jgi.p|Nanoce1779_2|589211, mRNA_4466 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589211
Unique Name	mRNA_4466
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2641
Alignment location	scaffold_10:664014..666654 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589297
Track	FilteredModels2
ProteinId	589211

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:664014..666654 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589211	gene_4466	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589211	mRNA_4466-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4466	CDS_4466	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:664014..666654+
coding sequence from alignment at scaffold_10:664014..666654+

mRNA sequence

>mRNA_4466 ID=mRNA_4466|Name=jgi.p|Nanoce1779_2|589211|organism=Nannochloropsis oceanica|type=mRNA|length=2641bp
AGGTTGTTTTATCTTGAGCGCGTACGCCATAGCCTTGGTTGCATACTGGG
GCCTGATGGACGTTGTGACAGCGGAGGAGGAGATACAAGGAGCTGTCCCG
CGCAGCTCAGACAGAGTAAGTAATAGGATGCTTAGAGCCCCGCATCATTG
GATGCCAGTGGGGAAGAGGACAAGGCGCATGCTGTGTGCATGAGGATTGC
GGCGTTCTAGCGTGTGGGGATGACACGTATGAATGCCTTTTTATTTGGTC
GCTGTATGCCTGCAGCATAAGACAAGTAGGGGGTGAATGACATGCATCGC
ACGGATAAAAGCGCTCTCGCGCCTCAGACTCCTTCAGCAACTTTTCTCAT
TTCCTGCCAAACACTCGCACACTCTCTTTACCCCACTGTAAAACCAGACA
ATGGACGAAGAATTGGAAGCCGCGCCAGTCGGCCTTGGCCTCAGTAGTGG
CAGTGACAGCAAACCCTCCACGACGGCTGCCAGTGTGTTGGGTTTCGTCA
AGGCAACCTCCAGCGGCGAGGCCTCGGAAGAGGAAGGCAAGGAGCGAAAG
AAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAGGAAAAGAAGGAGAG
AAAGGAGAAAAAGGAGAAAAAGGAAAAGAAGCGCAGCCGCAAGGAAGGGA
GCCCCGACGATGAGGGGGATGGCGATGATTGGCGGGATCGCCAACGGCGG
CGACGTACCCCCAGCCCGCGAGGCCGTGATAATGGCAGGCGAAGCCCACC
CGTCAGCAGGTCGCGTGGCCGTTCTCGTTCGCCGCCTCGAGGAGGAGGAG
GATCTTACAGGAACCGAGGGCGCTCCCGGACACCGCCTGGACGGTACGGC
GGCCGAAAGGGCCGTTCGAGGAGTCGTTCCCGTTCCCCAATCTCTTCCTC
