTACAAGTACC
CTCGATCGAGGAATGAAAGTGTGGGTGGGATTTGTAAAGTGGCACGATTT
TTCTTGGTAAAGTTTAGGGCTGTGACGTTGCCTGAAAACGAGGCCCGGAG
AGTTGCCCAAAACATGTGTTTTACACAAAAAGGGGAAAGAAAATCGAACA
GGAAGACACGCAAGAAACTTTTGGTGCACAACGACTACATCGACGACCAA
AACGAAGAACTGAACGTGTGAAAATCGACAGGGGAAAAGTATGTTTATTT
GACTTGACTTGTTCCTGTTGCGCAACTCGCTGCAGAAAGGTATAGGGAGG
GAAGGGAGTTTCTCTCCTTGATAACAGACGGTCATGTTAGCATGTTAGCA
TATTAGATAATGTTATATTGGACCATACATCGTCTGTTGAAGCTATCCTA
CAATCCTAGAACTATCGCATTGCAACCTTTACCCGCAAACACGAGTCCGC
CACGTCACAGGATAACATACGAGGGGAAGCCTTCCACCAACAAATTGTTG
CGTA

protein sequence of jgi.p|Nanoce1779_2|589232

>mRNA_4474-protein ID=mRNA_4474-protein|Name=jgi.p|Nanoce1779_2|589232|organism=Nannochloropsis oceanica|type=polypeptide|length=789bp
MYVKKRDGRLEAVQFDKITARIKKLVYGLDANYVDPVVITQKVISGVYDG
VTTSELDELAAQTAAYCSTQHPDFSKLAARIAVSNLHKNTTKIFSEAIEQ
FRNYMHPKNGQPAALIAEDVYNIVMANKERINSAIIYDRDFDYDYFGFKT
LEKSYLLKMDGIVMERPQHMIMRVAIGIHKEDVDAAIETYNLMSQKLFTH
ATPTLFNAGTPRPQLSSCFLLTMKEDSIDGIYDTLKQCAAISKFAGGIGV
SIHNIRARDSYIRGSNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIY
LEPWHADIFEFLDLRKNHGNELERARDLFYALWTPDLFMQRVENDGDWSL
FCPNECPGLADVCGEEFKQLYETYEKSGKARKVIKAQQLWFAVLDSQVET
GTPYMLFKDACNLKSNQQNLGVIKSSNLCTEIIEYTAPDEVAVCNLASVN
LSAFVREEPTGSGKAPSYDLQRLYEITKVVTRNLNRVIDINFYPVEEAKR
SNMRHRPVGIGVQGLADAFIKMRYPFESADALQLNKDVFETMYFGAVEAS
MEIAMKEGPYETFSGSPISKGVFQFDMWGVTPSTRWDWAGLRVKVQEHGV
RNSLLLAPMPTASTAQILGNNESVEPFTSNMYSRRVLAGEFTIVNKYLLG
DLIERGLWNAEVRNQIMGNRGSVQNVASIPRELKELYKTVWEIRQKCVID
MAADRGAYICQSQSLNIHLANPTPAQLTSMHFYSWKKGLKTGMYYLRTRP
KADAIQFTVDKSQLAQSDLAGAAANKNEEEEECLTCSA*

