jgi.p|Nanoce1779_2|589186, mRNA_4455 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589186
Unique NamemRNA_4455
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3983
Alignment locationscaffold_10:642396..646378 +

Link to JBrowse

Properties
Property NameValue
TranscriptId589272
TrackFilteredModels2
ProteinId589186
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:642396..646378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589186gene_4455Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589186mRNA_4455-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4455CDS_4455Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4455 ID=mRNA_4455|Name=jgi.p|Nanoce1779_2|589186|organism=Nannochloropsis oceanica|type=mRNA|length=3983bp
CCGCTGGGCAGGTGGTCGAATGTCTTTGCGTCCTCGGTGAAATATATGGT
CTCTAGTGCCTGATATGTCCTCTCCCACGCCTGTCCCCATCACCGTCTGA
TTCGATAGTTCTTCCGGAGCACTGACACTCACTCAATCAGCTCCACTGCC
ACTATTCATACAGGCATTATAAGAAGCGCACTTATGCCAGGGCAAGGCCG
CAGGGCAGGATAAGGCGCCAGAGAAAGCAAAGAACAAAACCCTCGGGGCA
GCCGGGAACCAGCGGCAGCTATGATGAGGCTGGGGGGCCAAGGCACGAAG
ATCCTTTCAAGACGGCGGCCACCACCATCACCAAGCGCAGCAGAAGCAGT
ACATTCAAGACAAGGAGCAAAAGCAGTGCGGCAACATTTATCAGCATGCA
TGGCAACATTTTCCCCTTCACACCGCAGAGCCCATCGCCTCGCCCCAACC
TTTGCCCTGTCGTCGTACCGAGCATTTAGCGTCTCCTCCTCAGTACCCAC
CACCGATCTCTCAACTTCACCACTATCGCATTCGTCGTTGGAAGATTCTA
CCACCTGGCACGCCTGGATCTACGACTCCATCCCCGTGCAGGGCATGCAA
GGCCTCCTTGAGACAATACAGGACACCACGGGTTTTCCCTGGTGGGCGTC
CATCGTCGTCTCCACCTTGGCCTTCCGCATAACCTTGCTCCCTATTGTGA
GGTACCAAGCACATGCCCTCGCACGCTTGGCCAAGGCCGGGCCGTTGCTC
GTGGCGCTGAATCAAGCCCTTTCCAAGCGTCTCGACGGAATTCGCCCGGG
GGACGTTAAGGCGACGACTGCAACCTGCAAGACTTATGCTGCCGGGGTTA
ATGCCGCACTGAAGGTCCACCAGGTCGGACTGCTGGCTGCAGTCGCTTCG
CCGTTGATTCAACTACCCGTTTTTATAACTTTTGCGTTGGCGAATCGTCG
CATGATTGACACGCACGTCCCAGGGCTAGAAACCGGAGGCCTGGCGTGGT
TTGAAGACCTAACCGAGGCCGACTCCCTCCTTATCCTCCCTGCACTCTGC
CTGGGCTCCACCTACATGAATTTAGAGTTGGGGTTTGCCCGCTTGCATGA
ATCGCAAACGATTCTGCGTTTTCTGAAGGATAATTTACAGTTGTTGCTCA
