jgi.p|Nanoce1779_2|589218, mRNA_4470 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589218
Unique Name	mRNA_4470
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2089
Alignment location	scaffold_10:673743..675831 +

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Properties


Property Name	Value
TranscriptId	589304
Track	FilteredModels2
ProteinId	589218

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:673743..675831 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589218	gene_4470	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589218	mRNA_4470-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4470	CDS_4470	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:673743..675831+
coding sequence from alignment at scaffold_10:673743..675831+

mRNA sequence

>mRNA_4470 ID=mRNA_4470|Name=jgi.p|Nanoce1779_2|589218|organism=Nannochloropsis oceanica|type=mRNA|length=2089bp
CCGGGACGGGGCACGAGGGGCTTGCCGCGGACGCACAAAGCGTGTAGCAT
CGGCAGACTCCAGCACCGAACCCCGCTTCCTCCCACTGCTGCTAAGGCTA
ATGCTACCACCCACCCCGCCAGTGGCATAAGGCGGCCTACTCCGGTCCAC
GGAGGGCGTGGTACGGAAGCGCGAAGCCGTCGCACGGCTATCTCCACCCC
CCTTTTGCTCATCCTCTTCCTCCTCCTGCTGGGCAAAACGGACACTGTGG
CTGTTGTTGATCCTCCCGCCAAAGGAAGTTAACGATGATGACACACGTGC
TTGTGCTTGCTGGGAGCGGTACGATGTGGTGAGGCCATTGCTTAAGGGTC
CCTGTCTTCCTCCCCCATCACCACCGTTACCATCGCTCATGAAGTTCAGG
TCGGGCATTTCGTCTTGAAGACTGCTAGCCACAGCCGCAGCGGCCGAGAA
AGGTGTCATGTTGCTTGCGATGGACGACCGTTTGTAGCGGGGAACACCCT
CACCATCCCTGCCGCCGCCCCCGCCTTGAGCAGTGCCAGCTCCGGAGGCC
ACAAAACCGGCCGAGGAAGGCAATGGCACTGGCGACCTTCCGCGTTGGTC
CCAGATGCGGGCCTTGCTCCCTTTCTTGTTCAGAAAAGTGTTTATCACCC
CATACACCTCTTCCACACCTCGTTGCCCGCCTTCACGCCCAGAACCTCTA
CTAGCAGCAACAGTGCCCCCACTTCCACTACTCTTTGACTCCTCAACGCC
ACCACCACCGCGCGTTGCCAGCGAAATCGTTGTCAGCCCTCTCTCTGACG
AAGGATCCACCCCTCGCGTGACGACAGGCTTCACCACCGGCACCAAAGGT
CGCGGCAGGCTCGCCTCCCCATCCTCCTGCATCCACGCAGGATGATGCGC
CGGACTCTGGCGTTGACCGCTGCTGCTGCTACTGCTGCTGGTGCTGTTAC
CGTTGTGGTGGTCGTCGCCAGTAACCTTGGCAGTGGCGACGACCGGCATA
TCGTTTGCATGCCCGACAAGTGTGGCTGCGTGCCTTGCGGGGGAGGAAGG
AGCGGGGGCTGTGGAAGGGCTGCGGGAGCGACTGCAAGTCGCTGGTGGGA
GGCGGGACGCCGGTGGTTGTTGTTGCGATTGCTGCTGCTGTTCAAACCGC
AGCCACTCCTTGAGCCGATCGGCGAGCTCGCTCTTCTTCCCTTTGTATGA
CAGGCCCTTGAGACGCAGGATCTTTCTCAGCTCCGACACGGTGATGCTGT
CAACCGGCTGGCCCTCGTACCCCCCCTCTTCCGCCGCGCCATCTGTCCAG
GAAGGGGGCAGCTCCACCGCACCGTCATCATCCACCCCCCCCGCATACGC
AATATACCTTCGTGGAGCCCAAGCTGTCGAGGCGCTTGCTGGGGTTTTCG
GTTTCATCCCATTCATTACCGCCACACGAGCAGACGGGGAGGCCCAGTCA
TCCCCCAAAGATGCCACCAGGTTCCTAGACATCTCCCCGCTGCCATTCCT
TCGCGCATGCTCCTCCCGCGGGGACATTAAGCCCATCACACCTTTGACGG
CGGAGGAAACCAGGCTGCTGCTCGTCTTGAGGAGGCGCTGGAAGGGCGTC
GCCTGGTGGTCCTCCTCCTCGTCCTCCCTCCTTACTAACTTCGCTTGTCC
TGCCGTGGGCGGACGGTTTCCGCGTCTTGACTGCTGTTGCGGGGCATCGG
CACTGGGTATGTTCAAGCCTATTGCTCCTCTTTCCAAGACATTATCCTCT
CCCTCTTCTTCTTCTTCATCGTTTCTCCTGCGTCCTTGCAGGCGGGTGCT
GCTGGAGCAGCTGCTGCTGCTGTTGCTGCTGCTGTTGCCCTTACCCGCCC
CCGCTTCATCGCGCGCTCGAAGCACGTCCCTCCGCGTTCGCATCCGTGTC
AAAGAAGCTGGTGATTGGGCCGCACGTCCGACTGGTGCCGGTCGTGCTGG
TGATGATGATGCTTGCCTCTCCTCCGTCAGCCGCGCCGCTCCACGTGATC
GCGTACCACCGCCGCCACCACCGCCTCTCCTTTCGAGTGATGGTGATTGG
GTCCTGCTTCGCGTTAGACGGGCGCTGGGCATCCCTATT

