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Properties
| Property Name | Value |
| TranscriptId | 589272 |
| Track | FilteredModels2 |
| ProteinId | 589186 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| scaffold_10 | supercontig | scaffold_10:642396..646378 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4455 ID=mRNA_4455|Name=jgi.p|Nanoce1779_2|589186|organism=Nannochloropsis oceanica|type=mRNA|length=3983bp CCGCTGGGCAGGTGGTCGAATGTCTTTGCGTCCTCGGTGAAATATATGGT CTCTAGTGCCTGATATGTCCTCTCCCACGCCTGTCCCCATCACCGTCTGA TTCGATAGTTCTTCCGGAGCACTGACACTCACTCAATCAGCTCCACTGCC ACTATTCATACAGGCATTATAAGAAGCGCACTTATGCCAGGGCAAGGCCG CAGGGCAGGATAAGGCGCCAGAGAAAGCAAAGAACAAAACCCTCGGGGCA GCCGGGAACCAGCGGCAGCTATGATGAGGCTGGGGGGCCAAGGCACGAAG ATCCTTTCAAGACGGCGGCCACCACCATCACCAAGCGCAGCAGAAGCAGT ACATTCAAGACAAGGAGCAAAAGCAGTGCGGCAACATTTATCAGCATGCA TGGCAACATTTTCCCCTTCACACCGCAGAGCCCATCGCCTCGCCCCAACC TTTGCCCTGTCGTCGTACCGAGCATTTAGCGTCTCCTCCTCAGTACCCAC CACCGATCTCTCAACTTCACCACTATCGCATTCGTCGTTGGAAGATTCTA CCACCTGGCACGCCTGGATCTACGACTCCATCCCCGTGCAGGGCATGCAA GGCCTCCTTGAGACAATACAGGACACCACGGGTTTTCCCTGGTGGGCGTC CATCGTCGTCTCCACCTTGGCCTTCCGCATAACCTTGCTCCCTATTGTGA GGTACCAAGCACATGCCCTCGCACGCTTGGCCAAGGCCGGGCCGTTGCTC GTGGCGCTGAATCAAGCCCTTTCCAAGCGTCTCGACGGAATTCGCCCGGG GGACGTTAAGGCGACGACTGCAACCTGCAAGACTTATGCTGCCGGGGTTA ATGCCGCACTGAAGGTCCACCAGGTCGGACTGCTGGCTGCAGTCGCTTCG CCGTTGATTCAACTACCCGTTTTTATAACTTTTGCGTTGGCGAATCGTCG CATGATTGACACGCACGTCCCAGGGCTAGAAACCGGAGGCCTGGCGTGGT TTGAAGACCTAACCGAGGCCGACTCCCTCCTTATCCTCCCTGCACTCTGC CTGGGCTCCACCTACATGAATTTAGAGTTGGGGTTTGCCCGCTTGCATGA ATCGCAAACGATTCTGCGTTTTCTGAAGGATAATTTACAGTTGTTGCTCA TATTGGGAGCTCCGGTTTCGTCCACCCTCCCGGCGGGTGTCTTTGTGTAC TGGTTCACTTCCAGCATGTATGGCCATGCCCAGCATTTTGCTCTGCGCAA CGCAAGTGTCCGTGAGATGTTAGGTTTTCCTGTCATACCAGTACCAGGTG CTAGTGCGGGGGCTCCACCTGTCGGTACAAAAGAGGAGAAGTCGTCCCTA CCTCCTCCCTCGGAGTCGCCGTCATCATCAGGAAGAGGAGGCGGGGCGGC CTTGGTCGATCCGCGGCTTTTGTCCCAAGCGCTGCAGGCTATCAAAAAGT ACGAAATAAGAGTCGCCGCTCGTTTGAAGCAAAAGGGCAACAATCGCCAA CAGGAAGGGAAGGAGGGCGACGGAAAGAAACAGAGCGGCGGTCCGGTGCT