jgi.p|Nanoce1779_2|577352, mRNA_447 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577352
Unique Name	mRNA_447
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1798
Alignment location	scaffold_3:1102434..1104231 -

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Properties


Property Name	Value
TranscriptId	577438
Track	FilteredModels2
ProteinId	577352

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1102434..1104231 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577352	gene_447	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577352	mRNA_447-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_447	CDS_447	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1102434..1104231-
coding sequence from alignment at scaffold_3:1102434..1104231-

mRNA sequence

>mRNA_447 ID=mRNA_447|Name=jgi.p|Nanoce1779_2|577352|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp
AGGTGCTGCCAATTATGCATCGTCCGACTGGTTCATAGGAGTAAGCACGG
CGGCCGTCATGCCGCCGCGACGGTTGGCCCCACAACCATTTCTCTAAGTC
CCGATTATGATCCCCTCAAGCAGCCACAACCGTACCAGCTATGGCAGCGG
CAGATTTTCCTTCAAATGGCTGGCACGGGGCGTGGTTCTTGTCATAATCC
TAGACCTCCTCTTACAGGTTCGCTTGTTCTTCCCCGGTCATTCCCTCCGC
GGAGGCGCAGCGTGCACATCATACGACCCTGTAGCGACCCCACACATTCT
CCATTTATTGCACACCACTTTCAACACCACGCCGTCCATCTCCACCGCCA
CCCCGGAAGCGCTCTTCGAGGGCCAAGGCGTGGTCATGGCGGCCTCAGGC
GCCATCAGCCGTCAAGCCGCCGGGGCCTACGTCACAGCCTTTGTCCTCCG
CCACGTCCTCCACGAAACTCTGCCCATCGAAATATTTTACTCTGGACCCG
AAGAAGCCTTCCATGGCCCCGTTCTCGAAGCGCTAAAAACTCTCTCAAAT
GTCCACCTGATTGACCTCGAACAAGCCTTGACAGACCTCCACTCTCGCGG
CCTCATGTCCCTCGAGCCTCTCCCCCCACTGCGTGTTCTCAAAGGATACG
CAGCCAAAGTCTACGCGATGCAGGCCTGCTCCTTCCAAGAAGCTCTCTTG
TTCGATGCGGGTGTGATCCCGTTTGCGTCCTCCTCGCTGTTTTTCTCCCT
CCCTTCTTACAAGCGACAAGGTCTTGCTGTGTTTAGTGATTATGTAAGCA
TCGACCAAGGATTGTGGAAACCCTTCCTGCGGGACATGTGCCTTGACCTT
AACCACGTCTTCCGTTCATTGGGAGGACGTGAATTGGACAGTTCGTGTGT
AGTGATGGATAAACTCAAAAACGCCGATGCCCTCAGTGTGGCTGTTGCTC
TGAATGGGCCCTTGCAGCGCACTACCTACGTCTCTCTTCTGGGCGATAAG
GATACCTGGGCGCTGGGCATGTTCTTCGTCGGGAAGACGGTGTCTGTGCA
CGAGGTAGAACCTGGTTATCTACTGGTAGCTCGCGAGGAAGGGAGGGAAG
AAGGGCCACGACATGCGCGGAAGGTGAATGGTCATTTGCAGTTTTTGAGG
AATAAGTCGGTGCAGGAACCCCCTGGGCTCGTGCCTTTGCACCACAACAA
CCAATTGCTGGATTTGCGAGAATTTCCGTTGATTGGAAATAGGATCTATA
TGGATGTTTTCTCTAAGTTGGGGGATGTGCTGATGCCGGGGACGAGGAGG
AGAGATTGTAGAGGGTTTGGAGTGGAGGGACTTTTGCCACTGTCGAGTGT
GATGAGAGAGGCGTACGGTGAGATTGCGCGGGACTTAAAGGAGAAGGGGA
TTAATCATTGCGTATGTCGGGATGATTGGATGTCGTGCGAGGCGGATATT
GAAAGGTTAAGGAAGAAGCATTGGGTGTTGCGGGTCATTGATTACTGGGC
TCCAACACGATGGAAAGAGGCAAGGATGAAGGAGGCACGGGCACGACAAG
CAAAAGACGCGGCAGCAGCACCCTGAAGAGCATGTGGGAGGCGAATATCA
AGACATCACGTGGTAATCAGATAAATGGATGGGCTGCAGCAGCGGCGAAA
GAGGTCGTAGGTAGCTAGCTCACCATGCAAATCGCGTAATCGTGCGGAAA
GTAAAGAAATGGTGTGACTTTCTGGAGACGCCTAAAGAATGTTGAAAAAG
TTAGAAAATATGAGGAAATTGACCGATAGAAGGAAAGATAGTCAGATG

