jgi.p|Nanoce1779_2|528270, mRNA_4472 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|528270
Unique Name	mRNA_4472
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1896
Alignment location	scaffold_10:681250..683661 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	528356
Track	FilteredModels2
ProteinId	528270

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:681250..683661 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528270	gene_4472	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|528270	mRNA_4472-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4472	CDS_4472	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:681250..683661+
coding sequence from alignment at scaffold_10:681250..683661+

mRNA sequence

>mRNA_4472 ID=mRNA_4472|Name=jgi.p|Nanoce1779_2|528270|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp
ATGGAGTGGCGAACTAAGCCTGCGGCCGGGTCTCTCTCTCATCAAAGCGT
TGACCCGAGTAATATGATATGTTCCTTGGATCCCAAGATCACTCCTGATT
CTCTGCAGGACTTCATCGCTGACGTCGGAGGCATGTGGGGCTCGGCGTGC
GGCCGCAATCGCGGAGTTTTTATCCTTGATCCGGCGGACGGAAAGACGTA
TGACTGCGGAAACTTTCCCGATAGCTGGTCGGTTTCAAATGCAGGGTCTC
TTCTGTCTGCAGAGCCTGAAAAAGCTGTCGCGGCCCTAGCGAACTACATC
TCGGCAGTGTACAACAGCACCATCGTCAAGGGCGTAGCCGCCTGCGATTT
TAATGGACTTGCGTACCTGACATGCGGACGGGAGGAGCCTTGGAAGAGAG
TTCCCTGGTACAGCAAGATCAAGAACCCCATCCGGGCCGTAAACATCGGC
GGCCTGTTTGTGCTGGAGCAGTGGATTTTGCCCGGCTTCGTGAAGTGGGG
CGAGGAGACTGGCATCTGGGACCAGTACTCTTACTCGTCCAAGTGTGCCA
AGATGGGCACTTGCGACAATCTCAAGAAGCACTGGAAGGAGTGGTACACT
GCCGCTGACTTTGATGCGGGCCTGCAAGTCATCCTGGACCTGCACGGGGC
ACCGCTTAGTCAGAATGGTCTGGACAATTCGGGCAAAATGAGCGACGACC
CAGACGTGCACAGGTGGGGCGAGACCTGGCTGTACAACGAGGCCGCCATC
AGCGAGACGGTCCAGGTCCTGGAGGGCATGGCATTGTATATTAAGTACCT
GTCGGAGGAGCTGCGCCTGGACAACATCATGATGCTGGAGCTGGTGAATG
AGCCGTGGGTATTTTTGGACATGGGCATGGTCCGCGATTTCTATATCCTT
GCCATCTCCTCCGTGCGCGCCGTGCTGCCCCAGTTGCCCATCCTGCTGCA
CGATTCCTTCCACGGCGACATGTGGGCGATGATGCTCAAGTACTTTCCCT
TTGACAACGTCTTCATGGACACGCACCTGTACCACGGCTTCAACCCCTCC
GACATCGCCTCCGACACCTACGAGGCCGACAAGCTCAAAATGTACGTGCA
TGAGCGCATGGCCTGCGCCATGACCTCCATGCTGCGCTACGAGACCTGCT
CGGCCGCCCCCACGATTACGGGTGAGTTCTCTCTGGCCATCGATAATTGC
ATGGACGCCATCGACCGCAAGTTCCAAAACTACGGCCAGTGCGACCACAT
TGCTCTGCGCAAGACGGACCCCTGGTGGAAGGACCACATTCGCTCCTTCG
CGCACCGGCAGATGGATGTCTACGAACGCGAGTTAGGCTGGGCCTTCTGG
ACCTACAAGCTGGATGAGCACGCCGAGACCACAGCCGAATCGGCACCGCT
CTGGAGCTTCCGGCTGGCGGTCAAGGAGGGCTACATTGATACCACCTACC
CTCCTCACGCCTGCAAGTATGACCCCATTGCGGACTATCAGGGAGGAGCG
TCCACGCCCGGTGATAAACCGGCAACCGACACTTCCATTGATAAGGCTAA
CTCTGTGGCCGCTAAGCCCGAGTTGATGGTTGTGGAGCGCACGGAGGTTG
CGGAGTCTGAGCCCGCGGACGTTGTGCTTCCCTCGTCCCGCCACGAAACG
CCAGAGACTGGAATGCCCTCTTCCTCATCTGACCTTACGGGCATCCTGTC
GGCCTTGGCTGGCGTGGTGGCTATTCTGGGGGTTATCGTGCTTGTAACGC
AAAACTACGCAAGCGGTCGCCGGCCATTAGCCAATATCATCACCTCTTTT
CCGGCGGCCGTGCAGAACTTGCTGCCCCATGCTTTGACTCGGGGGCATTA
CGACGCGGTGTCTGATCCCAGCATCTCGGCCACCGCGCAAGTTTAG