CTCGACTACCCCGCCACCAAGAAGTAAAGGGGGAATGTGACACACAGCAG CAGCGCTGCATATCGAAGAATCGCACACTTTGGAGACATCAATTTCTGTC CAACTCTCCCCGGCTAGCTTCTCAGTTATCTTGACTTAATTTGACTTGAC TTGATCGTTCTTTTTGAATACACCGAGAGGGATTTTCATGGCGCACGCCG AAGCAGGCCAACACTGTACCGTGCAGAATATCACATCTCCATGGGCAGGG CACTCAGATCTTACGCACTCGAACCATTTCGGGGCTTGGGCGGCCCTGAC TCATGTACGCGTCTTCTCCCAGTCATTGACCACAACAACCCCTTCACCAT GGGCCTTCATCATCATTGCCGCGATCCCCTACTTTTGTCGATCTCACCTC AAACATTACATTCAACCTCCGCAAGCACCCAAAAGCTAGGAGACGACGAC AGAAAAATGATCTCACAGGTCTCGTCTCCAGCCCTGGACGAGGAGCCCTT GCTGCGGCAGCCGCAGCAGGACGAAGGCCCTCCTTCCGCTTCTGCCGAGG TCATGCCCGCACGCGGCAGCAACAAGCCCGTACTGCGGCGGCCGAATCTA TACACCCACTACAGCAGCTCCTCACGATCTGTCCTCATCCGTTTGCAGAG CGATCGAGTAGTCGAAGTGAGAAGAGGAGACGGTGACGAGGAGGACAGCG ACGACGACGATGCCGACGATGTAGGCAAAGGCAGGGAAAGTGGCCGGCTG CAGACCAGTGTGCTCCAGTTTGGGGCCTGCGGGTTGCGCGTATGTGGGCA CAATGCCTGGTGGAGCGGCCTGAGCACGTCCATGAAGTTAGTCTGGGCCT ATTACTTCTTTAATTGGACCGTCATCTTCCTTGCGCTAGCTGTCTGTTCG TTGATTACAATAGTGTACGAGGCATTGGAGACAGTGGATAGCTTGGGGCA AGCCGCCATTGTTATTGGGCTCCTGCCAGTCATAACGCTGCTGTGGCTCT TCTTTAGCTTCGTGTATATTGTTTTGTTTTGGGGCGTATGGGATGACTTT TATGATCTGGATGCATCGCTCTTTTCCTTAAGACGGAAACTACGGAGCTC TTTTGCTAGAAGGACACTGACAGTCCTCGTTACCTTTCTCATTAATGGAC CCGTACTCTTCAGTCTGGCTGTATTTGCGGTGCAGCTGAAGAAAACAGCC AGTGACTGGCTGTGGCGAACCCAGTTCGTTCTGAGTTTTGCATGCAATGT TGCGCTGGTCTTCCTCTTTTTTGGTGGAGCTTTGCTTGGACAGGACCACT CTGTCCTTAGACAGGTCAAAGACCGCGAGGCGTTAGACGTGGCAGAGGGT CTTTCAACTAGCTCTTCTTCTACTGGAGCGCATCGGTGTCTTGCACGGTG GCGGCACTCGCTGCATATTATCCTTCACTCACAAGCTAGTGAAGCGATCA GAATATATATGAGAAGCACCATTCAAGGGGGCGGCGCTCTCAGCAGCAGT GATTCGCCCTGGGGGAAATATGCTGCAAAGTCTTTTCTGCCTCAGCCTAT GGATTTAGATGGGGCAATAAACTACCCGTATGAGGCGGACACGGGTAACG ACAACGACGGCGGCAGCAGCGAGGCTAAGCTAGAGGAGGAACGCATGGAG GAACGAGAGGCGTACCAACGAGGACGCCGCCAGCAGCTAGCTAGCCAAGG CGTCAAACCATGGCCAACTGCATGGCACGCAGGATGGTATTGCCTACACT GGTGGAGTTGGAAGAGCAATTGGCGATTGGACGAAAACCGCTCCGTTCAA GTACTGGTGACCCTACCTTGGAACCTCCTCCTCACCACCTTTCTTGTCTT ACTGGCGTACACCGCACTCTCCGTCCGTGCATACATCCTCTTTGGCTTCA TCATTTCCTACTATATCGCCGTGCCTGTACTTCGAGCCATCTTCGCAAGA