jgi.p|Nanoce1779_2|24786, mRNA_4467 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|24786
Unique NamemRNA_4467
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1675
Alignment locationscaffold_10:666655..668525 -

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Properties
Property NameValue
TranscriptId24872
TrackFilteredModels2
ProteinId24786
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:666655..668525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|24786gene_4467Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|24786mRNA_4467-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4467CDS_4467Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4467 ID=mRNA_4467|Name=jgi.p|Nanoce1779_2|24786|organism=Nannochloropsis oceanica|type=mRNA|length=1675bp
GCTCGATCACTCGCGGACGAAGCACTGCCCCATATTCGCACGCTCCCATC
CCACCCCCTGCTGTACCCACCACCACTTCCTCACACCCAGACACAATACA
GAGGTCGAAGGGTGCAGCGAGGATGGAGAAAACTGGCTGCCAAAGCGCTG
CGCCCATGAAAACGACGGCTACTTATCCCTTCAAAGACAGGCCTGCCACG
AGCCCTCGCAGGTGGGTGCTTTCCGAGGTGGCACTGGAAGGCGTGGCGGC
ATACAAGTACGTATGCGGCTCATCAACGCCCCTGGATAGGATACTTAACC
ACTTCTGGAACTGGGCCGTGCAATTGCTTCCTCTTTGGCTAGCGCCCAAT
CTCGTGACGCTCCTGGGTCTGGCATTTATGATGGCCTCGGCGGTCTTAGT
CGTTCTCACGAATCCGAGTCTGACCGAACCCTTATCGCCTGACGTCGCCT
TATTTTGTGCATTTAGTTTGTTTGCCTACCAGACGCTAGATGCCATTGAT
GGGAAGCAGGCCCGGCGAACGGGCACGTCCTCACCCCTTGGTCAGCTATT
TGACCACGGCTGCGACGCGCTAAACGCAGTACTAATCTGCACGGTGCTGG
CGGGTGCTTGGCGACTGGGCGATCACCCTTGGTTGATGATGGTCATTTTG
TTCAACATCTTCTTTGCTTTTTTTATGGGGCAGTGGGAGGAGTACCACAC
CGGCTTGATGATGTTGAATAATGGGTACGTTGGTGTCACGGAAGGCCAGG
TCGTGCAGATAGCCATCCTCCTCGTCACGGCCACAGTGGATGCCTCATTT
TGGGAGACGCCACTCCTTCAAATTGGTGGCGTAGGGAAGGGGGAAAGCAG
CGGCGCGGCGGTATTGGTCGTCACTGTCAAGGCAGTGACCATGGCCTGGG
GTTGCCTTCTGACCTTCTGGGTTTCGGCTTGCAGCATCCACCGCGTGCTT
CTCTCGGGACAAGCACGGATCCTACCAACCGAAGAGGTAGGTGGTAAGAT
TTTGGGAAGGAAGGTAGCCGTGCAGCATCTGTTGCCCGTTCTGCTCTCGT
TCATCCTTGGGGGCATGTGGACAGTCGGGCACGGGCAGCACGTCTTCCTC
GACCACCCCGTGGGTGTATTAATGGCGCTGGGCTTGACAATGGCCTACCT
TTCCACGCGCATGATTGTCTGCCACATGGCCAAACAGCCCTTTGGTACGT
CCGAGCTGGCCTTACCCGTCCTTCCTCAACTACTTGTCGTCTTTAACACT
TATTGGAAGCATCTGCCTCAAACCCTCTATGCCGCTATCATCCGACCCAC
GGGCGGCGGTCTATTGCCTCTTTCGGACGTGGTGCTCATGTGGGCTTACG