TATTGGGAGCTCCGGTTTCGTCCACCCTCCCGGCGGGTGTCTTTGTGTAC
TGGTTCACTTCCAGCATGTATGGCCATGCCCAGCATTTTGCTCTGCGCAA
CGCAAGTGTCCGTGAGATGTTAGGTTTTCCTGTCATACCAGTACCAGGTG
CTAGTGCGGGGGCTCCACCTGTCGGTACAAAAGAGGAGAAGTCGTCCCTA
CCTCCTCCCTCGGAGTCGCCGTCATCATCAGGAAGAGGAGGCGGGGCGGC
CTTGGTCGATCCGCGGCTTTTGTCCCAAGCGCTGCAGGCTATCAAAAAGT
ACGAAATAAGAGTCGCCGCTCGTTTGAAGCAAAAGGGCAACAATCGCCAA
CAGGAAGGGAAGGAGGGCGACGGAAAGAAACAGAGCGGCGGTCCGGTGCT
CTCGACTACCCCGCCACCAAGAAGTAAAGGGGGAATGTGACACACAGCAG
CAGCGCTGCATATCGAAGAATCGCACACTTTGGAGACATCAATTTCTGTC
CAACTCTCCCCGGCTAGCTTCTCAGTTATCTTGACTTAATTTGACTTGAC
TTGATCGTTCTTTTTGAATACACCGAGAGGGATTTTCATGGCGCACGCCG
AAGCAGGCCAACACTGTACCGTGCAGAATATCACATCTCCATGGGCAGGG
CACTCAGATCTTACGCACTCGAACCATTTCGGGGCTTGGGCGGCCCTGAC
TCATGTACGCGTCTTCTCCCAGTCATTGACCACAACAACCCCTTCACCAT
GGGCCTTCATCATCATTGCCGCGATCCCCTACTTTTGTCGATCTCACCTC
AAACATTACATTCAACCTCCGCAAGCACCCAAAAGCTAGGAGACGACGAC
AGAAAAATGATCTCACAGGTCTCGTCTCCAGCCCTGGACGAGGAGCCCTT
GCTGCGGCAGCCGCAGCAGGACGAAGGCCCTCCTTCCGCTTCTGCCGAGG
TCATGCCCGCACGCGGCAGCAACAAGCCCGTACTGCGGCGGCCGAATCTA
TACACCCACTACAGCAGCTCCTCACGATCTGTCCTCATCCGTTTGCAGAG
CGATCGAGTAGTCGAAGTGAGAAGAGGAGACGGTGACGAGGAGGACAGCG
ACGACGACGATGCCGACGATGTAGGCAAAGGCAGGGAAAGTGGCCGGCTG
CAGACCAGTGTGCTCCAGTTTGGGGCCTGCGGGTTGCGCGTATGTGGGCA
CAATGCCTGGTGGAGCGGCCTGAGCACGTCCATGAAGTTAGTCTGGGCCT
ATTACTTCTTTAATTGGACCGTCATCTTCCTTGCGCTAGCTGTCTGTTCG
TTGATTACAATAGTGTACGAGGCATTGGAGACAGTGGATAGCTTGGGGCA
AGCCGCCATTGTTATTGGGCTCCTGCCAGTCATAACGCTGCTGTGGCTCT
TCTTTAGCTTCGTGTATATTGTTTTGTTTTGGGGCGTATGGGATGACTTT
TATGATCTGGATGCATCGCTCTTTTCCTTAAGACGGAAACTACGGAGCTC
TTTTGCTAGAAGGACACTGACAGTCCTCGTTACCTTTCTCATTAATGGAC
CCGTACTCTTCAGTCTGGCTGTATTTGCGGTGCAGCTGAAGAAAACAGCC
AGTGACTGGCTGTGGCGAACCCAGTTCGTTCTGAGTTTTGCATGCAATGT
TGCGCTGGTCTTCCTCTTTTTTGGTGGAGCTTTGCTTGGACAGGACCACT
CTGTCCTTAGACAGGTCAAAGACCGCGAGGCGTTAGACGTGGCAGAGGGT
CTTTCAACTAGCTCTTCTTCTACTGGAGCGCATCGGTGTCTTGCACGGTG
GCGGCACTCGCTGCATATTATCCTTCACTCACAAGCTAGTGAAGCGATCA
GAATATATATGAGAAGCACCATTCAAGGGGGCGGCGCTCTCAGCAGCAGT