protein sequence of jgi.p|Nanoce1779_2|528270

>mRNA_4472-protein ID=mRNA_4472-protein|Name=jgi.p|Nanoce1779_2|528270|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MEWRTKPAAGSLSHQSVDPSNMICSLDPKITPDSLQDFIADVGGMWGSAC
GRNRGVFILDPADGKTYDCGNFPDSWSVSNAGSLLSAEPEKAVAALANYI
SAVYNSTIVKGVAACDFNGLAYLTCGREEPWKRVPWYSKIKNPIRAVNIG
GLFVLEQWILPGFVKWGEETGIWDQYSYSSKCAKMGTCDNLKKHWKEWYT
AADFDAGLQVILDLHGAPLSQNGLDNSGKMSDDPDVHRWGETWLYNEAAI
SETVQVLEGMALYIKYLSEELRLDNIMMLELVNEPWVFLDMGMVRDFYIL
AISSVRAVLPQLPILLHDSFHGDMWAMMLKYFPFDNVFMDTHLYHGFNPS
DIASDTYEADKLKMYVHERMACAMTSMLRYETCSAAPTITGEFSLAIDNC
MDAIDRKFQNYGQCDHIALRKTDPWWKDHIRSFAHRQMDVYERELGWAFW
TYKLDEHAETTAESAPLWSFRLAVKEGYIDTTYPPHACKYDPIADYQGGA
STPGDKPATDTSIDKANSVAAKPELMVVERTEVAESEPADVVLPSSRHET
PETGMPSSSSDLTGILSALAGVVAILGVIVLVTQNYASGRRPLANIITSF
PAAVQNLLPHALTRGHYDAVSDPSISATAQV*

