jgi.p|Nanoce1779_2|24845, mRNA_4473 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|24845
Unique NamemRNA_4473
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1269
Alignment locationscaffold_10:684234..685586 -

Link to JBrowse

Properties
Property NameValue
TranscriptId24931
TrackFilteredModels2
ProteinId24845
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:684234..685586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|24845gene_4473Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|24845mRNA_4473-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4473CDS_4473Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4473 ID=mRNA_4473|Name=jgi.p|Nanoce1779_2|24845|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
TCTGTATGTCTACAGCTAATCCGGTGGACCGGACACACTAAAGTACGAAT
GACACACTGTGGTATGACAAGCCTGAACCCAAAGCCATCGTTGGCGCATG
CCGAGGCACTTATTCGGCAAGCACTTCGCCACCAAAATCACCACACCAAT
GCCTGACAATATAATGCACCCCTTACAGTGTCTACAGACGTCAAACTGCA
ATGACCTGTGTAACATAAGCAGGAAATCGCTCCCTAGGACCAATCATCTT
CCTTGGGTGGGTCCAACCAGTGAAGCGAATTTGCAAGGCGTTCGTTATTC
GGCCTACAGGGCCTTGGCGGCACAGGCCCCTGGTGGTGGCTTCACTCATG
TCCTCGCAGCCGCCTGCACCTCCCTCCTCCCTATCAGAGTCTACGCATCC
GTCCGGTCCCATTTTCACTGAGGAAGCCGCGGCATGGGGGATCAGATCTG
ACGCCTTGATCAGTATCCGGCATCAGCGTTTGGTACGGCACGTCAAAGCC
GTGTCGGGGGACCATCGCAGGCAAGTAGCTGCCTATTGCCGTCTGTACGA
GGCGGGCGAAAGCATCCATAAAATTGCGTGCCGAGTACGGTACCCGCCCT
ACTTACTGGCGCGAATGCTCGTAGAAGAATTGTGCCAAGTTGGATCACGG
CAAAAAGTCACGGAATTGATGCGGGCACCGCACCTTATTGTCAACCTGCG
TTTGCGCCGGGAAGTTACGCAGTGCATCGAGTTGGACGAGGACTTTTCTC
CCGGTGCTGATCGGGTGGCACGAAGCATTGGTGCGGATTATGAGCGAGAG
CTTTGCTTACGGTTACGTGCCTTGGCCGTGCCATTTGAAGACGAAGACAC
TCTGCGGGCGCGGGGCCTGCCCAAGACGCCGGACGTCCGGTTGCTGGTTC
CTCTGGGCCTTGTAGACGCTGACGGGAAGCAGCACCTCGTGAATTGGATC
GACAGCAAGGCCATGTACGGTACGCGGGAGACGTATTTGACAGAAGTCCT
GCCGCAAGTCACGCGGTATGTAAACCGCTTTGGGCCTGGATGTATAGTAT
TCTGGTACGGATTTTGCCCGAGCATTCGCGAGCTGCCCGCGACACACACA
CACCACGTCGCACTGCTCGACGATTTTCCGCCGCGAGAAGGGCAGCTGGT
GTTCTTGAATAGAGGGGGCTTGGGTAGATGAGATTTAGCATAGTTAGAAT
TATGGGGAATTGCCAAATGTGTATCGAAAAAGCGTGAAAATGCAAAGAAC
GTAAGGATACTGCCCCGAA
back to top

protein sequence of jgi.p|Nanoce1779_2|24845

>mRNA_4473-protein ID=mRNA_4473-protein|Name=jgi.p|Nanoce1779_2|24845|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MSSQPPAPPSSLSESTHPSGPIFTEEAAAWGIRSDALISIRHQRLVRHVK
AVSGDHRRQVAAYCRLYEAGESIHKIACRVRYPPYLLARMLVEELCQVGS
RQKVTELMRAPHLIVNLRLRREVTQCIELDEDFSPGADRVARSIGADYER
ELCLRLRALAVPFEDEDTLRARGLPKTPDVRLLVPLGLVDADGKQHLVNW
IDSKAMYGTRETYLTEVLPQVTRYVNRFGPGCIVFWYGFCPSIRELPATH
THHVALLDDFPPREGQLVFLNRGGLGR*
back to top

