jgi.p|Nanoce1779_2|589206, mRNA_4464 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589206
Unique Name	mRNA_4464
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1287
Alignment location	scaffold_10:660502..662139 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589292
Track	FilteredModels2
ProteinId	589206

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:660502..662139 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589206	gene_4464	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589206	mRNA_4464-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4464	CDS_4464	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:660502..662139+
coding sequence from alignment at scaffold_10:660502..662139+

mRNA sequence

>mRNA_4464 ID=mRNA_4464|Name=jgi.p|Nanoce1779_2|589206|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp
ACAGTAGGTAGCAACTACCAGGTCACATCCCGCAACGTAGCCATGGAGAT
GAACAAGGATGAAGCGGAGCGCTGCCTGGAGCTAGGGCGGAAGTTTATGC
GGGAGGGGTCCCATGCCAAGGCCGTCAAGTTCCTGGACAAGTCCCTCAAG
CTGTACCCTTTGCCAGGCGTCAAGGAGCTCAAAACACGGGCTGAAGCCGA
GGGCCAACGGGCGACAAGCAGCACCAATCAGAGCGGGAGTGGGAGCAGCA
GTGCAAATGCGGGCGGGGGTAGTGGGCAAGTGCCTCGGCGACGACCCTCT
GCTGACGGAAAGAGCACAAGCTATAGTAGAAGTAGTGGCGGGGGGGATGC
CAGTGTGGGCCAGAACGGACGGCCGTACACGGAGGAGGAGGTGGTGGCCT
GCCGTGCCATCATCCATTCGAAGAAGAAAGGCCACTATGAGGTCCTGAGT
ATCTCTCGCACTGCCACTGACGACGAGATCAAGAAGTCTTACAGGAAGTT
GGCCTTGAGATTCCATCCCGACAAGAATGCAGCCCCGCAGGCAGACGAGG
CGTTCAAGGCTATCAGCACCGCCTTTCAAGTGCTGAGTGACCCTGACAAG
CGGCGATCATACGATCAGTTCGGGGATGACGAAGGGCCAGGGGCCGGAGG
AGGGCAAGCACACCCCTTCCGACACGCGGACGTGTCGCCCGAGGAGATAT
TTAACATGTTCTTCGGCATGAACGGCGGAGGGATGGGTGGAGGGCGTCCG
GGCAATTTCCGCGTCTATCGTTCCCAACAAGAAGGCAACCCTTTTTCCCG
TTACCAGCAGCAGCAGCAGCAGCAGCATCAGCGACAAGGTCAACAGCAAA
ATCCGCTTGGCGCCATGGCCCAATTCCTGCAAATGCTTCCCGTCCTCCTT
CTCCTTTTTCTCTCGCTCTTCTCATTCCCCCAAGAGAGCGAGCGGGCTTT
CTCATTGAGCCGTACAGATCGGCACCCCATGCAGCGCGCCACATCAATGG
ATCACATCCTGCCCAATATTCCCTACTTCGTGGGCAACACCTTTTCCCGA
GACCATGCACGGGACCGGCGGCGCCTCTTCCAGGTGGAGCGGGAAGTGCA
GCAGGCCTACTTGTACGACCTCCAGCGGCAGTGCGAGGGCCAGAAGCAGG
ACAAGGCTCGCAGGGTACAAGCGGCGAGGAGGGTTTTCAATGCGGAGGAT
AGGGCAAGAAGGATGGCCGAGGCGGACGAGATGCCCCTGGAGTCATGCCG
GTTGTTCCAGGAGGCGACCCGGTTGCTGTGAGTAGTA

protein sequence of jgi.p|Nanoce1779_2|589206

>mRNA_4464-protein ID=mRNA_4464-protein|Name=jgi.p|Nanoce1779_2|589206|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MEMNKDEAERCLELGRKFMREGSHAKAVKFLDKSLKLYPLPGVKELKTRA
EAEGQRATSSTNQSGSGSSSANAGGGSGQVPRRRPSADGKSTSYSRSSGG
GDASVGQNGRPYTEEEVVACRAIIHSKKKGHYEVLSISRTATDDEIKKSY
RKLALRFHPDKNAAPQADEAFKAISTAFQVLSDPDKRRSYDQFGDDEGPG
AGGGQAHPFRHADVSPEEIFNMFFGMNGGGMGGGRPGNFRVYRSQQEGNP
FSRYQQQQQQQHQRQGQQQNPLGAMAQFLQMLPVLLLLFLSLFSFPQESE
RAFSLSRTDRHPMQRATSMDHILPNIPYFVGNTFSRDHARDRRRLFQVER
EVQQAYLYDLQRQCEGQKQDKARRVQAARRVFNAEDRARRMAEADEMPLE
SCRLFQEATRLL*