mRNA from alignment at scaffold_10:681250..683661+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4472 ID=mRNA_4472|Name=jgi.p|Nanoce1779_2|528270|organism=Nannochloropsis oceanica|type=mRNA|length=2412bp|location=Sequence derived from alignment at scaffold_10:681250..683661+ (Nannochloropsis oceanica)
ATGGAGTGGCGAACTAAGCCTGCGGCCGGGTCTCTCTCTCATCAAAGCGT
TGACCCGAGTAATATGATATGTTCCTTGGATCCCAAGATCACTCCTGATT
CTCTGCAGGACTTCATCGCTGACGTCGGAGGCATGTGGGGCTCGGCGTGC
GGCCGCAATCGCGGAGTTTTTATCCTTGATCCGGCGGACGGAAAGACGTA
TGACTGCGGAAACTTTCCCGATAGCTGGTCGGTTTCAAATGCAGGGTCTC
TTCTGTCTGCAGAGCCTGAAAAAGCTGTCGCGGCCCTAGCGAACTACATC
TCGGCAGTGTACAACAGCACCATCGTCAAGGGCGTAGCCGCCTGCGATTT
TAATGGACTTGCGTACCTGACATGCGGACGGGAGGAGCCTTGGAAGAGAG
TTCCCTGGTACAGCAAGATCAAGAACCCCATCCGGGCCGTAAACATCGGC
GGCCTGTTTGTGCTGGAGCAGTGGATTTTGCCCGGCTTCGTGAAGTGGGG
CGAGGAGACTGGCATCTGGGACCAGTACTCTTACTCGTCCAAGTGTGCCA
AGATGGGCACTTGCGACAATCTCAAGAAGCACTGGAAGGAGTGGTACACT
GCCGCTGACTTTGTGCAAATGAAGCAGTAAGTATCTCTACTGGCGTATTG
GTGATGGACTCCAAGAAGTGGGGTTAAGAGTGTGACTGTTGTCGTTTCCA
AACTCCGACTTACACACTACGCCAGTATGGTTGAAAGACATGTATACCAC
CTTCGAAGGTTCATGCAATCGTGTGGACATGCAACACCCTTTATTTTCGT
TTCTTTTCTCTTATTCCACGGACTTCACTCTACGCGATGGACGTGTGTAT
TTCGATTGCCTCTCACACACTTACATACATATATCACCCACGAGATCATA
CGGAGACATGCCTCGCACTCCAACCTGACCATTTCTCCGTCCCTCTTTCT
ATTCCACCAACCCACCCTCCCTCCCTCCCATAGGTTCGGCCTCAACACCA
TCCGCTTGCCCGTGGGTTACTGGTACTTCGCCGAGAAGGCGGGCCTGGAC
CCGTCCCCGTACCTTGTGCCGGACGAGGACATCTACGACGCGCAACACCC
AATCACCAAGGTCATCCGATGGGCCAAGGATGCGGGCCTGCAAGTCATCC
TGGACCTGCACGGGGCACCGCTTAGTCAGAATGGTCTGGACAATTCGGGC
AAAATGAGCGACGACCCAGACGTGCACAGGTGGGGCGAGACCTGGCTGTA
CAACGAGGCCGCCATCAGCGAGACGGTCCAGGTCCTGGAGGGCATGGCAT
TGTATATTAAGTACCTGTCGGAGGAGCTGCGCCTGGACAACATCATGATG
CTGGAGCTGGTGAATGAGCCGTGGGTATTTTTGGACATGGGCATGGTCCG
CGATTTCTATATCCTTGCCATCTCCTCCGTGCGCGCCGTGCTGCCCCAGT
TGCCCATCCTGCTGCACGATTCCTTCCACGGCGACATGTGGGCGATGATG
CTCAAGTACTTTCCCTTTGACAACGTCTTCATGGACACGCACCTGTACCA
CGGCTTCAACCCCTCCGACATCGCCTCCGACACCTACGAGGCCGACAAGC
TCAAAATGTACGTGCATGAGCGCATGGCCTGCGCCATGACCTCCATGCTG
CGCTACGAGACCTGCTCGGCCGCCCCCACGATTACGGGTGAGTTCTCTCT
GGCCATCGATAATTGCATGGACGCCATCGACCGCAAGTTCCAAAACTACG
GCCAGTGCGACCACATTGCTCTGCGCAAGACGGACCCCTGGTGGAAGGAC
CACATTCGCTCCTTCGCGCACCGGCAGATGGATGTCTACGAACGCGAGTT
AGGCTGGGCCTTCTGGACCTACAAGCTGGATGAGCACGCCGAGACCACAG
CCGAATCGGCACCGCTCTGGAGCTTCCGGCTGGCGGTCAAGGAGGGCTAC
ATTGATACCACCTACCCTCCTCACGCCTGCAAGTATGACCCCATTGCGGA
CTATCAGGGAGGAGCGTCCACGCCCGGTGATAAACCGGCAACCGACACTT
CCATTGATAAGGCTAACTCTGTGGCCGCTAAGCCCGAGTTGATGGTTGTG
GAGCGCACGGAGGTTGCGGAGTCTGAGCCCGCGGACGTTGTGCTTCCCTC
GTCCCGCCACGAAACGCCAGAGACTGGAATGCCCTCTTCCTCATCTGACC
TTACGGGCATCCTGTCGGCCTTGGCTGGCGTGGTGGCTATTCTGGGGGTT
ATCGTGCTTGTAACGCAAAACTACGCAAGCGGTCGCCGGCCATTAGCCAA
TATCATCACCTCTTTTCCGGCGGCCGTGCAGAACTTGCTGCCCCATGCTT
TGACTCGGGGGCATTACGACGCGGTGTCTGATCCCAGCATCTCGGCCACC
GCGCAAGTTTAG