mRNA from alignment at scaffold_10:684234..685586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4473 ID=mRNA_4473|Name=jgi.p|Nanoce1779_2|24845|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp|location=Sequence derived from alignment at scaffold_10:684234..685586- (Nannochloropsis oceanica)
TCTGTATGTCTACAGCTAATCCGGTGGACCGGACACACTAAAGTACGAAT
GACACACTGTGGTATGACAAGCCTGAACCCAAAGCCATCGTTGGCGCATG
CCGAGGCACTTATTCGGCAAGCACTTCGCCACCAAAATCACCACACCAAT
GCCTGACAATATAATGCACCCCTTACAGTGTCTACAGACGTCAAACTGCA
ATGACCTGTGTAACATAAGCAGGAAATCGCTCCCTAGGACCAATCATCTT
CCTTGGGTGGGTCCAACCAGTGAAGCGAATTTGCAAGGCGTTCGTTGTGA
GTGCCGTCTCGCTACACTCACTGCCTTGTCCACGCGTGCGCTAGATACTG
TTTCATAACTTAGTCCTTTCCCTCCCTCAGATTCGGCCTACAGGGCCTTG
GCGGCACAGGCCCCTGGTGGTGGCTTCACTCATGTCCTCGCAGCCGCCTG
CACCTCCCTCCTCCCTATCAGAGTCTACGCATCCGTCCGGTCCCATTTTC
ACTGAGGAAGCCGCGGCATGGGGGATCAGATCTGACGCCTTGATCAGTAT
CCGGCATCAGCGTTTGGTACGGCACGTCAAAGCCGTGTCGGGGGACCATC
GCAGGCAAGTAGCTGCCTATTGCCGTCTGTACGAGGCGGGCGAAAGCATC
CATAAAATTGCGTGCCGAGTACGGTACCCGCCCTACTTACTGGCGCGAAT
GCTCGTAGAAGAATTGTGCCAAGTTGGATCACGGCAAAAAGTCACGGAAT
TGATGCGGGCACCGCACCTTATTGTCAACCTGCGTTTGCGCCGGGAAGTT
ACGCAGTGCATCGAGTTGGACGAGGACTTTTCTCCCGGTGCTGATCGGGT
GGCACGAAGCATTGGTGCGGATTATGAGCGAGAGCTTTGCTTACGGTTAC
GTGCCTTGGCCGTGCCATTTGAAGACGAAGACACTCTGCGGGCGCGGGGC
CTGCCCAAGACGCCGGACGTCCGGTTGCTGGTTCCTCTGGGCCTTGTAGA
CGCTGACGGGAAGCAGCACCTCGTGAATTGGATCGACAGCAAGGCCATGT
ACGGTACGCGGGAGACGTATTTGACAGAAGTCCTGCCGCAAGTCACGCGG
TATGTAAACCGCTTTGGGCCTGGATGTATAGTATTCTGGTACGGATTTTG
CCCGAGCATTCGCGAGCTGCCCGCGACACACACACACCACGTCGCACTGC
TCGACGATTTTCCGCCGCGAGAAGGGCAGCTGGTGTTCTTGAATAGAGGG
GGCTTGGGTAGATGAGATTTAGCATAGTTAGAATTATGGGGAATTGCCAA
ATGTGTATCGAAAAAGCGTGAAAATGCAAAGAACGTAAGGATACTGCCCC
GAA
back to top

Coding sequence (CDS) from alignment at scaffold_10:684234..685586-

>mRNA_4473 ID=mRNA_4473|Name=jgi.p|Nanoce1779_2|24845|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_10:684234..685586- (Nannochloropsis oceanica)
ATGTCCTCGCAGCCGCCTGCACCTCCCTCCTCCCTATCAGAGTCTACGCA
TCCGTCCGGTCCCATTTTCACTGAGGAAGCCGCGGCATGGGGGATCAGAT
CTGACGCCTTGATCAGTATCCGGCATCAGCGTTTGGTACGGCACGTCAAA
GCCGTGTCGGGGGACCATCGCAGGCAAGTAGCTGCCTATTGCCGTCTGTA
CGAGGCGGGCGAAAGCATCCATAAAATTGCGTGCCGAGTACGGTACCCGC
CCTACTTACTGGCGCGAATGCTCGTAGAAGAATTGTGCCAAGTTGGATCA
CGGCAAAAAGTCACGGAATTGATGCGGGCACCGCACCTTATTGTCAACCT
GCGTTTGCGCCGGGAAGTTACGCAGTGCATCGAGTTGGACGAGGACTTTT
CTCCCGGTGCTGATCGGGTGGCACGAAGCATTGGTGCGGATTATGAGCGA
GAGCTTTGCTTACGGTTACGTGCCTTGGCCGTGCCATTTGAAGACGAAGA
CACTCTGCGGGCGCGGGGCCTGCCCAAGACGCCGGACGTCCGGTTGCTGG
TTCCTCTGGGCCTTGTAGACGCTGACGGGAAGCAGCACCTCGTGAATTGG
ATCGACAGCAAGGCCATGTACGGTACGCGGGAGACGTATTTGACAGAAGT
CCTGCCGCAAGTCACGCGGTATGTAAACCGCTTTGGGCCTGGATGTATAG
TATTCTGGTACGGATTTTGCCCGAGCATTCGCGAGCTGCCCGCGACACAC
ACACACCACGTCGCACTGCTCGACGATTTTCCGCCGCGAGAAGGGCAGCT
GGTGTTCTTGAATAGAGGGGGCTTGGGTAGATGA
back to top
Synonyms
Publications