protein sequence of jgi.p|Nanoce1779_2|577352

>mRNA_447-protein ID=mRNA_447-protein|Name=jgi.p|Nanoce1779_2|577352|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MIPSSSHNRTSYGSGRFSFKWLARGVVLVIILDLLLQVRLFFPGHSLRGG
AACTSYDPVATPHILHLLHTTFNTTPSISTATPEALFEGQGVVMAASGAI
SRQAAGAYVTAFVLRHVLHETLPIEIFYSGPEEAFHGPVLEALKTLSNVH
LIDLEQALTDLHSRGLMSLEPLPPLRVLKGYAAKVYAMQACSFQEALLFD
AGVIPFASSSLFFSLPSYKRQGLAVFSDYVSIDQGLWKPFLRDMCLDLNH
VFRSLGGRELDSSCVVMDKLKNADALSVAVALNGPLQRTTYVSLLGDKDT
WALGMFFVGKTVSVHEVEPGYLLVAREEGREEGPRHARKVNGHLQFLRNK
SVQEPPGLVPLHHNNQLLDLREFPLIGNRIYMDVFSKLGDVLMPGTRRRD
CRGFGVEGLLPLSSVMREAYGEIARDLKEKGINHCVCRDDWMSCEADIER
LRKKHWVLRVIDYWAPTRWKEARMKEARARQAKDAAAAP*

mRNA from alignment at scaffold_3:1102434..1104231-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_447 ID=mRNA_447|Name=jgi.p|Nanoce1779_2|577352|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp|location=Sequence derived from alignment at scaffold_3:1102434..1104231- (Nannochloropsis oceanica)
AGGTGCTGCCAATTATGCATCGTCCGACTGGTTCATAGGAGTAAGCACGG
CGGCCGTCATGCCGCCGCGACGGTTGGCCCCACAACCATTTCTCTAAGTC
CCGATTATGATCCCCTCAAGCAGCCACAACCGTACCAGCTATGGCAGCGG
CAGATTTTCCTTCAAATGGCTGGCACGGGGCGTGGTTCTTGTCATAATCC
TAGACCTCCTCTTACAGGTTCGCTTGTTCTTCCCCGGTCATTCCCTCCGC
GGAGGCGCAGCGTGCACATCATACGACCCTGTAGCGACCCCACACATTCT
CCATTTATTGCACACCACTTTCAACACCACGCCGTCCATCTCCACCGCCA
CCCCGGAAGCGCTCTTCGAGGGCCAAGGCGTGGTCATGGCGGCCTCAGGC
GCCATCAGCCGTCAAGCCGCCGGGGCCTACGTCACAGCCTTTGTCCTCCG
CCACGTCCTCCACGAAACTCTGCCCATCGAAATATTTTACTCTGGACCCG
AAGAAGCCTTCCATGGCCCCGTTCTCGAAGCGCTAAAAACTCTCTCAAAT
GTCCACCTGATTGACCTCGAACAAGCCTTGACAGACCTCCACTCTCGCGG
CCTCATGTCCCTCGAGCCTCTCCCCCCACTGCGTGTTCTCAAAGGATACG
CAGCCAAAGTCTACGCGATGCAGGCCTGCTCCTTCCAAGAAGCTCTCTTG
TTCGATGCGGGTGTGATCCCGTTTGCGTCCTCCTCGCTGTTTTTCTCCCT
CCCTTCTTACAAGCGACAAGGTCTTGCTGTGTTTAGTGATTATGTAAGCA
TCGACCAAGGATTGTGGAAACCCTTCCTGCGGGACATGTGCCTTGACCTT
AACCACGTCTTCCGTTCATTGGGAGGACGTGAATTGGACAGTTCGTGTGT
AGTGATGGATAAACTCAAAAACGCCGATGCCCTCAGTGTGGCTGTTGCTC
TGAATGGGCCCTTGCAGCGCACTACCTACGTCTCTCTTCTGGGCGATAAG
GATACCTGGGCGCTGGGCATGTTCTTCGTCGGGAAGACGGTGTCTGTGCA
CGAGGTAGAACCTGGTTATCTACTGGTAGCTCGCGAGGAAGGGAGGGAAG
AAGGGCCACGACATGCGCGGAAGGTGAATGGTCATTTGCAGTTTTTGAGG
AATAAGTCGGTGCAGGAACCCCCTGGGCTCGTGCCTTTGCACCACAACAA
CCAATTGCTGGATTTGCGAGAATTTCCGTTGATTGGAAATAGGATCTATA
TGGATGTTTTCTCTAAGTTGGGGGATGTGCTGATGCCGGGGACGAGGAGG
AGAGATTGTAGAGGGTTTGGAGTGGAGGGACTTTTGCCACTGTCGAGTGT
GATGAGAGAGGCGTACGGTGAGATTGCGCGGGACTTAAAGGAGAAGGGGA
TTAATCATTGCGTATGTCGGGATGATTGGATGTCGTGCGAGGCGGATATT
GAAAGGTTAAGGAAGAAGCATTGGGTGTTGCGGGTCATTGATTACTGGGC
TCCAACACGATGGAAAGAGGCAAGGATGAAGGAGGCACGGGCACGACAAG
CAAAAGACGCGGCAGCAGCACCCTGAAGAGCATGTGGGAGGCGAATATCA
AGACATCACGTGGTAATCAGATAAATGGATGGGCTGCAGCAGCGGCGAAA
GAGGTCGTAGGTAGCTAGCTCACCATGCAAATCGCGTAATCGTGCGGAAA
GTAAAGAAATGGTGTGACTTTCTGGAGACGCCTAAAGAATGTTGAAAAAG
TTAGAAAATATGAGGAAATTGACCGATAGAAGGAAAGATAGTCAGATG