mRNA from alignment at scaffold_10:685766..689019-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4474 ID=mRNA_4474|Name=jgi.p|Nanoce1779_2|589232|organism=Nannochloropsis oceanica|type=mRNA|length=3254bp|location=Sequence derived from alignment at scaffold_10:685766..689019- (Nannochloropsis oceanica)
AGTCACAGTCACAGCTACACCTCTTTGAGTTTCCAGTCATGTACGTCAAG
AAGCGCGACGGCCGCCTGGAGGCAGTGCAGTTCGACAAGATTACGGCCCG
CATCAAGAAGCTGGTGTACGGCCTGGACGCCAACTACGTGGACCCAGTGG
TCATCACCCAAAAGGTGATCAGCGGCGTCTACGACGGCGTCACCACCTCG
GAGCTGGACGAGTTAGCGGCCCAGACGGCAGCCTACTGCTCAACCCAGCA
TCCGGATTTCTCCAAGCTGGCCGCCCGCATCGCTGTGTCGAACTTGCATA
AGAACACGACCAAGATCTTCTCCGAGGCCATCGAGCAGTTCCGCAACTAC
ATGCACCCCAAGAACGGCCAGCCCGCCGCCCTCATCGCCGAGGACGTGTA
TAACATTGTCATGGCTAACAAGGAGCGCATTAATTCGGCAATTATCTATG
ATCGAGACTTCGACTATGACTATTTCGGTTTCAAGACGCTGGAGAAGTCC
TACCTGCTCAAGATGGACGGCATCGTCATGGAGCGACCCCAGCACATGAT
CATGCGCGTAGCCATTGGAATCCATAAGGAGGACGTGGACGCGGCGATTG
AGACCTACAATCTCATGTCCCAGAAGCTCTTCACTCACGCCACGCCTACA
CTCTTCAACGCCGGCACGCCGCGGCCGCAGCTCTCCTCCTGCTTCCTTCT
GACCATGAAGGAGGACTCCATCGACGGTATCTATGACACTCTCAAGCAAT
GTGCGGCCATCTCCAAGTTCGCAGGTGGGATTGGTGTCTCGATCCATAAC
ATCCGGGCGCGTGACTCGTACATCCGTGGCTCAAACGGGACCTCCAACGG
CATCGTGCCCATGCTGCGTGTCTTCAATGACACGGCCCGCTACGTGGACC
AGGGTGGGGGCAAGCGCAAGGGCTCTTTCGCCATCTACCTGGAGCCCTGG
CACGCCGATATCTTCGAGTTCCTGGATCTGCGCAAGAACCACGGCAATGA
GCTGGAGCGGGCCCGCGACTTGTTCTACGCCCTCTGGACGCCTGATCTGT
TCATGCAGCGCGTGGAGAACGACGGCGACTGGTCTCTGTTCTGCCCCAAC
GAGTGCCCTGGCCTGGCGGACGTATGTGGAGAGGAATTTAAGCAGCTGTA
TGAGACGTACGAGAAGAGTGGCAAGGCGCGCAAGGTGATCAAGGCCCAGC
AGCTGTGGTTTGCGGTGTTGGACTCACAGGTGGAGACGGGCACGCCCTAT
ATGCTCTTCAAGGACGCCTGCAATCTCAAGTCGAACCAGCAGAATCTGGG
AGTTATCAAGTCTTCCAACCTGTGCACGGAGATCATCGAGTATACGGCGC
CCGATGAGGTTGCCGTCTGCAACCTTGCCTCTGTCAACCTCTCGGCGTTC
GTGCGGGAAGAACCAACTGGCAGCGGTAAAGCCCCCTCTTATGACCTACA
GCGCCTCTACGAGATCACCAAGGTGGTGACGCGCAACCTCAACCGTGTTA
