jgi.p|Nanoce1779_2|242751, mRNA_446 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|242751
Unique NamemRNA_446
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length877
Alignment locationscaffold_3:1100690..1101691 +

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Properties
Property NameValue
TranscriptId242837
TrackFilteredModels2
ProteinId242751
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1100690..1101691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|242751gene_446Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|242751mRNA_446-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_446CDS_446Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_446 ID=mRNA_446|Name=jgi.p|Nanoce1779_2|242751|organism=Nannochloropsis oceanica|type=mRNA|length=877bp
CACACAGGCAGTAGCAGGCCAGATCAAAGGTAGCCCATACGCAGAAGCAG
CCTTCAGCCGGAAGACTCTCAACCATGGCGGACGGCGGCCTGAGCAAGAT
GTACCAGCTGGTGCAGTGGTTGTCAAACCAAAAGGACGTTGACGCTTTCT
TGGATCCGGTGGACTGGAAGACGCTGGGGCTGACTGATTACCCTCTCGTG
ATTGCCCATCCCATGGACCTCGGCACCATCAAAGGGCGGCTGGAGAGCGG
GCATTATAGCAAGCATGCCCAGGTAGCGGAGGATGTGCGGCTGGTCTGGA
ATAATTGCAAGGCGTACAACCAAGAAGGGTCTTACCTCTACAAAATCGCG
GAAAAGCTCGCGGGGAAGTTTGAGGAGAAGTATGTCAAGATTAAGACGGA
AGAACCCGAAGGCCCGGAGGACGAGAACCAGCCACCGTCCTTGGAGGATA
AGAGGCAGTTTCGCGCAAATATGTACAAGATTACTTCGGACCAGCTGGGG
GAGATCGTGCAGACTTTGGAGCAGCAGTGTCAAGAAGCTCTAGCCAAGGT
GGGGGGGAAGGACGAGATCGAGATAAATATTGATAAAATTGCACCACGGA
CGTTTCACTTCCTGGCGAACCTGGTGAAGAATTCTCTGCCAGAAAAGAAG
GTGAGGGAGTGAAAGGATCGAGGAGCGCTATTCAGGGGATGATGGACGCT
CCTTCTCTGGGCAAGCCTACTTCCTCGTAGACAGATCAGATTTCCTTGTT
CGCCCACAAATGACGTGCACTCTTTGTCCATCCCTTGATCATCCAATTAC
AGGCAGCAGGGGCCAAGAAGCAAAAAAAATCGGGATCGGGCGCAGGGGGC
GCAGCAGCAGCAGCAGCGGCATCAACT
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protein sequence of jgi.p|Nanoce1779_2|242751

>mRNA_446-protein ID=mRNA_446-protein|Name=jgi.p|Nanoce1779_2|242751|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MADGGLSKMYQLVQWLSNQKDVDAFLDPVDWKTLGLTDYPLVIAHPMDLG
TIKGRLESGHYSKHAQVAEDVRLVWNNCKAYNQEGSYLYKIAEKLAGKFE
EKYVKIKTEEPEGPEDENQPPSLEDKRQFRANMYKITSDQLGEIVQTLEQ
QCQEALAKVGGKDEIEINIDKIAPRTFHFLANLVKNSLPEKKVRE*
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mRNA from alignment at scaffold_3:1100690..1101691+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_446 ID=mRNA_446|Name=jgi.p|Nanoce1779_2|242751|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp|location=Sequence derived from alignment at scaffold_3:1100690..1101691+ (Nannochloropsis oceanica)
CACACAGGCAGTAGCAGGCCAGATCAAAGGTAGCCCATACGCAGAAGCAG
CCTTCAGCCGGAAGGTGAGTGTAGCGGCTCCGCTTTTTAGCCTCCTTCCT
CCTGCGCATGACAAGCGAAGACCGACGAACAAACATTCCTGCCTCCCTCC
CTACCCTCTTCTCCGATTCCCTTCCAATCCTCTCGCTAGACTCTCAACCA
TGGCGGACGGCGGCCTGAGCAAGATGTACCAGCTGGTGCAGTGGTTGTCA
AACCAAAAGGACGTTGACGCTTTCTTGGATCCGGTGGACTGGAAGACGCT
GGGGCTGACTGATTACCCTCTCGTGATTGCCCATCCCATGGACCTCGGCA
CCATCAAAGGGCGGCTGGAGAGCGGGCATTATAGCAAGCATGCCCAGGTA
GCGGAGGATGTGCGGCTGGTCTGGAATAATTGCAAGGCGTACAACCAAGA
AGGGTCTTACCTCTACAAAATCGCGGAAAAGCTCGCGGGGAAGTTTGAGG
AGAAGTATGTCAAGATTAAGACGGAAGAACCCGAAGGCCCGGAGGACGAG
AACCAGCCACCGTCCTTGGAGGATAAGAGGCAGTTTCGCGCAAATATGTA
CAAGATTACTTCGGACCAGCTGGGGGAGATCGTGCAGACTTTGGAGCAGC
AGTGTCAAGAAGCTCTAGCCAAGGTGGGGGGGAAGGACGAGATCGAGATA
AATATTGATAAAATTGCACCACGGACGTTTCACTTCCTGGCGAACCTGGT
GAAGAATTCTCTGCCAGAAAAGAAGGTGAGGGAGTGAAAGGATCGAGGAG
CGCTATTCAGGGGATGATGGACGCTCCTTCTCTGGGCAAGCCTACTTCCT
CGTAGACAGATCAGATTTCCTTGTTCGCCCACAAATGACGTGCACTCTTT
GTCCATCCCTTGATCATCCAATTACAGGCAGCAGGGGCCAAGAAGCAAAA
AAAATCGGGATCGGGCGCAGGGGGCGCAGCAGCAGCAGCAGCGGCATCAA
CT
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Coding sequence (CDS) from alignment at scaffold_3:1100690..1101691+

>mRNA_446 ID=mRNA_446|Name=jgi.p|Nanoce1779_2|242751|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_3:1100690..1101691+ (Nannochloropsis oceanica)
ATGGCGGACGGCGGCCTGAGCAAGATGTACCAGCTGGTGCAGTGGTTGTC
AAACCAAAAGGACGTTGACGCTTTCTTGGATCCGGTGGACTGGAAGACGC
TGGGGCTGACTGATTACCCTCTCGTGATTGCCCATCCCATGGACCTCGGC
ACCATCAAAGGGCGGCTGGAGAGCGGGCATTATAGCAAGCATGCCCAGGT
AGCGGAGGATGTGCGGCTGGTCTGGAATAATTGCAAGGCGTACAACCAAG
AAGGGTCTTACCTCTACAAAATCGCGGAAAAGCTCGCGGGGAAGTTTGAG
GAGAAGTATGTCAAGATTAAGACGGAAGAACCCGAAGGCCCGGAGGACGA
GAACCAGCCACCGTCCTTGGAGGATAAGAGGCAGTTTCGCGCAAATATGT
ACAAGATTACTTCGGACCAGCTGGGGGAGATCGTGCAGACTTTGGAGCAG
CAGTGTCAAGAAGCTCTAGCCAAGGTGGGGGGGAAGGACGAGATCGAGAT
AAATATTGATAAAATTGCACCACGGACGTTTCACTTCCTGGCGAACCTGG
TGAAGAATTCTCTGCCAGAAAAGAAGGTGAGGGAGTGA
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Synonyms
Publications