GATTCGCCCTGGGGGAAATATGCTGCAAAGTCTTTTCTGCCTCAGCCTAT
GGATTTAGATGGGGCAATAAACTACCCGTATGAGGCGGACACGGGTAACG
ACAACGACGGCGGCAGCAGCGAGGCTAAGCTAGAGGAGGAACGCATGGAG
GAACGAGAGGCGTACCAACGAGGACGCCGCCAGCAGCTAGCTAGCCAAGG
CGTCAAACCATGGCCAACTGCATGGCACGCAGGATGGTATTGCCTACACT
GGTGGAGTTGGAAGAGCAATTGGCGATTGGACGAAAACCGCTCCGTTCAA
GTACTGGTGACCCTACCTTGGAACCTCCTCCTCACCACCTTTCTTGTCTT
ACTGGCGTACACCGCACTCTCCGTCCGTGCATACATCCTCTTTGGCTTCA
TCATTTCCTACTATATCGCCGTGCCTGTACTTCGAGCCATCTTCGCAAGA
TTCATCGTCGTCTACTTGAGCCCCGCCGGTCTCTTGGCTATGGACGTCGC
ACTTACGCTTCTCCTTATCGCGGGCTTCTTGCTCTGCCTCTCCCTAGCAT
CCTATTACCTGGGCATAACAGTAATTCTTGTGATTATCTTGTCCAACGCC
CTGGTCCTGCTCGCACACTTCCCCGCCATCCGCGACAAACGAGTGCCCCC
ACCCCATACCTACGAAGAATGCCTCGCCTTTCACACTAAGGCTCGCACGC
ATGCCATCATCACAACGGCGCGTAAATGGGGGTTCGCCTCCATCCTCTTT
CTCGTCGTTTTAGTCCTTTGCCTACGGACAGTTCCTGAAAACTACCAACA
AGCCCACAATGCATACAAAGCTGCGAGAGGTGCTTCTCGAAACCCACTGC
TGATACAGCCACCACATCTCGCTTCGTCCCCTTCTGGCGCCGCCGCCGTC
GCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCA
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protein sequence of jgi.p|Nanoce1779_2|589186

>mRNA_4455-protein ID=mRNA_4455-protein|Name=jgi.p|Nanoce1779_2|589186|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MMRLGGQGTKILSRRRPPPSPSAAEAVHSRQGAKAVRQHLSACMATFSPS
HRRAHRLAPTFALSSYRAFSVSSSVPTTDLSTSPLSHSSLEDSTTWHAWI
YDSIPVQGMQGLLETIQDTTGFPWWASIVVSTLAFRITLLPIVRYQAHAL
ARLAKAGPLLVALNQALSKRLDGIRPGDVKATTATCKTYAAGVNAALKVH
QVGLLAAVASPLIQLPVFITFALANRRMIDTHVPGLETGGLAWFEDLTEA
DSLLILPALCLGSTYMNLELGFARLHESQTILRFLKDNLQLLLILGAPVS
STLPAGVFVYWFTSSMYGHAQHFALRNASVREMLGFPVIPVPGASAGAPP
VGTKEEKSSLPPPSESPSSSGRGGGAALVDPRLLSQALQAIKKYEIRVAA
RLKQKGNNRQQEGKEGDGKKQSGGPVLSTTPPPRSKGGM*
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mRNA from alignment at scaffold_10:642396..646378+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4455 ID=mRNA_4455|Name=jgi.p|Nanoce1779_2|589186|organism=Nannochloropsis oceanica|type=mRNA|length=3983bp|location=Sequence derived from alignment at scaffold_10:642396..646378+ (Nannochloropsis oceanica)