mRNA from alignment at scaffold_10:660502..662139+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4464 ID=mRNA_4464|Name=jgi.p|Nanoce1779_2|589206|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp|location=Sequence derived from alignment at scaffold_10:660502..662139+ (Nannochloropsis oceanica)
ACAGTAGGTAGCAACTACCAGGTCACATCCCGCAACGTAGCCATGGAGAT
GAACAAGGATGAAGCGGAGCGCTGCCTGGAGCTAGGGCGGAAGTTTATGC
GGGAGGGGTCCCATGCCAAGGCCGTCAAGTTCCTGGACAAGTCCCTCAAG
CTGTACCCTTTGCCAGGCGTCAAGGAGCTCAAAACACGGGCTGAAGCCGA
GGGCCAACGGGCGACAAGCAGCACCAATCAGAGCGGGAGTGGGAGCAGCA
GTGCAAATGCGGGCGGGGGTAGTGGGCAAGTGCCTCGGCGACGACCCTCT
GCTGACGGAAAGAGCACAAGCTATAGTAGAAGTAGTGGCGGGGGGGATGC
CAGTGTGGGCCAGAACGGACGGCCGTACACGGAGGAGGAGGTGGTGGCCT
GCCGTGCCATCATCCATTCGAAGAAGAAAGGCCACTATGAGGTCCTGAGT
ATCTCTCGCACTGCCACTGACGACGAGATCAAGAAGTCTTACAGGAAGTT
GGCCTTGAGATTCCATCCCGACAAGAATGCAGCCCCGCAGGCAGACGAGG
CGTTCAAGGTACGAAGGGACGCAAGTGTAGAACTGACGTTACGTTGATTA
AGTCGCCCGGTGTCAGACCGCCTTCTTTATGTTCCCATCATCATGGATAT
ATGAAACGCGCTGTATGCACGCTGACGTTCCTCGCTTTCTCCTGTCTGTC
CCACCTCCAAACCAGGCTATCAGCACCGCCTTTCAAGTGCTGAGTGACCC
TGACAAGCGGCGATCATACGATCAGTTCGGGGATGACGAAGGGCCAGGGG
CCGGAGGAGGGCAAGCACACCCCTTCCGACACGCGGACGTGTCGCCCGAG
GAGATATTTAACATGTTCTTCGGCATGAACGGCGGAGGGATGGGTGGAGG
GCGTCCGGGCAATTTCCGCGTCTATCGTTCCCAACAAGAAGGCAACCCTT
TTTCCCGTTACCAGCAGCAGCAGCAGCAGCAGCATCAGCGACAAGGTCAA
CAGCAAAATCCGCTTGGGTACGTTGTAAGCGGAGTCAGGGGAGGGAGGAC
GGGGAGGAGTGGGAAAGGAAGGAAGGGACGAGAGGAACGGGAGGACATGC
GGATCGCATGTCTCGTCTCATTTGCAAAAACGGGTCAGTATATGTTTCCT
TATTTCACCGCCCTATTTTATTCCTTTTCACCATTACCTCCCTTCTTCTC
TTCCCACACAGCGCCATGGCCCAATTCCTGCAAATGCTTCCCGTCCTCCT
TCTCCTTTTTCTCTCGCTCTTCTCATTCCCCCAAGAGAGCGAGCGGGCTT
TCTCATTGAGCCGTACAGATCGGCACCCCATGCAGCGCGCCACATCAATG
GATCACATCCTGCCCAATATTCCCTACTTCGTGGGCAACACCTTTTCCCG
AGACCATGCACGGGACCGGCGGCGCCTCTTCCAGGTGGAGCGGGAAGTGC
AGCAGGCCTACTTGTACGACCTCCAGCGGCAGTGCGAGGGCCAGAAGCAG
GACAAGGCTCGCAGGGTACAAGCGGCGAGGAGGGTTTTCAATGCGGAGGA
TAGGGCAAGAAGGATGGCCGAGGCGGACGAGATGCCCCTGGAGTCATGCC
GGTTGTTCCAGGAGGCGACCCGGTTGCTGTGAGTAGTA