Coding sequence (CDS) from alignment at scaffold_10:681250..683661+

>mRNA_4472 ID=mRNA_4472|Name=jgi.p|Nanoce1779_2|528270|organism=Nannochloropsis oceanica|type=CDS|length=3792bp|location=Sequence derived from alignment at scaffold_10:681250..683661+ (Nannochloropsis oceanica)
ATGGAGTGGCGAACTAAGCCTGCGGCCGGGTCTCTCTCTCATCAAAGCGT
TGACCCGAGTAATATGATATGTTCCTTGGATCCCAAGATCACTCCTGATT
CTCTGCAGGACTTCATCGCTGACGTCGGAGGCATGTGGGGCTCGGCGTGC
GGCCGCAATCGCGGAGTTTTTATCCTTGATCCGGCGGACGGAAAGACGTA
TGACTGCGGAAACTTTCCCGATAGCTGGTCGGTTTCAAATGCAGGGTCTC
TTCTGTCTGCAGAGCCTGAAAAAGCTGTCGCGGCCCTAGCGAACTACATC
TCGGCAGTGTACAACAGCACCATCGTCAAGGGCGTAGCCGCCTGCGATTT
TAATGGACTTGCGTACCTGACATGCGGACGGGAGGAGCCTTGGAAGAGAG
TTCCCTGGTACAGCAAGATCAAGAACCCCATCCGGGCCGTAAACATCGGC
GGCCTGTTTGTGCTGGAGCAGTGGATTTTGCCCGGCTTCGTGAAGTGGGG
CGAGGAGACTGGCATCTGGGACCAGTACTCTTACTCGTCCAAGTGTGCCA
AGATGGGCACTTGCGACAATCTCAAGAAGCACTGGAAGGAGTGGTACACT
GCCGCTGACTTTGATGCGGGCCTGCAAGTCATCCTGGACCTGCACGGGGC
ACCGCTTAGTCAGAATGGTCTGGACAATTCGGGCAAAATGAGCGACGACC
CAGACGTGCACAGGTGGGGCGAGACCTGGCTGTACAACGAGGCCGCCATC
AGCGAGACGGTCCAGGTCCTGGAGGGCATGGCATTGTATATTAAGTACCT
GTCGGAGGAGCTGCGCCTGGACAACATCATGATGCTGGAGCTGGTGAATG
AGCCGTGGGTATTTTTGGACATGGGCATGGTCCGCGATTTCTATATCCTT
GCCATCTCCTCCGTGCGCGCCGTGCTGCCCCAGTTGCCCATCCTGCTGCA
CGATTCCTTCCACGGCGACATGTGGGCGATGATGCTCAAGTACTTTCCCT
TTGACAACGTCTTCATGGACACGCACCTGTACCACGGCTTCAACCCCTCC
GACATCGCCTCCGACACCTACGAGGCCGACAAGCTCAAAATGTACGTGCA
TGAGCGCATGGCCTGCGCCATGACCTCCATGCTGCGCTACGAGACCTGCT
CGGCCGCCCCCACGATTACGGGTGAGTTCTCTCTGGCCATCGATAATTGC
ATGGACGCCATCGACCGCAAGTTCCAAAACTACGGCCAGTGCGACCACAT
TGCTCTGCGCAAGACGGACCCCTGGTGGAAGGACCACATTCGCTCCTTCG
CGCACCGGCAGATGGATGTCTACGAACGCGAGTTAGGCTGGGCCTTCTGG
ACCTACAAGCTGGATGAGCACGCCGAGACCACAGCCGAATCGGCACCGCT
CTGGAGCTTCCGGCTGGCGGTCAAGGAGGGCTACATTGATACCACCTACC
CTCCTCACGCCTGCAAGTATGACCCCATTGCGGACTATCAGGGAGGAGCG
TCCACGCCCGGTGATAAACCGGCAACCGACACTTCCATTGATAAGGCTAA
CTCTGTGGCCGCTAAGCCCGAGTTGATGGTTGTGGAGCGCACGGAGGTTG
CGGAGTCTGAGCCCGCGGACGTTGTGCTTCCCTCGTCCCGCCACGAAACG
CCAGAGACTGGAATGCCCTCTTCCTCATCTGACCTTACGGGCATCCTGTC
GGCCTTGGCTGGCGTGGTGGCTATTCTGGGGGTTATCGTGCTTGTAACGC