TGGGTCTAATGGCGGCTGTGTACTTTTACTACACCTTGGGTGCCACAGAG
GATATCTGTTCTCATTTGGGACTGTATTGCTTAAGTATTTACCCGCGACG
GAAGAAGGCGGAGTAAGTCAGTTGAAAAATAAATATGCGTGAGGAAGTGG
AAAAGAGTATAGATGACGGTGAAACTTTATGTAGATAATTGTATACGTAC
GTAAGTAGAAATGAGATAGCGATCGCCGCCACCACAAAAATTTCATCAGG
TGGGGAGGGCGAACATAATTGACCATTTGAAAAATAGTTTGAAGTCGATA
TGAGAAAAAAAATAGCAATAGCAAC
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protein sequence of jgi.p|Nanoce1779_2|24786

>mRNA_4467-protein ID=mRNA_4467-protein|Name=jgi.p|Nanoce1779_2|24786|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MEKTGCQSAAPMKTTATYPFKDRPATSPRRWVLSEVALEGVAAYKYVCGS
STPLDRILNHFWNWAVQLLPLWLAPNLVTLLGLAFMMASAVLVVLTNPSL
TEPLSPDVALFCAFSLFAYQTLDAIDGKQARRTGTSSPLGQLFDHGCDAL
NAVLICTVLAGAWRLGDHPWLMMVILFNIFFAFFMGQWEEYHTGLMMLNN
GYVGVTEGQVVQIAILLVTATVDASFWETPLLQIGGVGKGESSGAAVLVV
TVKAVTMAWGCLLTFWVSACSIHRVLLSGQARILPTEEVGGKILGRKVAV
QHLLPVLLSFILGGMWTVGHGQHVFLDHPVGVLMALGLTMAYLSTRMIVC
HMAKQPFGTSELALPVLPQLLVVFNTYWKHLPQTLYAAIIRPTGGGLLPL
SDVVLMWAYVGLMAAVYFYYTLGATEDICSHLGLYCLSIYPRRKKAE*
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mRNA from alignment at scaffold_10:666655..668525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4467 ID=mRNA_4467|Name=jgi.p|Nanoce1779_2|24786|organism=Nannochloropsis oceanica|type=mRNA|length=1871bp|location=Sequence derived from alignment at scaffold_10:666655..668525- (Nannochloropsis oceanica)
GCTCGATCACTCGCGGACGAAGCACTGCCCCATATTCGCACGCTCCCATC
CCACCCCCTGCTGTACCCACCACCACTTCCTCACACCCAGACACAATACA
GAGGTCGAAGGGTGCAGCGAGGATGGAGAAAACTGGCTGCCAAAGCGCTG
CGCCCATGAAAACGACGGCTACTTATCCCTTCAAAGACAGGCCTGCCACG
AGCCCTCGCAGGTAAGGCTTACGTTCAGGCGGATGCAGGCGGGTTTGTGG
ACGAGAAGTGATCAGCACAGTTGTCGACGAATAAGGGAGGGGAAGTCGCA
AGGGGTTGATTCAATAAGAGAAGTGAGCGGGCAGTAATTGGAGATCTGCA
ACATGCCATGTCCTTCTCCGACATGTCTCCTCACCTTTTACTACACACAC
GTCACAGGTGGGTGCTTTCCGAGGTGGCACTGGAAGGCGTGGCGGCATAC
AAGTACGTATGCGGCTCATCAACGCCCCTGGATAGGATACTTAACCACTT
CTGGAACTGGGCCGTGCAATTGCTTCCTCTTTGGCTAGCGCCCAATCTCG
TGACGCTCCTGGGTCTGGCATTTATGATGGCCTCGGCGGTCTTAGTCGTT
CTCACGAATCCGAGTCTGACCGAACCCTTATCGCCTGACGTCGCCTTATT
TTGTGCATTTAGTTTGTTTGCCTACCAGACGCTAGATGCCATTGATGGGA
AGCAGGCCCGGCGAACGGGCACGTCCTCACCCCTTGGTCAGCTATTTGAC