TCGGCACCGGAAGAAGTCGCGCTCGGAGGATGGGGAAGAAAGCAGCAATG
GTGCGAAAAAAGAGGAGTTACCTCCGGGAGTGGTGGACATAATGATTGAA
GGAGGGATGGGAGGGCCTCTGCCCACCCTGCAGGAAATGCTGAGTCAAAA
CCGAGGATTGGGCGTGATGCAGGCCCTCCAGAAAATCGAGCAGACCAAGC
AACTTCGAGTCTTTGCCACCCAAGCCGCGGCACAGGCGCAGTTGGTTCTG
AACAACACCTTGGCAGCGGCGCGGCTGGCAGCTGCCTCGCCCTTTACGCT
TGTGGATTCCACAAAACCCGCCCGTCAGCTTTACGTCGGGAATTTGCCCG
TGGGTGTGTTGGGACCGCAGTTGGCCGAGTTTATAAGCGCGGCAATGCAG
CAGATGAAACTGACCTTGGGGGTGGGGAGTCCAGTAGTGGGGATTTGGAT
GAGCCCCGATGGCAGGTTTGCCCTGGTGGATTTTCGGTCGTTGGAGGAAG
CCAACCGCGCCCTGGCTCTGGACAAGCTCCAGGTGGGTGGGGGTGCGATG
CAGCTCCGTGTGGGCCGTCCGAAGGAATACCAAGAATTTTATGAGACGCT
GGCCAAAGGCGGAAGTGCTGCCGATGCCGCCAGTACGGGAGCTGCAGCTG
CTCCTCCCGTCACGTCGACCGCCACTGCATTCGGCACAGGTCAATCCACC
ACAGCAGTCGCAGCTGTCGCCCCGACGCCCTCCAGCACGGTCGGGGGAAT
GCCCGTCATTCACACGACAGGGTCTGCCGCAGCCGTAGTGGGACCGACGC
CTGTTCAAACCCACGGCCACTTTTTGATGTTGGCGAATGTCCCAAACGTG
CTGGGGGAGCTGGACGTCAAAGCGCTCCTTGATCCGTTTGGGAAACTCAT
GAGTTTTAACATGCTTAAGGACAAGGAGGGCCTGTCGAAGGGCATCGCCA
TCTTTGAGTACGAAGACCGGGCGCAGGCAGGGTTGGCATTGAAGGGCTTG
GCAGGACTTGACTTGGGCGGGAAGCGATTGAGCATCCAGGAAATCCCAGC
CCATCAAGCCACTATGTTGCTCAAGCCGGTGGCGACTGCCAGTATGGGAA
CCGGTAGGCCTGGCGAGGGAGGAGGCGGTTCGTCTGTGATTCGTTTACAG
AATATGCTGGCGGACGACATGGATGCGGAGGAGGTGGAGGAGATCAAGGA
AGAAGTGACCGACGAATGTCGAAAGTACGGCAATGTGGTGTCTTTGGAAA
TGGACACGGCACAGGGTTTGATTTTTGTGGAGTTTGGGGACGTTCGGGCA
TCGAAACGTGCCCAAGCCAAGTTGGAAGGTCGGTCGTTTGATGGGCGGAC
AGTGAAGTGCCGGTATTTTCCTCTGAAGGCTTATAGGAGCAAGGATTTGC
AGGCCGAGCCCCTGCCCGAAGAGGAGCCTGTGGTGGAGTCCGAGGACGGT
GCGGTGGAAAAGGCGAAGGAGGAGGATACGGCAATAGCAGAGTTGTCTGT
CACAGGAGAAAGAGTGGCGGGTGTAGGCGGGGAGGTGGAGGCCACACCAG
GAGATGGAGGGAGGGTTGGAGAAGGAGACTCGTCTTCTTTACCGCCGCCG
TCGCCCATAGCTGTACCTGATGCGGTCGAAGAAGATTTAGACTAAGAGTT
GGGGATCAAAAGATGAAGCAGATGTAGGGAAGGGTTAACCATTACAAAAG
ACATGAGCATACCTCGTGAATATTCGGAAAGAATAGTGTAC