protein sequence of jgi.p|Nanoce1779_2|589218

>mRNA_4470-protein ID=mRNA_4470-protein|Name=jgi.p|Nanoce1779_2|589218|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MMRRTLALTAAAATAAGAVTVVVVVASNLGSGDDRHIVCMPDKCGCVPCG
GGRSGGCGRAAGATASRWWEAGRRWLLLRLLLLFKPQPLLEPIGELALLP
FV*

mRNA from alignment at scaffold_10:673743..675831+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4470 ID=mRNA_4470|Name=jgi.p|Nanoce1779_2|589218|organism=Nannochloropsis oceanica|type=mRNA|length=2089bp|location=Sequence derived from alignment at scaffold_10:673743..675831+ (Nannochloropsis oceanica)
CCGGGACGGGGCACGAGGGGCTTGCCGCGGACGCACAAAGCGTGTAGCAT
CGGCAGACTCCAGCACCGAACCCCGCTTCCTCCCACTGCTGCTAAGGCTA
ATGCTACCACCCACCCCGCCAGTGGCATAAGGCGGCCTACTCCGGTCCAC
GGAGGGCGTGGTACGGAAGCGCGAAGCCGTCGCACGGCTATCTCCACCCC
CCTTTTGCTCATCCTCTTCCTCCTCCTGCTGGGCAAAACGGACACTGTGG
CTGTTGTTGATCCTCCCGCCAAAGGAAGTTAACGATGATGACACACGTGC
TTGTGCTTGCTGGGAGCGGTACGATGTGGTGAGGCCATTGCTTAAGGGTC
CCTGTCTTCCTCCCCCATCACCACCGTTACCATCGCTCATGAAGTTCAGG
TCGGGCATTTCGTCTTGAAGACTGCTAGCCACAGCCGCAGCGGCCGAGAA
AGGTGTCATGTTGCTTGCGATGGACGACCGTTTGTAGCGGGGAACACCCT
CACCATCCCTGCCGCCGCCCCCGCCTTGAGCAGTGCCAGCTCCGGAGGCC
ACAAAACCGGCCGAGGAAGGCAATGGCACTGGCGACCTTCCGCGTTGGTC
CCAGATGCGGGCCTTGCTCCCTTTCTTGTTCAGAAAAGTGTTTATCACCC
CATACACCTCTTCCACACCTCGTTGCCCGCCTTCACGCCCAGAACCTCTA
CTAGCAGCAACAGTGCCCCCACTTCCACTACTCTTTGACTCCTCAACGCC
ACCACCACCGCGCGTTGCCAGCGAAATCGTTGTCAGCCCTCTCTCTGACG
AAGGATCCACCCCTCGCGTGACGACAGGCTTCACCACCGGCACCAAAGGT
CGCGGCAGGCTCGCCTCCCCATCCTCCTGCATCCACGCAGGATGATGCGC
CGGACTCTGGCGTTGACCGCTGCTGCTGCTACTGCTGCTGGTGCTGTTAC
CGTTGTGGTGGTCGTCGCCAGTAACCTTGGCAGTGGCGACGACCGGCATA
TCGTTTGCATGCCCGACAAGTGTGGCTGCGTGCCTTGCGGGGGAGGAAGG
