jgi.p|Nanoce1779_2|589216, mRNA_4469 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589216
Unique Name	mRNA_4469
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2591
Alignment location	scaffold_10:670568..673158 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589302
Track	FilteredModels2
ProteinId	589216

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:670568..673158 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589216	gene_4469	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589216	mRNA_4469-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4469	CDS_4469	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:670568..673158-
coding sequence from alignment at scaffold_10:670568..673158-

mRNA sequence

>mRNA_4469 ID=mRNA_4469|Name=jgi.p|Nanoce1779_2|589216|organism=Nannochloropsis oceanica|type=mRNA|length=2591bp
GTTCATCTTTACGCCTCCTGTCAAACGCCGATTGCGTCCTCGCCGTGCGG
ACCAGCAACTACAGCAACAGCAGCAACAACAGCAACAACAGAAGCAACAA
CCATCACTCCTTCGCCCTCCTGCGACCTCGGTCCCAGCGCCTGCCAGTAT
GAAGAAAGACGCGGACCGCGCCGCCATGCCTCCCCCGCAGCCGCGGCAGG
GTATCCCGGTCCCTGCTCCTGCCCCCCCCGCTGACACCAAGCCGTCCACC
GGAAGTGGGGGGGGCGGTTGGGGGGACCTACAAGCCCGCCTGCAAAAACC
GGGGTCATGGAAGTGCGACGGCTGCTTGTCGACCAATATCGACGCAGCTC
TTCTCAAATGCCCGTCCTGCGAGTCTCCCAAGCCTGGTTCTGCCTCCTCC
GCCCCTCCCTCGGTATCTCCTGCCCCAACGTCGGCAACAGCGTTTGCCAC
CACTCCTGTCCCGGCGGCAGCATTGACCAAGACGAGCATGCCCACGTTTG
GCATGGGTTCAATCACCTCCCAGGGCTTCAACTTTGGGGGAGGAGGAAGT
GGAGTGGCCGCGGGCGGAGGCGCCGCGGCTGAGCCAAAGACAACAGAAGG
TGAAGGGGTGAAAGACAGTGAAAGTGGGGACAAAGCAAAGGGAAGAATCG
CCGCAGGGCCGACTTTTGAAGGAGAAAAAGGAGGAGGGGCGGGGGAAGGA
GGGATGACTACTTCTCAGATGGGGACCAAGTGCGGTGGCTTCACCTTCGA
TGCGGCCCCAACGTCGACTGAAAAGAAGCATCAGGAGAAGCAGAAAGAGA
AGGATGGAGGAGAGAGCAAGGAGGAAAATACCGATCAAGCAGCATCGGCG