protein sequence of jgi.p|Nanoce1779_2|589211

>mRNA_4466-protein ID=mRNA_4466-protein|Name=jgi.p|Nanoce1779_2|589211|organism=Nannochloropsis oceanica|type=polypeptide|length=715bp
MDEELEAAPVGLGLSSGSDSKPSTTAASVLGFVKATSSGEASEEEGKERK
KKKEKKEKKEKKEKKERKEKKEKKEKKRSRKEGSPDDEGDGDDWRDRQRR
RRTPSPRGRDNGRRSPPVSRSRGRSRSPPRGGGGSYRNRGRSRTPPGRYG
GRKGRSRSRSRSPISSSRHRKKSRSEDGEESSNGAKKEELPPGVVDIMIE
GGMGGPLPTLQEMLSQNRGLGVMQALQKIEQTKQLRVFATQAAAQAQLVL
NNTLAAARLAAASPFTLVDSTKPARQLYVGNLPVGVLGPQLAEFISAAMQ
QMKLTLGVGSPVVGIWMSPDGRFALVDFRSLEEANRALALDKLQVGGGAM
QLRVGRPKEYQEFYETLAKGGSAADAASTGAAAAPPVTSTATAFGTGQST
TAVAAVAPTPSSTVGGMPVIHTTGSAAAVVGPTPVQTHGHFLMLANVPNV
LGELDVKALLDPFGKLMSFNMLKDKEGLSKGIAIFEYEDRAQAGLALKGL
AGLDLGGKRLSIQEIPAHQATMLLKPVATASMGTGRPGEGGGGSSVIRLQ
NMLADDMDAEEVEEIKEEVTDECRKYGNVVSLEMDTAQGLIFVEFGDVRA
SKRAQAKLEGRSFDGRTVKCRYFPLKAYRSKDLQAEPLPEEEPVVESEDG
AVEKAKEEDTAIAELSVTGERVAGVGGEVEATPGDGGRVGEGDSSSLPPP
SPIAVPDAVEEDLD*