CACGGCTGCGACGCGCTAAACGCAGTACTAATCTGCACGGTGCTGGCGGG
TGCTTGGCGACTGGGCGATCACCCTTGGTTGATGATGGTCATTTTGTTCA
ACATCTTCTTTGCTTTTTTTATGGGGCAGTGGGAGGAGTACCACACCGGC
TTGATGATGTTGAATAATGGGTACGTTGGTGTCACGGAAGGCCAGGTCGT
GCAGATAGCCATCCTCCTCGTCACGGCCACAGTGGATGCCTCATTTTGGG
AGACGCCACTCCTTCAAATTGGTGGCGTAGGGAAGGGGGAAAGCAGCGGC
GCGGCGGTATTGGTCGTCACTGTCAAGGCAGTGACCATGGCCTGGGGTTG
CCTTCTGACCTTCTGGGTTTCGGCTTGCAGCATCCACCGCGTGCTTCTCT
CGGGACAAGCACGGATCCTACCAACCGAAGAGGTAGGTGGTAAGATTTTG
GGAAGGAAGGTAGCCGTGCAGCATCTGTTGCCCGTTCTGCTCTCGTTCAT
CCTTGGGGGCATGTGGACAGTCGGGCACGGGCAGCACGTCTTCCTCGACC
ACCCCGTGGGTGTATTAATGGCGCTGGGCTTGACAATGGCCTACCTTTCC
ACGCGCATGATTGTCTGCCACATGGCCAAACAGCCCTTTGGTACGTCCGA
GCTGGCCTTACCCGTCCTTCCTCAACTACTTGTCGTCTTTAACACTTATT
GGAAGCATCTGCCTCAAACCCTCTATGCCGCTATCATCCGACCCACGGGC
GGCGGTCTATTGCCTCTTTCGGACGTGGTGCTCATGTGGGCTTACGTGGG
TCTAATGGCGGCTGTGTACTTTTACTACACCTTGGGTGCCACAGAGGATA
TCTGTTCTCATTTGGGACTGTATTGCTTAAGTATTTACCCGCGACGGAAG
AAGGCGGAGTAAGTCAGTTGAAAAATAAATATGCGTGAGGAAGTGGAAAA
GAGTATAGATGACGGTGAAACTTTATGTAGATAATTGTATACGTACGTAA
GTAGAAATGAGATAGCGATCGCCGCCACCACAAAAATTTCATCAGGTGGG
GAGGGCGAACATAATTGACCATTTGAAAAATAGTTTGAAGTCGATATGAG
AAAAAAAATAGCAATAGCAAC
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Coding sequence (CDS) from alignment at scaffold_10:666655..668525-

>mRNA_4467 ID=mRNA_4467|Name=jgi.p|Nanoce1779_2|24786|organism=Nannochloropsis oceanica|type=CDS|length=2688bp|location=Sequence derived from alignment at scaffold_10:666655..668525- (Nannochloropsis oceanica)
GTGGGTGCTTTCCGAGGTGGCACTGGAAGGCGTGGCGGCATACAAGTACG
TATGCGGCTCATCAACGCCCCTGGATAGGATACTTAACCACTTCTGGAAC
TGGGCCGTGCAATTGCTTCCTCTTTGGCTAGCGCCCAATCTCGTGACGCT
CCTGGGTCTGGCATTTATGATGGCCTCGGCGGTCTTAGTCGTTCTCACGA
ATCCGAGTCTGACCGAACCCTTATCGCCTGACGTCGCCTTATTTTGTGCA
TTTAGTTTGTTTGCCTACCAGACGCTAGATGCCATTGATGGGAAGCAGGC
CCGGCGAACGGGCACGTCCTCACCCCTTGGTCAGCTATTTGACCACGGCT
GCGACGCGCTAAACGCAGTACTAATCTGCACGGTGCTGGCGGGTGCTTGG
CGACTGGGCGATCACCCTTGGTTGATGATGGTCATTTTGTTCAACATCTT
CTTTGCTTTTTTTATGGGGCAGTGGGAGGAGTACCACACCGGCTTGATGA
TGTTGAATAATGGGTACGTTGGTGTCACGGAAGGCCAGGTCGTGCAGATA
GCCATCCTCCTCGTCACGGCCACAGTGGATGCCTCATTTTGGGAGACGCC
ACTCCTTCAAATTGGTGGCGTAGGGAAGGGGGAAAGCAGCGGCGCGGCGG