AGCGGGGGCTGTGGAAGGGCTGCGGGAGCGACTGCAAGTCGCTGGTGGGA
GGCGGGACGCCGGTGGTTGTTGTTGCGATTGCTGCTGCTGTTCAAACCGC
AGCCACTCCTTGAGCCGATCGGCGAGCTCGCTCTTCTTCCCTTTGTATGA
CAGGCCCTTGAGACGCAGGATCTTTCTCAGCTCCGACACGGTGATGCTGT
CAACCGGCTGGCCCTCGTACCCCCCCTCTTCCGCCGCGCCATCTGTCCAG
GAAGGGGGCAGCTCCACCGCACCGTCATCATCCACCCCCCCCGCATACGC
AATATACCTTCGTGGAGCCCAAGCTGTCGAGGCGCTTGCTGGGGTTTTCG
GTTTCATCCCATTCATTACCGCCACACGAGCAGACGGGGAGGCCCAGTCA
TCCCCCAAAGATGCCACCAGGTTCCTAGACATCTCCCCGCTGCCATTCCT
TCGCGCATGCTCCTCCCGCGGGGACATTAAGCCCATCACACCTTTGACGG
CGGAGGAAACCAGGCTGCTGCTCGTCTTGAGGAGGCGCTGGAAGGGCGTC
GCCTGGTGGTCCTCCTCCTCGTCCTCCCTCCTTACTAACTTCGCTTGTCC
TGCCGTGGGCGGACGGTTTCCGCGTCTTGACTGCTGTTGCGGGGCATCGG
CACTGGGTATGTTCAAGCCTATTGCTCCTCTTTCCAAGACATTATCCTCT
CCCTCTTCTTCTTCTTCATCGTTTCTCCTGCGTCCTTGCAGGCGGGTGCT
GCTGGAGCAGCTGCTGCTGCTGTTGCTGCTGCTGTTGCCCTTACCCGCCC
CCGCTTCATCGCGCGCTCGAAGCACGTCCCTCCGCGTTCGCATCCGTGTC
AAAGAAGCTGGTGATTGGGCCGCACGTCCGACTGGTGCCGGTCGTGCTGG
TGATGATGATGCTTGCCTCTCCTCCGTCAGCCGCGCCGCTCCACGTGATC
GCGTACCACCGCCGCCACCACCGCCTCTCCTTTCGAGTGATGGTGATTGG
GTCCTGCTTCGCGTTAGACGGGCGCTGGGCATCCCTATT

Coding sequence (CDS) from alignment at scaffold_10:673743..675831+

>mRNA_4470 ID=mRNA_4470|Name=jgi.p|Nanoce1779_2|589218|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_10:673743..675831+ (Nannochloropsis oceanica)
ATGATGCGCCGGACTCTGGCGTTGACCGCTGCTGCTGCTACTGCTGCTGG
TGCTGTTACCGTTGTGGTGGTCGTCGCCAGTAACCTTGGCAGTGGCGACG
ACCGGCATATCGTTTGCATGCCCGACAAGTGTGGCTGCGTGCCTTGCGGG
GGAGGAAGGAGCGGGGGCTGTGGAAGGGCTGCGGGAGCGACTGCAAGTCG
CTGGTGGGAGGCGGGACGCCGGTGGTTGTTGTTGCGATTGCTGCTGCTGT
TCAAACCGCAGCCACTCCTTGAGCCGATCGGCGAGCTCGCTCTTCTTCCC
TTTGTATGA

Synonyms

Publications