Coding sequence (CDS) from alignment at scaffold_10:660502..662139+

>mRNA_4464 ID=mRNA_4464|Name=jgi.p|Nanoce1779_2|589206|organism=Nannochloropsis oceanica|type=CDS|length=3717bp|location=Sequence derived from alignment at scaffold_10:660502..662139+ (Nannochloropsis oceanica)
ATGGAGATGAACAAGGATGAAGCGGAGCGCTGCCTGGAGCTAGGGCGGAA
GTTTATGCGGGAGGGGTCCCATGCCAAGGCCGTCAAGTTCCTGGACAAGT
CCCTCAAGCTGTACCCTTTGCCAGGCGTCAAGGAGCTCAAAACACGGGCT
GAAGCCGAGGGCCAACGGGCGACAAGCAGCACCAATCAGAGCGGGAGTGG
GAGCAGCAGTGCAAATGCGGGCGGGGGTAGTGGGCAAGTGCCTCGGCGAC
GACCCTCTGCTGACGGAAAGAGCACAAGCTATAGTAGAAGTAGTGGCGGG
GGGGATGCCAGTGTGGGCCAGAACGGACGGCCGTACACGGAGGAGGAGGT
GGTGGCCTGCCGTGCCATCATCCATTCGAAGAAGAAAGGCCACTATGAGG
TCCTGAGTATCTCTCGCACTGCCACTGACGACGAGATCAAGAAGTCTTAC
AGGAAGTTGGCCTTGAGATTCCATCCCGACAAGAATGCAGCCCCGCAGGC
AGACGAGGCGTTCAAGGCTATCAGCACCGCCTTTCAAGTGCTGAGTGACC
CTGACAAGCGGCGATCATACGATCAGTTCGGGGATGACGAAGGGCCAGGG
GCCGGAGGAGGGCAAGCACACCCCTTCCGACACGCGGACGTGTCGCCCGA
GGAGATATTTAACATGTTCTTCGGCATGAACGGCGGAGGGATGGGTGGAG
GGCGTCCGGGCAATTTCCGCGTCTATCGTTCCCAACAAGAAGGCAACCCT
TTTTCCCGTTACCAGCAGCAGCAGCAGCAGCAGCATCAGCGACAAGGTCA
ACAGCAAAATCCGCTTGGCGCCATGGCCCAATTCCTGCAAATGCTTCCCG
TCCTCCTTCTCCTTTTTCTCTCGCTCTTCTCATTCCCCCAAGAGAGCGAG
CGGGCTTTCTCATTGAGCCGTACAGATCGGCACCCCATGCAGCGCGCCAC
ATCAATGGATCACATCCTGCCCAATATTCCCTACTTCGTGGGCAACACCT
TTTCCCGAGACCATGCACGGGACCGGCGGCGCCTCTTCCAGGTGGAGCGG
GAAGTGCAGCAGGCCTACTTGTACGACCTCCAGCGGCAGTGCGAGGGCCA
GAAGCAGGACAAGGCTCGCAGGGTACAAGCGGCGAGGAGGGTTTTCAATG
CGGAGGATAGGGCAAGAAGGATGGCCGAGGCGGACGAGATGCCCCTGGAG
TCATGCCGGTTGTTCCAGGAGGCGACCCGGTTGCTGTGAATGGAGATGAA
CAAGGATGAAGCGGAGCGCTGCCTGGAGCTAGGGCGGAAGTTTATGCGGG
AGGGGTCCCATGCCAAGGCCGTCAAGTTCCTGGACAAGTCCCTCAAGCTG
TACCCTTTGCCAGGCGTCAAGGAGCTCAAAACACGGGCTGAAGCCGAGGG
CCAACGGGCGACAAGCAGCACCAATCAGAGCGGGAGTGGGAGCAGCAGTG
CAAATGCGGGCGGGGGTAGTGGGCAAGTGCCTCGGCGACGACCCTCTGCT
GACGGAAAGAGCACAAGCTATAGTAGAAGTAGTGGCGGGGGGGATGCCAG
TGTGGGCCAGAACGGACGGCCGTACACGGAGGAGGAGGTGGTGGCCTGCC
GTGCCATCATCCATTCGAAGAAGAAAGGCCACTATGAGGTCCTGAGTATC
TCTCGCACTGCCACTGACGACGAGATCAAGAAGTCTTACAGGAAGTTGGC
CTTGAGATTCCATCCCGACAAGAATGCAGCCCCGCAGGCAGACGAGGCGT