TCTGTGATCTCTCCCTTTGTCTTCGGGGCTAGCACGAGCAATGTGGTAGC
GGGCAAGGAAAAGGAAGCGGCCGTGCCTGCGCCTAAGCTACCCTCTTTCA
CCTTTGGAGGGCTGCCTTCTTCGTCGACAGCGGCTGTGGACAGCTCCGCC
AATGGCGGCGACAAAGATACGGCCAAGACGACCAGCACCACACCTGCACC
TTCCACCCCCTCCTTTACCTTCGGGGGGACAGGAACGGCGGGTGGGGCTG
CCACTTTTACTGCTCCTTCTTTCGGTACATTTGAAGCTCCCACGGCCCAA
ACAGCTCCTGTTATGTCAAAATTGTTTCCAACGGCCGCCTCTTCTGCCTC
CTCGGAAAGTGTGCCAACTTCCAGTCCGGTGGCCTTCCCGCCCGTGTCTC
TGGCCCCGTCTAAGCCGAGCAGCGCCGGTTCCACCGGCGGCAGTCTATTT
GCCAACGTCCCGTCCATCCTTCCACCCCTGTCCGGGACCTCCGCCGTTGC
CGACCAGCCCACGAGTGTAATTGGCTTTGGCTCGGCAACGTCGACTTCAA
CAGCCCCTGAAGTGTTGAAGAGCACACCGTCTTTACCGACCTTCCCCACC
TCGCTCCCTGCATCGAGCAGCGGAAGCATCACTGGGACGGGAGCTGGCCT
ACCTTCTTTCACCTTTGGTGCGGCACCAGCCCCCGCTGCCACTGCCCCTG
GAGGCCTTAGCTCTTTCTCATTCAGTAGTGGAGGCACGACAGCGACCCCA
AGTCTAAAGCCCAGTGGCAGCGGTGGAGGGCTTGGCAGCGTCCCTTCTCC
TGGAGGTGGCTCCATGGACATGAGCGCCAGCCCCCGGCTCTCCCCCGCAC
CCACTCCCGCGGCCTCCGCGTCTGCCTTTAGCTCCGCCCCTCCTTCCTTC
CAATTCGGCAGCCATGGTGGTTCGGCCAAGCCTCCCCTTTTTGGAGCCAC
GCCGACTCCTGCCGCCCCCGCGAGTGGGTTTGGTGCTGGCGTAGGTATAG
GAGGAGGCAGTATGGGGGCTGCCCCGCCTTCTGGTCTCACCAGCACAGCC
CCCACGTTTGGCGCGGCTTCACCTGCTCCCATGTTTGGAGCATCAGCGAC
GAGCACCCCCGCCGCGGCTTTTGGGCAGCCCGCTGCCGCGCCTGCAGGGG
GTATGTTCGGTGGCCCTCCATCTGCTCCTGGTGGCATGGCCGGAGGCTTC
GGAGCATCGAGTGAGGCACCCTCGTTTGGGGGATTTGGGGCCTCAGCAGC
AGGAGTGGGAGGGATAAGTGGGTTCGGGGCCCTGCCTGCTCCTGGCGGCG
ATGCGTTCTCGCTTGGTGCCAGCTCTAGTCAGCAGCAGCCTGGTGGACGC
AAGATAATCAAGGCGCGGCGGCCTGTTCGAAAGTAAGGCAAAAAATAAAG
AAGAGACAGAGAAACAGTAGAAAGCGATGTTAGGTAGTGCGAGGGTGGCG
AACGTGACATCAGAAAAGCGACTTAGTTAGGGTGGGAGTACGGTTCTTTG
ATGAGAAGTAAAAGGTGAGATGTGTATGGTACTTTAAAGGGGGTAGAACT
CACAGCAAGATAATGAGGCGCTACTTTTGCTCGGTGGGCGAGGAGGGGAC
AGATCATGACCCACTCATGAATGTGTGAGGGTAGGATACATGACCTTACA
GTGCAGGAGGCCGGCCTAAGACCACTGGAGTGAAATAGAAGTAAAAGGAG
AGAGTGGAAGGAGAAAAAGAAAAAGAAATGCCATCAAGAAC