TCGACATCAACTTTTACCCCGTGGAAGAGGCTAAGCGCTCCAACATGCGG
CATAGGCCCGTCGGCATCGGCGTGCAGGGCTTGGCGGATGCGTTCATCAA
AATGCGCTACCCCTTCGAGTCGGCAGACGCGCTCCAGCTGAATAAGGACG
TCTTCGAGACCATGTACTTCGGCGCCGTCGAAGCCTCCATGGAAATCGCA
ATGAAGGAGGGCCCGTACGAGACCTTCTCCGGTTCGCCCATCAGCAAGGG
CGTCTTCCAGTTCGACATGTGGGGCGTGACCCCCTCCACGCGCTGGGATT
GGGCCGGCCTGCGCGTCAAAGTCCAGGAGCATGGCGTGCGCAATTCCCTG
CTGCTGGCGCCCATGCCCACCGCCTCCACGGCCCAAATCCTGGGCAACAA
CGAGTCCGTGGAGCCCTTCACGTCCAACATGTATTCGCGCCGCGTGCTGG
CGGGCGAATTTACCATCGTCAACAAGTACCTGCTCGGCGACCTGATCGAG
CGCGGCCTTTGGAATGCCGAGGTCCGCAACCAGATCATGGGTAATCGCGG
CTCGGTGCAGAACGTAGCAAGCATCCCCCGTGAGCTCAAAGAGCTATATA
AGACCGTGTGGGAGATCCGGCAGAAGTGCGTCATCGACATGGCGGCCGAC
CGCGGGGCCTACATTTGCCAATCCCAGTCCCTCAATATTCACCTGGCCAA
TCCCACGCCCGCCCAGCTCACCTCCATGCACTTTTATTCCTGGAAGAAGG
GACTCAAGACCGGCATGTACTACCTCCGCACCCGCCCCAAGGCCGACGCC
ATCCAGTTCACGGTCGACAAGAGCCAGCTGGCCCAGTCGGACCTGGCCGG
GGCTGCTGCCAACAAGAATGAGGAAGAAGAGGAGTGCTTGACCTGCAGTG
CGTAATCGCGTTGTTGATCGGGTAGTGATTGGCAGGAAGAGGGGGAGAGT
GCTGCCACCGGCGCTGGAGACTTGAGACTTGAGACGTGTGTCCTTTCTCC
TGTGCATTGTTAGTGCTGACGGGGGAAAACGGAAGAAACGGCTGAAGGGA
AGTGAAGAGTGTATGTGGGAACAGTATATAGACATGCGGCGGCACGAAAA
GAGACTGTATGTCTCCATTTTTGCCATATTCTGATCGGACAAGTCAGTAA
AGATGGAGGTATGCACTAGAGCGACTTAAGACAAGTATGTGGGTGTAGAT
GAGGAAATGAGAAGTGAGAAAAATGAAAGAAGCAGAGTAGTACAAGTACC
CTCGATCGAGGAATGAAAGTGTGGGTGGGATTTGTAAAGTGGCACGATTT
TTCTTGGTAAAGTTTAGGGCTGTGACGTTGCCTGAAAACGAGGCCCGGAG
AGTTGCCCAAAACATGTGTTTTACACAAAAAGGGGAAAGAAAATCGAACA
GGAAGACACGCAAGAAACTTTTGGTGCACAACGACTACATCGACGACCAA
AACGAAGAACTGAACGTGTGAAAATCGACAGGGGAAAAGTATGTTTATTT
GACTTGACTTGTTCCTGTTGCGCAACTCGCTGCAGAAAGGTATAGGGAGG
GAAGGGAGTTTCTCTCCTTGATAACAGACGGTCATGTTAGCATGTTAGCA
TATTAGATAATGTTATATTGGACCATACATCGTCTGTTGAAGCTATCCTA
CAATCCTAGAACTATCGCATTGCAACCTTTACCCGCAAACACGAGTCCGC
CACGTCACAGGATAACATACGAGGGGAAGCCTTCCACCAACAAATTGTTG
CGTA