TCAAGGCTATCAGCACCGCCTTTCAAGTGCTGAGTGACCCTGACAAGCGG
CGATCATACGATCAGTTCGGGGATGACGAAGGGCCAGGGGCCGGAGGAGG
GCAAGCACACCCCTTCCGACACGCGGACGTGTCGCCCGAGGAGATATTTA
ACATGTTCTTCGGCATGAACGGCGGAGGGATGGGTGGAGGGCGTCCGGGC
AATTTCCGCGTCTATCGTTCCCAACAAGAAGGCAACCCTTTTTCCCGTTA
CCAGCAGCAGCAGCAGCAGCAGCATCAGCGACAAGGTCAACAGCAAAATC
CGCTTGGCGCCATGGCCCAATTCCTGCAAATGCTTCCCGTCCTCCTTCTC
CTTTTTCTCTCGCTCTTCTCATTCCCCCAAGAGAGCGAGCGGGCTTTCTC
ATTGAGCCGTACAGATCGGCACCCCATGCAGCGCGCCACATCAATGGATC
ACATCCTGCCCAATATTCCCTACTTCGTGGGCAACACCTTTTCCCGAGAC
CATGCACGGGACCGGCGGCGCCTCTTCCAGGTGGAGCGGGAAGTGCAGCA
GGCCTACTTGTACGACCTCCAGCGGCAGTGCGAGGGCCAGAAGCAGGACA
AGGCTCGCAGGGTACAAGCGGCGAGGAGGGTTTTCAATGCGGAGGATAGG
GCAAGAAGGATGGCCGAGGCGGACGAGATGCCCCTGGAGTCATGCCGGTT
GTTCCAGGAGGCGACCCGGTTGCTGTGAATGGAGATGAACAAGGATGAAG
CGGAGCGCTGCCTGGAGCTAGGGCGGAAGTTTATGCGGGAGGGGTCCCAT
GCCAAGGCCGTCAAGTTCCTGGACAAGTCCCTCAAGCTGTACCCTTTGCC
AGGCGTCAAGGAGCTCAAAACACGGGCTGAAGCCGAGGGCCAACGGGCGA
CAAGCAGCACCAATCAGAGCGGGAGTGGGAGCAGCAGTGCAAATGCGGGC
GGGGGTAGTGGGCAAGTGCCTCGGCGACGACCCTCTGCTGACGGAAAGAG
CACAAGCTATAGTAGAAGTAGTGGCGGGGGGGATGCCAGTGTGGGCCAGA
ACGGACGGCCGTACACGGAGGAGGAGGTGGTGGCCTGCCGTGCCATCATC
CATTCGAAGAAGAAAGGCCACTATGAGGTCCTGAGTATCTCTCGCACTGC
CACTGACGACGAGATCAAGAAGTCTTACAGGAAGTTGGCCTTGAGATTCC
ATCCCGACAAGAATGCAGCCCCGCAGGCAGACGAGGCGTTCAAGGCTATC
AGCACCGCCTTTCAAGTGCTGAGTGACCCTGACAAGCGGCGATCATACGA
TCAGTTCGGGGATGACGAAGGGCCAGGGGCCGGAGGAGGGCAAGCACACC
CCTTCCGACACGCGGACGTGTCGCCCGAGGAGATATTTAACATGTTCTTC
GGCATGAACGGCGGAGGGATGGGTGGAGGGCGTCCGGGCAATTTCCGCGT
CTATCGTTCCCAACAAGAAGGCAACCCTTTTTCCCGTTACCAGCAGCAGC
AGCAGCAGCAGCATCAGCGACAAGGTCAACAGCAAAATCCGCTTGGCGCC
ATGGCCCAATTCCTGCAAATGCTTCCCGTCCTCCTTCTCCTTTTTCTCTC
GCTCTTCTCATTCCCCCAAGAGAGCGAGCGGGCTTTCTCATTGAGCCGTA
CAGATCGGCACCCCATGCAGCGCGCCACATCAATGGATCACATCCTGCCC
AATATTCCCTACTTCGTGGGCAACACCTTTTCCCGAGACCATGCACGGGA
CCGGCGGCGCCTCTTCCAGGTGGAGCGGGAAGTGCAGCAGGCCTACTTGT
ACGACCTCCAGCGGCAGTGCGAGGGCCAGAAGCAGGACAAGGCTCGCAGG
GTACAAGCGGCGAGGAGGGTTTTCAATGCGGAGGATAGGGCAAGAAGGAT
GGCCGAGGCGGACGAGATGCCCCTGGAGTCATGCCGGTTGTTCCAGGAGG
CGACCCGGTTGCTGTGA

Synonyms

Publications