Coding sequence (CDS) from alignment at scaffold_3:1102434..1104231-

>mRNA_447 ID=mRNA_447|Name=jgi.p|Nanoce1779_2|577352|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_3:1102434..1104231- (Nannochloropsis oceanica)
ATGATCCCCTCAAGCAGCCACAACCGTACCAGCTATGGCAGCGGCAGATT
TTCCTTCAAATGGCTGGCACGGGGCGTGGTTCTTGTCATAATCCTAGACC
TCCTCTTACAGGTTCGCTTGTTCTTCCCCGGTCATTCCCTCCGCGGAGGC
GCAGCGTGCACATCATACGACCCTGTAGCGACCCCACACATTCTCCATTT
ATTGCACACCACTTTCAACACCACGCCGTCCATCTCCACCGCCACCCCGG
AAGCGCTCTTCGAGGGCCAAGGCGTGGTCATGGCGGCCTCAGGCGCCATC
AGCCGTCAAGCCGCCGGGGCCTACGTCACAGCCTTTGTCCTCCGCCACGT
CCTCCACGAAACTCTGCCCATCGAAATATTTTACTCTGGACCCGAAGAAG
CCTTCCATGGCCCCGTTCTCGAAGCGCTAAAAACTCTCTCAAATGTCCAC
CTGATTGACCTCGAACAAGCCTTGACAGACCTCCACTCTCGCGGCCTCAT
GTCCCTCGAGCCTCTCCCCCCACTGCGTGTTCTCAAAGGATACGCAGCCA
AAGTCTACGCGATGCAGGCCTGCTCCTTCCAAGAAGCTCTCTTGTTCGAT
GCGGGTGTGATCCCGTTTGCGTCCTCCTCGCTGTTTTTCTCCCTCCCTTC
TTACAAGCGACAAGGTCTTGCTGTGTTTAGTGATTATGTAAGCATCGACC
AAGGATTGTGGAAACCCTTCCTGCGGGACATGTGCCTTGACCTTAACCAC
GTCTTCCGTTCATTGGGAGGACGTGAATTGGACAGTTCGTGTGTAGTGAT
GGATAAACTCAAAAACGCCGATGCCCTCAGTGTGGCTGTTGCTCTGAATG
GGCCCTTGCAGCGCACTACCTACGTCTCTCTTCTGGGCGATAAGGATACC
TGGGCGCTGGGCATGTTCTTCGTCGGGAAGACGGTGTCTGTGCACGAGGT
AGAACCTGGTTATCTACTGGTAGCTCGCGAGGAAGGGAGGGAAGAAGGGC
CACGACATGCGCGGAAGGTGAATGGTCATTTGCAGTTTTTGAGGAATAAG
TCGGTGCAGGAACCCCCTGGGCTCGTGCCTTTGCACCACAACAACCAATT
GCTGGATTTGCGAGAATTTCCGTTGATTGGAAATAGGATCTATATGGATG
TTTTCTCTAAGTTGGGGGATGTGCTGATGCCGGGGACGAGGAGGAGAGAT
TGTAGAGGGTTTGGAGTGGAGGGACTTTTGCCACTGTCGAGTGTGATGAG
AGAGGCGTACGGTGAGATTGCGCGGGACTTAAAGGAGAAGGGGATTAATC
ATTGCGTATGTCGGGATGATTGGATGTCGTGCGAGGCGGATATTGAAAGG
TTAAGGAAGAAGCATTGGGTGTTGCGGGTCATTGATTACTGGGCTCCAAC
ACGATGGAAAGAGGCAAGGATGAAGGAGGCACGGGCACGACAAGCAAAAG
ACGCGGCAGCAGCACCCTGA

Synonyms

Publications