protein sequence of jgi.p|Nanoce1779_2|589216

>mRNA_4469-protein ID=mRNA_4469-protein|Name=jgi.p|Nanoce1779_2|589216|organism=Nannochloropsis oceanica|type=polypeptide|length=696bp
MKKDADRAAMPPPQPRQGIPVPAPAPPADTKPSTGSGGGGWGDLQARLQK
PGSWKCDGCLSTNIDAALLKCPSCESPKPGSASSAPPSVSPAPTSATAFA
TTPVPAAALTKTSMPTFGMGSITSQGFNFGGGGSGVAAGGGAAAEPKTTE
GEGVKDSESGDKAKGRIAAGPTFEGEKGGGAGEGGMTTSQMGTKCGGFTF
DAAPTSTEKKHQEKQKEKDGGESKEENTDQAASASVISPFVFGASTSNVV
AGKEKEAAVPAPKLPSFTFGGLPSSSTAAVDSSANGGDKDTAKTTSTTPA
PSTPSFTFGGTGTAGGAATFTAPSFGTFEAPTAQTAPVMSKLFPTAASSA
SSESVPTSSPVAFPPVSLAPSKPSSAGSTGGSLFANVPSILPPLSGTSAV
ADQPTSVIGFGSATSTSTAPEVLKSTPSLPTFPTSLPASSSGSITGTGAG
LPSFTFGAAPAPAATAPGGLSSFSFSSGGTTATPSLKPSGSGGGLGSVPS
PGGGSMDMSASPRLSPAPTPAASASAFSSAPPSFQFGSHGGSAKPPLFGA
TPTPAAPASGFGAGVGIGGGSMGAAPPSGLTSTAPTFGAASPAPMFGASA
TSTPAAAFGQPAAAPAGGMFGGPPSAPGGMAGGFGASSEAPSFGGFGASA
AGVGGISGFGALPAPGGDAFSLGASSSQQQPGGRKIIKARRPVRK*