mRNA from alignment at scaffold_10:664014..666654+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4466 ID=mRNA_4466|Name=jgi.p|Nanoce1779_2|589211|organism=Nannochloropsis oceanica|type=mRNA|length=2641bp|location=Sequence derived from alignment at scaffold_10:664014..666654+ (Nannochloropsis oceanica)
AGGTTGTTTTATCTTGAGCGCGTACGCCATAGCCTTGGTTGCATACTGGG
GCCTGATGGACGTTGTGACAGCGGAGGAGGAGATACAAGGAGCTGTCCCG
CGCAGCTCAGACAGAGTAAGTAATAGGATGCTTAGAGCCCCGCATCATTG
GATGCCAGTGGGGAAGAGGACAAGGCGCATGCTGTGTGCATGAGGATTGC
GGCGTTCTAGCGTGTGGGGATGACACGTATGAATGCCTTTTTATTTGGTC
GCTGTATGCCTGCAGCATAAGACAAGTAGGGGGTGAATGACATGCATCGC
ACGGATAAAAGCGCTCTCGCGCCTCAGACTCCTTCAGCAACTTTTCTCAT
TTCCTGCCAAACACTCGCACACTCTCTTTACCCCACTGTAAAACCAGACA
ATGGACGAAGAATTGGAAGCCGCGCCAGTCGGCCTTGGCCTCAGTAGTGG
CAGTGACAGCAAACCCTCCACGACGGCTGCCAGTGTGTTGGGTTTCGTCA
AGGCAACCTCCAGCGGCGAGGCCTCGGAAGAGGAAGGCAAGGAGCGAAAG
AAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAGGAAAAGAAGGAGAG
AAAGGAGAAAAAGGAGAAAAAGGAAAAGAAGCGCAGCCGCAAGGAAGGGA
GCCCCGACGATGAGGGGGATGGCGATGATTGGCGGGATCGCCAACGGCGG
CGACGTACCCCCAGCCCGCGAGGCCGTGATAATGGCAGGCGAAGCCCACC
CGTCAGCAGGTCGCGTGGCCGTTCTCGTTCGCCGCCTCGAGGAGGAGGAG
GATCTTACAGGAACCGAGGGCGCTCCCGGACACCGCCTGGACGGTACGGC
GGCCGAAAGGGCCGTTCGAGGAGTCGTTCCCGTTCCCCAATCTCTTCCTC
TCGGCACCGGAAGAAGTCGCGCTCGGAGGATGGGGAAGAAAGCAGCAATG
GTGCGAAAAAAGAGGAGTTACCTCCGGGAGTGGTGGACATAATGATTGAA
GGAGGGATGGGAGGGCCTCTGCCCACCCTGCAGGAAATGCTGAGTCAAAA
CCGAGGATTGGGCGTGATGCAGGCCCTCCAGAAAATCGAGCAGACCAAGC
AACTTCGAGTCTTTGCCACCCAAGCCGCGGCACAGGCGCAGTTGGTTCTG
AACAACACCTTGGCAGCGGCGCGGCTGGCAGCTGCCTCGCCCTTTACGCT
TGTGGATTCCACAAAACCCGCCCGTCAGCTTTACGTCGGGAATTTGCCCG
TGGGTGTGTTGGGACCGCAGTTGGCCGAGTTTATAAGCGCGGCAATGCAG
CAGATGAAACTGACCTTGGGGGTGGGGAGTCCAGTAGTGGGGATTTGGAT
GAGCCCCGATGGCAGGTTTGCCCTGGTGGATTTTCGGTCGTTGGAGGAAG
CCAACCGCGCCCTGGCTCTGGACAAGCTCCAGGTGGGTGGGGGTGCGATG
CAGCTCCGTGTGGGCCGTCCGAAGGAATACCAAGAATTTTATGAGACGCT
GGCCAAAGGCGGAAGTGCTGCCGATGCCGCCAGTACGGGAGCTGCAGCTG
CTCCTCCCGTCACGTCGACCGCCACTGCATTCGGCACAGGTCAATCCACC
ACAGCAGTCGCAGCTGTCGCCCCGACGCCCTCCAGCACGGTCGGGGGAAT
GCCCGTCATTCACACGACAGGGTCTGCCGCAGCCGTAGTGGGACCGACGC
CTGTTCAAACCCACGGCCACTTTTTGATGTTGGCGAATGTCCCAAACGTG
CTGGGGGAGCTGGACGTCAAAGCGCTCCTTGATCCGTTTGGGAAACTCAT
GAGTTTTAACATGCTTAAGGACAAGGAGGGCCTGTCGAAGGGCATCGCCA
TCTTTGAGTACGAAGACCGGGCGCAGGCAGGGTTGGCATTGAAGGGCTTG
GCAGGACTTGACTTGGGCGGGAAGCGATTGAGCATCCAGGAAATCCCAGC
CCATCAAGCCACTATGTTGCTCAAGCCGGTGGCGACTGCCAGTATGGGAA
CCGGTAGGCCTGGCGAGGGAGGAGGCGGTTCGTCTGTGATTCGTTTACAG
AATATGCTGGCGGACGACATGGATGCGGAGGAGGTGGAGGAGATCAAGGA
AGAAGTGACCGACGAATGTCGAAAGTACGGCAATGTGGTGTCTTTGGAAA
TGGACACGGCACAGGGTTTGATTTTTGTGGAGTTTGGGGACGTTCGGGCA
TCGAAACGTGCCCAAGCCAAGTTGGAAGGTCGGTCGTTTGATGGGCGGAC
AGTGAAGTGCCGGTATTTTCCTCTGAAGGCTTATAGGAGCAAGGATTTGC
AGGCCGAGCCCCTGCCCGAAGAGGAGCCTGTGGTGGAGTCCGAGGACGGT
GCGGTGGAAAAGGCGAAGGAGGAGGATACGGCAATAGCAGAGTTGTCTGT
CACAGGAGAAAGAGTGGCGGGTGTAGGCGGGGAGGTGGAGGCCACACCAG
GAGATGGAGGGAGGGTTGGAGAAGGAGACTCGTCTTCTTTACCGCCGCCG
TCGCCCATAGCTGTACCTGATGCGGTCGAAGAAGATTTAGACTAAGAGTT
GGGGATCAAAAGATGAAGCAGATGTAGGGAAGGGTTAACCATTACAAAAG
ACATGAGCATACCTCGTGAATATTCGGAAAGAATAGTGTAC