CCGCTGGGCAGGTGGTCGAATGTCTTTGCGTCCTCGGTGAAATATATGGT CTCTAGTGCCTGATATGTCCTCTCCCACGCCTGTCCCCATCACCGTCTGA TTCGATAGTTCTTCCGGAGCACTGACACTCACTCAATCAGCTCCACTGCC ACTATTCATACAGGCATTATAAGAAGCGCACTTATGCCAGGGCAAGGCCG CAGGGCAGGATAAGGCGCCAGAGAAAGCAAAGAACAAAACCCTCGGGGCA GCCGGGAACCAGCGGCAGCTATGATGAGGCTGGGGGGCCAAGGCACGAAG ATCCTTTCAAGACGGCGGCCACCACCATCACCAAGCGCAGCAGAAGCAGT ACATTCAAGACAAGGAGCAAAAGCAGTGCGGCAACATTTATCAGCATGCA TGGCAACATTTTCCCCTTCACACCGCAGAGCCCATCGCCTCGCCCCAACC TTTGCCCTGTCGTCGTACCGAGCATTTAGCGTCTCCTCCTCAGTACCCAC CACCGATCTCTCAACTTCACCACTATCGCATTCGTCGTTGGAAGATTCTA CCACCTGGCACGCCTGGATCTACGACTCCATCCCCGTGCAGGGCATGCAA GGCCTCCTTGAGACAATACAGGACACCACGGGTTTTCCCTGGTGGGCGTC CATCGTCGTCTCCACCTTGGCCTTCCGCATAACCTTGCTCCCTATTGTGA GGTACCAAGCACATGCCCTCGCACGCTTGGCCAAGGCCGGGCCGTTGCTC GTGGCGCTGAATCAAGCCCTTTCCAAGCGTCTCGACGGAATTCGCCCGGG GGACGTTAAGGCGACGACTGCAACCTGCAAGACTTATGCTGCCGGGGTTA ATGCCGCACTGAAGGTCCACCAGGTCGGACTGCTGGCTGCAGTCGCTTCG CCGTTGATTCAACTACCCGTTTTTATAACTTTTGCGTTGGCGAATCGTCG CATGATTGACACGCACGTCCCAGGGCTAGAAACCGGAGGCCTGGCGTGGT TTGAAGACCTAACCGAGGCCGACTCCCTCCTTATCCTCCCTGCACTCTGC CTGGGCTCCACCTACATGAATTTAGAGTTGGGGTTTGCCCGCTTGCATGA ATCGCAAACGATTCTGCGTTTTCTGAAGGATAATTTACAGTTGTTGCTCA TATTGGGAGCTCCGGTTTCGTCCACCCTCCCGGCGGGTGTCTTTGTGTAC TGGTTCACTTCCAGCATGTATGGCCATGCCCAGCATTTTGCTCTGCGCAA CGCAAGTGTCCGTGAGATGTTAGGTTTTCCTGTCATACCAGTACCAGGTG CTAGTGCGGGGGCTCCACCTGTCGGTACAAAAGAGGAGAAGTCGTCCCTA CCTCCTCCCTCGGAGTCGCCGTCATCATCAGGAAGAGGAGGCGGGGCGGC CTTGGTCGATCCGCGGCTTTTGTCCCAAGCGCTGCAGGCTATCAAAAAGT ACGAAATAAGAGTCGCCGCTCGTTTGAAGCAAAAGGGCAACAATCGCCAA CAGGAAGGGAAGGAGGGCGACGGAAAGAAACAGAGCGGCGGTCCGGTGCT CTCGACTACCCCGCCACCAAGAAGTAAAGGGGGAATGTGACACACAGCAG CAGCGCTGCATATCGAAGAATCGCACACTTTGGAGACATCAATTTCTGTC CAACTCTCCCCGGCTAGCTTCTCAGTTATCTTGACTTAATTTGACTTGAC TTGATCGTTCTTTTTGAATACACCGAGAGGGATTTTCATGGCGCACGCCG AAGCAGGCCAACACTGTACCGTGCAGAATATCACATCTCCATGGGCAGGG CACTCAGATCTTACGCACTCGAACCATTTCGGGGCTTGGGCGGCCCTGAC