TATTGGTCGTCACTGTCAAGGCAGTGACCATGGCCTGGGGTTGCCTTCTG
ACCTTCTGGGTTTCGGCTTGCAGCATCCACCGCGTGCTTCTCTCGGGACA
AGCACGGATCCTACCAACCGAAGAGGTAGGTGGTAAGATTTTGGGAAGGA
AGGTAGCCGTGCAGCATCTGTTGCCCGTTCTGCTCTCGTTCATCCTTGGG
GGCATGTGGACAGTCGGGCACGGGCAGCACGTCTTCCTCGACCACCCCGT
GGGTGTATTAATGGCGCTGGGCTTGACAATGGCCTACCTTTCCACGCGCA
TGATTGTCTGCCACATGGCCAAACAGCCCTTTGGTACGTCCGAGCTGGCC
TTACCCGTCCTTCCTCAACTACTTGTCGTCTTTAACACTTATTGGAAGCA
TCTGCCTCAAACCCTCTATGCCGCTATCATCCGACCCACGGGCGGCGGTC
TATTGCCTCTTTCGGACGTGGTGCTCATGTGGGCTTACGTGGGTCTAATG
GCGGCTGTGTACTTTTACTACACCTTGGGTGCCACAGAGGATATCTGTTC
TCATTTGGGACTGTATTGCTTAAGTATTTACCCGCGACGGAAGAAGGCGG
AGTAAATGGAGAAAACTGGCTGCCAAAGCGCTGCGCCCATGAAAACGACG
GCTACTTATCCCTTCAAAGACAGGCCTGCCACGAGCCCTCGCAGGTGGGT
GCTTTCCGAGGTGGCACTGGAAGGCGTGGCGGCATACAAGTACGTATGCG
GCTCATCAACGCCCCTGGATAGGATACTTAACCACTTCTGGAACTGGGCC
GTGCAATTGCTTCCTCTTTGGCTAGCGCCCAATCTCGTGACGCTCCTGGG
TCTGGCATTTATGATGGCCTCGGCGGTCTTAGTCGTTCTCACGAATCCGA
GTCTGACCGAACCCTTATCGCCTGACGTCGCCTTATTTTGTGCATTTAGT
TTGTTTGCCTACCAGACGCTAGATGCCATTGATGGGAAGCAGGCCCGGCG
AACGGGCACGTCCTCACCCCTTGGTCAGCTATTTGACCACGGCTGCGACG
CGCTAAACGCAGTACTAATCTGCACGGTGCTGGCGGGTGCTTGGCGACTG
GGCGATCACCCTTGGTTGATGATGGTCATTTTGTTCAACATCTTCTTTGC
TTTTTTTATGGGGCAGTGGGAGGAGTACCACACCGGCTTGATGATGTTGA
ATAATGGGTACGTTGGTGTCACGGAAGGCCAGGTCGTGCAGATAGCCATC
CTCCTCGTCACGGCCACAGTGGATGCCTCATTTTGGGAGACGCCACTCCT
TCAAATTGGTGGCGTAGGGAAGGGGGAAAGCAGCGGCGCGGCGGTATTGG
TCGTCACTGTCAAGGCAGTGACCATGGCCTGGGGTTGCCTTCTGACCTTC
TGGGTTTCGGCTTGCAGCATCCACCGCGTGCTTCTCTCGGGACAAGCACG
GATCCTACCAACCGAAGAGGTAGGTGGTAAGATTTTGGGAAGGAAGGTAG
CCGTGCAGCATCTGTTGCCCGTTCTGCTCTCGTTCATCCTTGGGGGCATG
TGGACAGTCGGGCACGGGCAGCACGTCTTCCTCGACCACCCCGTGGGTGT
ATTAATGGCGCTGGGCTTGACAATGGCCTACCTTTCCACGCGCATGATTG
TCTGCCACATGGCCAAACAGCCCTTTGGTACGTCCGAGCTGGCCTTACCC
GTCCTTCCTCAACTACTTGTCGTCTTTAACACTTATTGGAAGCATCTGCC
TCAAACCCTCTATGCCGCTATCATCCGACCCACGGGCGGCGGTCTATTGC
CTCTTTCGGACGTGGTGCTCATGTGGGCTTACGTGGGTCTAATGGCGGCT
GTGTACTTTTACTACACCTTGGGTGCCACAGAGGATATCTGTTCTCATTT
GGGACTGTATTGCTTAAGTATTTACCCGCGACGGAAGAAGGCGGAGTAAA
TGGAGAAAACTGGCTGCCAAAGCGCTGCGCCCATGAAAACGACGGCTACT
TATCCCTTCAAAGACAGGCCTGCCACGAGCCCTCGCAG
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Synonyms
Publications