Coding sequence (CDS) from alignment at scaffold_10:664014..666654+

>mRNA_4466 ID=mRNA_4466|Name=jgi.p|Nanoce1779_2|589211|organism=Nannochloropsis oceanica|type=CDS|length=2145bp|location=Sequence derived from alignment at scaffold_10:664014..666654+ (Nannochloropsis oceanica)
ATGGACGAAGAATTGGAAGCCGCGCCAGTCGGCCTTGGCCTCAGTAGTGG
CAGTGACAGCAAACCCTCCACGACGGCTGCCAGTGTGTTGGGTTTCGTCA
AGGCAACCTCCAGCGGCGAGGCCTCGGAAGAGGAAGGCAAGGAGCGAAAG
AAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAGGAAAAGAAGGAGAG
AAAGGAGAAAAAGGAGAAAAAGGAAAAGAAGCGCAGCCGCAAGGAAGGGA
GCCCCGACGATGAGGGGGATGGCGATGATTGGCGGGATCGCCAACGGCGG
CGACGTACCCCCAGCCCGCGAGGCCGTGATAATGGCAGGCGAAGCCCACC
CGTCAGCAGGTCGCGTGGCCGTTCTCGTTCGCCGCCTCGAGGAGGAGGAG
GATCTTACAGGAACCGAGGGCGCTCCCGGACACCGCCTGGACGGTACGGC
GGCCGAAAGGGCCGTTCGAGGAGTCGTTCCCGTTCCCCAATCTCTTCCTC
TCGGCACCGGAAGAAGTCGCGCTCGGAGGATGGGGAAGAAAGCAGCAATG
GTGCGAAAAAAGAGGAGTTACCTCCGGGAGTGGTGGACATAATGATTGAA
GGAGGGATGGGAGGGCCTCTGCCCACCCTGCAGGAAATGCTGAGTCAAAA
CCGAGGATTGGGCGTGATGCAGGCCCTCCAGAAAATCGAGCAGACCAAGC
AACTTCGAGTCTTTGCCACCCAAGCCGCGGCACAGGCGCAGTTGGTTCTG
AACAACACCTTGGCAGCGGCGCGGCTGGCAGCTGCCTCGCCCTTTACGCT
TGTGGATTCCACAAAACCCGCCCGTCAGCTTTACGTCGGGAATTTGCCCG
TGGGTGTGTTGGGACCGCAGTTGGCCGAGTTTATAAGCGCGGCAATGCAG
CAGATGAAACTGACCTTGGGGGTGGGGAGTCCAGTAGTGGGGATTTGGAT
GAGCCCCGATGGCAGGTTTGCCCTGGTGGATTTTCGGTCGTTGGAGGAAG
CCAACCGCGCCCTGGCTCTGGACAAGCTCCAGGTGGGTGGGGGTGCGATG
CAGCTCCGTGTGGGCCGTCCGAAGGAATACCAAGAATTTTATGAGACGCT
GGCCAAAGGCGGAAGTGCTGCCGATGCCGCCAGTACGGGAGCTGCAGCTG
CTCCTCCCGTCACGTCGACCGCCACTGCATTCGGCACAGGTCAATCCACC
ACAGCAGTCGCAGCTGTCGCCCCGACGCCCTCCAGCACGGTCGGGGGAAT
GCCCGTCATTCACACGACAGGGTCTGCCGCAGCCGTAGTGGGACCGACGC
CTGTTCAAACCCACGGCCACTTTTTGATGTTGGCGAATGTCCCAAACGTG
CTGGGGGAGCTGGACGTCAAAGCGCTCCTTGATCCGTTTGGGAAACTCAT
GAGTTTTAACATGCTTAAGGACAAGGAGGGCCTGTCGAAGGGCATCGCCA
TCTTTGAGTACGAAGACCGGGCGCAGGCAGGGTTGGCATTGAAGGGCTTG
GCAGGACTTGACTTGGGCGGGAAGCGATTGAGCATCCAGGAAATCCCAGC
CCATCAAGCCACTATGTTGCTCAAGCCGGTGGCGACTGCCAGTATGGGAA
CCGGTAGGCCTGGCGAGGGAGGAGGCGGTTCGTCTGTGATTCGTTTACAG
AATATGCTGGCGGACGACATGGATGCGGAGGAGGTGGAGGAGATCAAGGA
AGAAGTGACCGACGAATGTCGAAAGTACGGCAATGTGGTGTCTTTGGAAA
TGGACACGGCACAGGGTTTGATTTTTGTGGAGTTTGGGGACGTTCGGGCA
TCGAAACGTGCCCAAGCCAAGTTGGAAGGTCGGTCGTTTGATGGGCGGAC
AGTGAAGTGCCGGTATTTTCCTCTGAAGGCTTATAGGAGCAAGGATTTGC
AGGCCGAGCCCCTGCCCGAAGAGGAGCCTGTGGTGGAGTCCGAGGACGGT
GCGGTGGAAAAGGCGAAGGAGGAGGATACGGCAATAGCAGAGTTGTCTGT
CACAGGAGAAAGAGTGGCGGGTGTAGGCGGGGAGGTGGAGGCCACACCAG
GAGATGGAGGGAGGGTTGGAGAAGGAGACTCGTCTTCTTTACCGCCGCCG
TCGCCCATAGCTGTACCTGATGCGGTCGAAGAAGATTTAGACTAA

Synonyms

Publications