Coding sequence (CDS) from alignment at scaffold_10:685766..689019-

>mRNA_4474 ID=mRNA_4474|Name=jgi.p|Nanoce1779_2|589232|organism=Nannochloropsis oceanica|type=CDS|length=2367bp|location=Sequence derived from alignment at scaffold_10:685766..689019- (Nannochloropsis oceanica)
ATGTACGTCAAGAAGCGCGACGGCCGCCTGGAGGCAGTGCAGTTCGACAA
GATTACGGCCCGCATCAAGAAGCTGGTGTACGGCCTGGACGCCAACTACG
TGGACCCAGTGGTCATCACCCAAAAGGTGATCAGCGGCGTCTACGACGGC
GTCACCACCTCGGAGCTGGACGAGTTAGCGGCCCAGACGGCAGCCTACTG
CTCAACCCAGCATCCGGATTTCTCCAAGCTGGCCGCCCGCATCGCTGTGT
CGAACTTGCATAAGAACACGACCAAGATCTTCTCCGAGGCCATCGAGCAG
TTCCGCAACTACATGCACCCCAAGAACGGCCAGCCCGCCGCCCTCATCGC
CGAGGACGTGTATAACATTGTCATGGCTAACAAGGAGCGCATTAATTCGG
CAATTATCTATGATCGAGACTTCGACTATGACTATTTCGGTTTCAAGACG
CTGGAGAAGTCCTACCTGCTCAAGATGGACGGCATCGTCATGGAGCGACC
CCAGCACATGATCATGCGCGTAGCCATTGGAATCCATAAGGAGGACGTGG
ACGCGGCGATTGAGACCTACAATCTCATGTCCCAGAAGCTCTTCACTCAC
GCCACGCCTACACTCTTCAACGCCGGCACGCCGCGGCCGCAGCTCTCCTC
CTGCTTCCTTCTGACCATGAAGGAGGACTCCATCGACGGTATCTATGACA
CTCTCAAGCAATGTGCGGCCATCTCCAAGTTCGCAGGTGGGATTGGTGTC
TCGATCCATAACATCCGGGCGCGTGACTCGTACATCCGTGGCTCAAACGG
GACCTCCAACGGCATCGTGCCCATGCTGCGTGTCTTCAATGACACGGCCC
GCTACGTGGACCAGGGTGGGGGCAAGCGCAAGGGCTCTTTCGCCATCTAC
CTGGAGCCCTGGCACGCCGATATCTTCGAGTTCCTGGATCTGCGCAAGAA
CCACGGCAATGAGCTGGAGCGGGCCCGCGACTTGTTCTACGCCCTCTGGA
CGCCTGATCTGTTCATGCAGCGCGTGGAGAACGACGGCGACTGGTCTCTG
TTCTGCCCCAACGAGTGCCCTGGCCTGGCGGACGTATGTGGAGAGGAATT
TAAGCAGCTGTATGAGACGTACGAGAAGAGTGGCAAGGCGCGCAAGGTGA
TCAAGGCCCAGCAGCTGTGGTTTGCGGTGTTGGACTCACAGGTGGAGACG
GGCACGCCCTATATGCTCTTCAAGGACGCCTGCAATCTCAAGTCGAACCA
GCAGAATCTGGGAGTTATCAAGTCTTCCAACCTGTGCACGGAGATCATCG
AGTATACGGCGCCCGATGAGGTTGCCGTCTGCAACCTTGCCTCTGTCAAC
CTCTCGGCGTTCGTGCGGGAAGAACCAACTGGCAGCGGTAAAGCCCCCTC
TTATGACCTACAGCGCCTCTACGAGATCACCAAGGTGGTGACGCGCAACC
TCAACCGTGTTATCGACATCAACTTTTACCCCGTGGAAGAGGCTAAGCGC
TCCAACATGCGGCATAGGCCCGTCGGCATCGGCGTGCAGGGCTTGGCGGA
TGCGTTCATCAAAATGCGCTACCCCTTCGAGTCGGCAGACGCGCTCCAGC
TGAATAAGGACGTCTTCGAGACCATGTACTTCGGCGCCGTCGAAGCCTCC
ATGGAAATCGCAATGAAGGAGGGCCCGTACGAGACCTTCTCCGGTTCGCC
CATCAGCAAGGGCGTCTTCCAGTTCGACATGTGGGGCGTGACCCCCTCCA
CGCGCTGGGATTGGGCCGGCCTGCGCGTCAAAGTCCAGGAGCATGGCGTG
CGCAATTCCCTGCTGCTGGCGCCCATGCCCACCGCCTCCACGGCCCAAAT
CCTGGGCAACAACGAGTCCGTGGAGCCCTTCACGTCCAACATGTATTCGC
GCCGCGTGCTGGCGGGCGAATTTACCATCGTCAACAAGTACCTGCTCGGC
GACCTGATCGAGCGCGGCCTTTGGAATGCCGAGGTCCGCAACCAGATCAT
GGGTAATCGCGGCTCGGTGCAGAACGTAGCAAGCATCCCCCGTGAGCTCA
AAGAGCTATATAAGACCGTGTGGGAGATCCGGCAGAAGTGCGTCATCGAC
ATGGCGGCCGACCGCGGGGCCTACATTTGCCAATCCCAGTCCCTCAATAT
TCACCTGGCCAATCCCACGCCCGCCCAGCTCACCTCCATGCACTTTTATT
CCTGGAAGAAGGGACTCAAGACCGGCATGTACTACCTCCGCACCCGCCCC
AAGGCCGACGCCATCCAGTTCACGGTCGACAAGAGCCAGCTGGCCCAGTC
GGACCTGGCCGGGGCTGCTGCCAACAAGAATGAGGAAGAAGAGGAGTGCT
TGACCTGCAGTGCGTAA

Synonyms

Publications