mRNA from alignment at scaffold_10:670568..673158-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4469 ID=mRNA_4469|Name=jgi.p|Nanoce1779_2|589216|organism=Nannochloropsis oceanica|type=mRNA|length=2591bp|location=Sequence derived from alignment at scaffold_10:670568..673158- (Nannochloropsis oceanica)
GTTCATCTTTACGCCTCCTGTCAAACGCCGATTGCGTCCTCGCCGTGCGG
ACCAGCAACTACAGCAACAGCAGCAACAACAGCAACAACAGAAGCAACAA
CCATCACTCCTTCGCCCTCCTGCGACCTCGGTCCCAGCGCCTGCCAGTAT
GAAGAAAGACGCGGACCGCGCCGCCATGCCTCCCCCGCAGCCGCGGCAGG
GTATCCCGGTCCCTGCTCCTGCCCCCCCCGCTGACACCAAGCCGTCCACC
GGAAGTGGGGGGGGCGGTTGGGGGGACCTACAAGCCCGCCTGCAAAAACC
GGGGTCATGGAAGTGCGACGGCTGCTTGTCGACCAATATCGACGCAGCTC
TTCTCAAATGCCCGTCCTGCGAGTCTCCCAAGCCTGGTTCTGCCTCCTCC
GCCCCTCCCTCGGTATCTCCTGCCCCAACGTCGGCAACAGCGTTTGCCAC
CACTCCTGTCCCGGCGGCAGCATTGACCAAGACGAGCATGCCCACGTTTG
GCATGGGTTCAATCACCTCCCAGGGCTTCAACTTTGGGGGAGGAGGAAGT
GGAGTGGCCGCGGGCGGAGGCGCCGCGGCTGAGCCAAAGACAACAGAAGG
TGAAGGGGTGAAAGACAGTGAAAGTGGGGACAAAGCAAAGGGAAGAATCG
CCGCAGGGCCGACTTTTGAAGGAGAAAAAGGAGGAGGGGCGGGGGAAGGA
GGGATGACTACTTCTCAGATGGGGACCAAGTGCGGTGGCTTCACCTTCGA
TGCGGCCCCAACGTCGACTGAAAAGAAGCATCAGGAGAAGCAGAAAGAGA
AGGATGGAGGAGAGAGCAAGGAGGAAAATACCGATCAAGCAGCATCGGCG
TCTGTGATCTCTCCCTTTGTCTTCGGGGCTAGCACGAGCAATGTGGTAGC
GGGCAAGGAAAAGGAAGCGGCCGTGCCTGCGCCTAAGCTACCCTCTTTCA
CCTTTGGAGGGCTGCCTTCTTCGTCGACAGCGGCTGTGGACAGCTCCGCC
AATGGCGGCGACAAAGATACGGCCAAGACGACCAGCACCACACCTGCACC
TTCCACCCCCTCCTTTACCTTCGGGGGGACAGGAACGGCGGGTGGGGCTG
CCACTTTTACTGCTCCTTCTTTCGGTACATTTGAAGCTCCCACGGCCCAA
ACAGCTCCTGTTATGTCAAAATTGTTTCCAACGGCCGCCTCTTCTGCCTC
CTCGGAAAGTGTGCCAACTTCCAGTCCGGTGGCCTTCCCGCCCGTGTCTC
TGGCCCCGTCTAAGCCGAGCAGCGCCGGTTCCACCGGCGGCAGTCTATTT
GCCAACGTCCCGTCCATCCTTCCACCCCTGTCCGGGACCTCCGCCGTTGC
CGACCAGCCCACGAGTGTAATTGGCTTTGGCTCGGCAACGTCGACTTCAA
CAGCCCCTGAAGTGTTGAAGAGCACACCGTCTTTACCGACCTTCCCCACC
TCGCTCCCTGCATCGAGCAGCGGAAGCATCACTGGGACGGGAGCTGGCCT
ACCTTCTTTCACCTTTGGTGCGGCACCAGCCCCCGCTGCCACTGCCCCTG
GAGGCCTTAGCTCTTTCTCATTCAGTAGTGGAGGCACGACAGCGACCCCA
AGTCTAAAGCCCAGTGGCAGCGGTGGAGGGCTTGGCAGCGTCCCTTCTCC
TGGAGGTGGCTCCATGGACATGAGCGCCAGCCCCCGGCTCTCCCCCGCAC
CCACTCCCGCGGCCTCCGCGTCTGCCTTTAGCTCCGCCCCTCCTTCCTTC
CAATTCGGCAGCCATGGTGGTTCGGCCAAGCCTCCCCTTTTTGGAGCCAC
GCCGACTCCTGCCGCCCCCGCGAGTGGGTTTGGTGCTGGCGTAGGTATAG
GAGGAGGCAGTATGGGGGCTGCCCCGCCTTCTGGTCTCACCAGCACAGCC
CCCACGTTTGGCGCGGCTTCACCTGCTCCCATGTTTGGAGCATCAGCGAC
GAGCACCCCCGCCGCGGCTTTTGGGCAGCCCGCTGCCGCGCCTGCAGGGG
GTATGTTCGGTGGCCCTCCATCTGCTCCTGGTGGCATGGCCGGAGGCTTC
GGAGCATCGAGTGAGGCACCCTCGTTTGGGGGATTTGGGGCCTCAGCAGC
AGGAGTGGGAGGGATAAGTGGGTTCGGGGCCCTGCCTGCTCCTGGCGGCG
ATGCGTTCTCGCTTGGTGCCAGCTCTAGTCAGCAGCAGCCTGGTGGACGC
AAGATAATCAAGGCGCGGCGGCCTGTTCGAAAGTAAGGCAAAAAATAAAG
AAGAGACAGAGAAACAGTAGAAAGCGATGTTAGGTAGTGCGAGGGTGGCG
AACGTGACATCAGAAAAGCGACTTAGTTAGGGTGGGAGTACGGTTCTTTG
ATGAGAAGTAAAAGGTGAGATGTGTATGGTACTTTAAAGGGGGTAGAACT
CACAGCAAGATAATGAGGCGCTACTTTTGCTCGGTGGGCGAGGAGGGGAC
AGATCATGACCCACTCATGAATGTGTGAGGGTAGGATACATGACCTTACA
GTGCAGGAGGCCGGCCTAAGACCACTGGAGTGAAATAGAAGTAAAAGGAG
AGAGTGGAAGGAGAAAAAGAAAAAGAAATGCCATCAAGAAC