TCATGTACGCGTCTTCTCCCAGTCATTGACCACAACAACCCCTTCACCAT GGGCCTTCATCATCATTGCCGCGATCCCCTACTTTTGTCGATCTCACCTC AAACATTACATTCAACCTCCGCAAGCACCCAAAAGCTAGGAGACGACGAC AGAAAAATGATCTCACAGGTCTCGTCTCCAGCCCTGGACGAGGAGCCCTT GCTGCGGCAGCCGCAGCAGGACGAAGGCCCTCCTTCCGCTTCTGCCGAGG TCATGCCCGCACGCGGCAGCAACAAGCCCGTACTGCGGCGGCCGAATCTA TACACCCACTACAGCAGCTCCTCACGATCTGTCCTCATCCGTTTGCAGAG CGATCGAGTAGTCGAAGTGAGAAGAGGAGACGGTGACGAGGAGGACAGCG ACGACGACGATGCCGACGATGTAGGCAAAGGCAGGGAAAGTGGCCGGCTG CAGACCAGTGTGCTCCAGTTTGGGGCCTGCGGGTTGCGCGTATGTGGGCA CAATGCCTGGTGGAGCGGCCTGAGCACGTCCATGAAGTTAGTCTGGGCCT ATTACTTCTTTAATTGGACCGTCATCTTCCTTGCGCTAGCTGTCTGTTCG TTGATTACAATAGTGTACGAGGCATTGGAGACAGTGGATAGCTTGGGGCA AGCCGCCATTGTTATTGGGCTCCTGCCAGTCATAACGCTGCTGTGGCTCT TCTTTAGCTTCGTGTATATTGTTTTGTTTTGGGGCGTATGGGATGACTTT TATGATCTGGATGCATCGCTCTTTTCCTTAAGACGGAAACTACGGAGCTC TTTTGCTAGAAGGACACTGACAGTCCTCGTTACCTTTCTCATTAATGGAC CCGTACTCTTCAGTCTGGCTGTATTTGCGGTGCAGCTGAAGAAAACAGCC AGTGACTGGCTGTGGCGAACCCAGTTCGTTCTGAGTTTTGCATGCAATGT TGCGCTGGTCTTCCTCTTTTTTGGTGGAGCTTTGCTTGGACAGGACCACT CTGTCCTTAGACAGGTCAAAGACCGCGAGGCGTTAGACGTGGCAGAGGGT CTTTCAACTAGCTCTTCTTCTACTGGAGCGCATCGGTGTCTTGCACGGTG GCGGCACTCGCTGCATATTATCCTTCACTCACAAGCTAGTGAAGCGATCA GAATATATATGAGAAGCACCATTCAAGGGGGCGGCGCTCTCAGCAGCAGT GATTCGCCCTGGGGGAAATATGCTGCAAAGTCTTTTCTGCCTCAGCCTAT GGATTTAGATGGGGCAATAAACTACCCGTATGAGGCGGACACGGGTAACG ACAACGACGGCGGCAGCAGCGAGGCTAAGCTAGAGGAGGAACGCATGGAG GAACGAGAGGCGTACCAACGAGGACGCCGCCAGCAGCTAGCTAGCCAAGG CGTCAAACCATGGCCAACTGCATGGCACGCAGGATGGTATTGCCTACACT GGTGGAGTTGGAAGAGCAATTGGCGATTGGACGAAAACCGCTCCGTTCAA GTACTGGTGACCCTACCTTGGAACCTCCTCCTCACCACCTTTCTTGTCTT ACTGGCGTACACCGCACTCTCCGTCCGTGCATACATCCTCTTTGGCTTCA TCATTTCCTACTATATCGCCGTGCCTGTACTTCGAGCCATCTTCGCAAGA TTCATCGTCGTCTACTTGAGCCCCGCCGGTCTCTTGGCTATGGACGTCGC ACTTACGCTTCTCCTTATCGCGGGCTTCTTGCTCTGCCTCTCCCTAGCAT CCTATTACCTGGGCATAACAGTAATTCTTGTGATTATCTTGTCCAACGCC CTGGTCCTGCTCGCACACTTCCCCGCCATCCGCGACAAACGAGTGCCCCC ACCCCATACCTACGAAGAATGCCTCGCCTTTCACACTAAGGCTCGCACGC ATGCCATCATCACAACGGCGCGTAAATGGGGGTTCGCCTCCATCCTCTTT CTCGTCGTTTTAGTCCTTTGCCTACGGACAGTTCCTGAAAACTACCAACA AGCCCACAATGCATACAAAGCTGCGAGAGGTGCTTCTCGAAACCCACTGC TGATACAGCCACCACATCTCGCTTCGTCCCCTTCTGGCGCCGCCGCCGTC GCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCA
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Coding sequence (CDS) from alignment at scaffold_10:642396..646378+

>mRNA_4455 ID=mRNA_4455|Name=jgi.p|Nanoce1779_2|589186|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_10:642396..646378+ (Nannochloropsis oceanica)
ATGATGAGGCTGGGGGGCCAAGGCACGAAGATCCTTTCAAGACGGCGGCC
ACCACCATCACCAAGCGCAGCAGAAGCAGTACATTCAAGACAAGGAGCAA
AAGCAGTGCGGCAACATTTATCAGCATGCATGGCAACATTTTCCCCTTCA
CACCGCAGAGCCCATCGCCTCGCCCCAACCTTTGCCCTGTCGTCGTACCG
AGCATTTAGCGTCTCCTCCTCAGTACCCACCACCGATCTCTCAACTTCAC
CACTATCGCATTCGTCGTTGGAAGATTCTACCACCTGGCACGCCTGGATC
TACGACTCCATCCCCGTGCAGGGCATGCAAGGCCTCCTTGAGACAATACA
GGACACCACGGGTTTTCCCTGGTGGGCGTCCATCGTCGTCTCCACCTTGG
CCTTCCGCATAACCTTGCTCCCTATTGTGAGGTACCAAGCACATGCCCTC
GCACGCTTGGCCAAGGCCGGGCCGTTGCTCGTGGCGCTGAATCAAGCCCT
TTCCAAGCGTCTCGACGGAATTCGCCCGGGGGACGTTAAGGCGACGACTG
CAACCTGCAAGACTTATGCTGCCGGGGTTAATGCCGCACTGAAGGTCCAC
CAGGTCGGACTGCTGGCTGCAGTCGCTTCGCCGTTGATTCAACTACCCGT
TTTTATAACTTTTGCGTTGGCGAATCGTCGCATGATTGACACGCACGTCC
CAGGGCTAGAAACCGGAGGCCTGGCGTGGTTTGAAGACCTAACCGAGGCC
GACTCCCTCCTTATCCTCCCTGCACTCTGCCTGGGCTCCACCTACATGAA
TTTAGAGTTGGGGTTTGCCCGCTTGCATGAATCGCAAACGATTCTGCGTT
TTCTGAAGGATAATTTACAGTTGTTGCTCATATTGGGAGCTCCGGTTTCG
TCCACCCTCCCGGCGGGTGTCTTTGTGTACTGGTTCACTTCCAGCATGTA
TGGCCATGCCCAGCATTTTGCTCTGCGCAACGCAAGTGTCCGTGAGATGT
TAGGTTTTCCTGTCATACCAGTACCAGGTGCTAGTGCGGGGGCTCCACCT
GTCGGTACAAAAGAGGAGAAGTCGTCCCTACCTCCTCCCTCGGAGTCGCC
GTCATCATCAGGAAGAGGAGGCGGGGCGGCCTTGGTCGATCCGCGGCTTT
TGTCCCAAGCGCTGCAGGCTATCAAAAAGTACGAAATAAGAGTCGCCGCT
CGTTTGAAGCAAAAGGGCAACAATCGCCAACAGGAAGGGAAGGAGGGCGA
CGGAAAGAAACAGAGCGGCGGTCCGGTGCTCTCGACTACCCCGCCACCAA
GAAGTAAAGGGGGAATGTGA
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Synonyms
Publications