AAAACTACGCAAGCGGTCGCCGGCCATTAGCCAATATCATCACCTCTTTT
CCGGCGGCCGTGCAGAACTTGCTGCCCCATGCTTTGACTCGGGGGCATTA
CGACGCGGTGTCTGATCCCAGCATCTCGGCCACCGCGCAAGTTTAGATGG
AGTGGCGAACTAAGCCTGCGGCCGGGTCTCTCTCTCATCAAAGCGTTGAC
CCGAGTAATATGATATGTTCCTTGGATCCCAAGATCACTCCTGATTCTCT
GCAGGACTTCATCGCTGACGTCGGAGGCATGTGGGGCTCGGCGTGCGGCC
GCAATCGCGGAGTTTTTATCCTTGATCCGGCGGACGGAAAGACGTATGAC
TGCGGAAACTTTCCCGATAGCTGGTCGGTTTCAAATGCAGGGTCTCTTCT
GTCTGCAGAGCCTGAAAAAGCTGTCGCGGCCCTAGCGAACTACATCTCGG
CAGTGTACAACAGCACCATCGTCAAGGGCGTAGCCGCCTGCGATTTTAAT
GGACTTGCGTACCTGACATGCGGACGGGAGGAGCCTTGGAAGAGAGTTCC
CTGGTACAGCAAGATCAAGAACCCCATCCGGGCCGTAAACATCGGCGGCC
TGTTTGTGCTGGAGCAGTGGATTTTGCCCGGCTTCGTGAAGTGGGGCGAG
GAGACTGGCATCTGGGACCAGTACTCTTACTCGTCCAAGTGTGCCAAGAT
GGGCACTTGCGACAATCTCAAGAAGCACTGGAAGGAGTGGTACACTGCCG
CTGACTTTGATGCGGGCCTGCAAGTCATCCTGGACCTGCACGGGGCACCG
CTTAGTCAGAATGGTCTGGACAATTCGGGCAAAATGAGCGACGACCCAGA
CGTGCACAGGTGGGGCGAGACCTGGCTGTACAACGAGGCCGCCATCAGCG
AGACGGTCCAGGTCCTGGAGGGCATGGCATTGTATATTAAGTACCTGTCG
GAGGAGCTGCGCCTGGACAACATCATGATGCTGGAGCTGGTGAATGAGCC
GTGGGTATTTTTGGACATGGGCATGGTCCGCGATTTCTATATCCTTGCCA
TCTCCTCCGTGCGCGCCGTGCTGCCCCAGTTGCCCATCCTGCTGCACGAT
TCCTTCCACGGCGACATGTGGGCGATGATGCTCAAGTACTTTCCCTTTGA
CAACGTCTTCATGGACACGCACCTGTACCACGGCTTCAACCCCTCCGACA
TCGCCTCCGACACCTACGAGGCCGACAAGCTCAAAATGTACGTGCATGAG
CGCATGGCCTGCGCCATGACCTCCATGCTGCGCTACGAGACCTGCTCGGC
CGCCCCCACGATTACGGGTGAGTTCTCTCTGGCCATCGATAATTGCATGG
ACGCCATCGACCGCAAGTTCCAAAACTACGGCCAGTGCGACCACATTGCT
CTGCGCAAGACGGACCCCTGGTGGAAGGACCACATTCGCTCCTTCGCGCA
CCGGCAGATGGATGTCTACGAACGCGAGTTAGGCTGGGCCTTCTGGACCT
ACAAGCTGGATGAGCACGCCGAGACCACAGCCGAATCGGCACCGCTCTGG
AGCTTCCGGCTGGCGGTCAAGGAGGGCTACATTGATACCACCTACCCTCC
TCACGCCTGCAAGTATGACCCCATTGCGGACTATCAGGGAGGAGCGTCCA
CGCCCGGTGATAAACCGGCAACCGACACTTCCATTGATAAGGCTAACTCT
GTGGCCGCTAAGCCCGAGTTGATGGTTGTGGAGCGCACGGAGGTTGCGGA
GTCTGAGCCCGCGGACGTTGTGCTTCCCTCGTCCCGCCACGAAACGCCAG
AGACTGGAATGCCCTCTTCCTCATCTGACCTTACGGGCATCCTGTCGGCC
TTGGCTGGCGTGGTGGCTATTCTGGGGGTTATCGTGCTTGTAACGCAAAA
CTACGCAAGCGGTCGCCGGCCATTAGCCAATATCATCACCTCTTTTCCGG
CGGCCGTGCAGAACTTGCTGCCCCATGCTTTGACTCGGGGGCATTACGAC
GCGGTGTCTGATCCCAGCATCTCGGCCACCGCGCAAGTTTAG

Synonyms

Publications