Coding sequence (CDS) from alignment at scaffold_10:670568..673158-

>mRNA_4469 ID=mRNA_4469|Name=jgi.p|Nanoce1779_2|589216|organism=Nannochloropsis oceanica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_10:670568..673158- (Nannochloropsis oceanica)
ATGAAGAAAGACGCGGACCGCGCCGCCATGCCTCCCCCGCAGCCGCGGCA
GGGTATCCCGGTCCCTGCTCCTGCCCCCCCCGCTGACACCAAGCCGTCCA
CCGGAAGTGGGGGGGGCGGTTGGGGGGACCTACAAGCCCGCCTGCAAAAA
CCGGGGTCATGGAAGTGCGACGGCTGCTTGTCGACCAATATCGACGCAGC
TCTTCTCAAATGCCCGTCCTGCGAGTCTCCCAAGCCTGGTTCTGCCTCCT
CCGCCCCTCCCTCGGTATCTCCTGCCCCAACGTCGGCAACAGCGTTTGCC
ACCACTCCTGTCCCGGCGGCAGCATTGACCAAGACGAGCATGCCCACGTT
TGGCATGGGTTCAATCACCTCCCAGGGCTTCAACTTTGGGGGAGGAGGAA
GTGGAGTGGCCGCGGGCGGAGGCGCCGCGGCTGAGCCAAAGACAACAGAA
GGTGAAGGGGTGAAAGACAGTGAAAGTGGGGACAAAGCAAAGGGAAGAAT
CGCCGCAGGGCCGACTTTTGAAGGAGAAAAAGGAGGAGGGGCGGGGGAAG
GAGGGATGACTACTTCTCAGATGGGGACCAAGTGCGGTGGCTTCACCTTC
GATGCGGCCCCAACGTCGACTGAAAAGAAGCATCAGGAGAAGCAGAAAGA
GAAGGATGGAGGAGAGAGCAAGGAGGAAAATACCGATCAAGCAGCATCGG
CGTCTGTGATCTCTCCCTTTGTCTTCGGGGCTAGCACGAGCAATGTGGTA
GCGGGCAAGGAAAAGGAAGCGGCCGTGCCTGCGCCTAAGCTACCCTCTTT
CACCTTTGGAGGGCTGCCTTCTTCGTCGACAGCGGCTGTGGACAGCTCCG
CCAATGGCGGCGACAAAGATACGGCCAAGACGACCAGCACCACACCTGCA
CCTTCCACCCCCTCCTTTACCTTCGGGGGGACAGGAACGGCGGGTGGGGC
TGCCACTTTTACTGCTCCTTCTTTCGGTACATTTGAAGCTCCCACGGCCC
AAACAGCTCCTGTTATGTCAAAATTGTTTCCAACGGCCGCCTCTTCTGCC
TCCTCGGAAAGTGTGCCAACTTCCAGTCCGGTGGCCTTCCCGCCCGTGTC
TCTGGCCCCGTCTAAGCCGAGCAGCGCCGGTTCCACCGGCGGCAGTCTAT
TTGCCAACGTCCCGTCCATCCTTCCACCCCTGTCCGGGACCTCCGCCGTT
GCCGACCAGCCCACGAGTGTAATTGGCTTTGGCTCGGCAACGTCGACTTC
AACAGCCCCTGAAGTGTTGAAGAGCACACCGTCTTTACCGACCTTCCCCA
CCTCGCTCCCTGCATCGAGCAGCGGAAGCATCACTGGGACGGGAGCTGGC
CTACCTTCTTTCACCTTTGGTGCGGCACCAGCCCCCGCTGCCACTGCCCC
TGGAGGCCTTAGCTCTTTCTCATTCAGTAGTGGAGGCACGACAGCGACCC
CAAGTCTAAAGCCCAGTGGCAGCGGTGGAGGGCTTGGCAGCGTCCCTTCT
CCTGGAGGTGGCTCCATGGACATGAGCGCCAGCCCCCGGCTCTCCCCCGC
ACCCACTCCCGCGGCCTCCGCGTCTGCCTTTAGCTCCGCCCCTCCTTCCT
TCCAATTCGGCAGCCATGGTGGTTCGGCCAAGCCTCCCCTTTTTGGAGCC
ACGCCGACTCCTGCCGCCCCCGCGAGTGGGTTTGGTGCTGGCGTAGGTAT
AGGAGGAGGCAGTATGGGGGCTGCCCCGCCTTCTGGTCTCACCAGCACAG
CCCCCACGTTTGGCGCGGCTTCACCTGCTCCCATGTTTGGAGCATCAGCG
ACGAGCACCCCCGCCGCGGCTTTTGGGCAGCCCGCTGCCGCGCCTGCAGG
GGGTATGTTCGGTGGCCCTCCATCTGCTCCTGGTGGCATGGCCGGAGGCT
TCGGAGCATCGAGTGAGGCACCCTCGTTTGGGGGATTTGGGGCCTCAGCA
GCAGGAGTGGGAGGGATAAGTGGGTTCGGGGCCCTGCCTGCTCCTGGCGG
CGATGCGTTCTCGCTTGGTGCCAGCTCTAGTCAGCAGCAGCCTGGTGGAC
GCAAGATAATCAAGGCGCGGCGGCCTGTTCGAAAGTAA

Synonyms

Publications