TTCATCGTCGTCTACTTGAGCCCCGCCGGTCTCTTGGCTATGGACGTCGC ACTTACGCTTCTCCTTATCGCGGGCTTCTTGCTCTGCCTCTCCCTAGCAT CCTATTACCTGGGCATAACAGTAATTCTTGTGATTATCTTGTCCAACGCC CTGGTCCTGCTCGCACACTTCCCCGCCATCCGCGACAAACGAGTGCCCCC ACCCCATACCTACGAAGAATGCCTCGCCTTTCACACTAAGGCTCGCACGC ATGCCATCATCACAACGGCGCGTAAATGGGGGTTCGCCTCCATCCTCTTT CTCGTCGTTTTAGTCCTTTGCCTACGGACAGTTCCTGAAAACTACCAACA AGCCCACAATGCATACAAAGCTGCGAGAGGTGCTTCTCGAAACCCACTGC TGATACAGCCACCACATCTCGCTTCGTCCCCTTCTGGCGCCGCCGCCGTC GCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCA back to topprotein sequence of jgi.p|Nanoce1779_2|589186 >mRNA_4455-protein ID=mRNA_4455-protein|Name=jgi.p|Nanoce1779_2|589186|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp MMRLGGQGTKILSRRRPPPSPSAAEAVHSRQGAKAVRQHLSACMATFSPS HRRAHRLAPTFALSSYRAFSVSSSVPTTDLSTSPLSHSSLEDSTTWHAWI YDSIPVQGMQGLLETIQDTTGFPWWASIVVSTLAFRITLLPIVRYQAHAL ARLAKAGPLLVALNQALSKRLDGIRPGDVKATTATCKTYAAGVNAALKVH QVGLLAAVASPLIQLPVFITFALANRRMIDTHVPGLETGGLAWFEDLTEA DSLLILPALCLGSTYMNLELGFARLHESQTILRFLKDNLQLLLILGAPVS STLPAGVFVYWFTSSMYGHAQHFALRNASVREMLGFPVIPVPGASAGAPP VGTKEEKSSLPPPSESPSSSGRGGGAALVDPRLLSQALQAIKKYEIRVAA RLKQKGNNRQQEGKEGDGKKQSGGPVLSTTPPPRSKGGM* back to topmRNA from alignment at scaffold_10:642396..646378+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4455 ID=mRNA_4455|Name=jgi.p|Nanoce1779_2|589186|organism=Nannochloropsis oceanica|type=mRNA|length=3983bp|location=Sequence derived from alignment at scaffold_10:642396..646378+ (Nannochloropsis oceanica) CCGCTGGGCAGGTGGTCGAATGTCTTTGCGTCCTCGGTGAAATATATGGT
CTCTAGTGCCTGATATGTCCTCTCCCACGCCTGTCCCCATCACCGTCTGA
TTCGATAGTTCTTCCGGAGCACTGACACTCACTCAATCAGCTCCACTGCC
ACTATTCATACAGGCATTATAAGAAGCGCACTTATGCCAGGGCAAGGCCG
CAGGGCAGGATAAGGCGCCAGAGAAAGCAAAGAACAAAACCCTCGGGGCA
GCCGGGAACCAGCGGCAGCTATGATGAGGCTGGGGGGCCAAGGCACGAAG
ATCCTTTCAAGACGGCGGCCACCACCATCACCAAGCGCAGCAGAAGCAGT
ACATTCAAGACAAGGAGCAAAAGCAGTGCGGCAACATTTATCAGCATGCA
TGGCAACATTTTCCCCTTCACACCGCAGAGCCCATCGCCTCGCCCCAACC
TTTGCCCTGTCGTCGTACCGAGCATTTAGCGTCTCCTCCTCAGTACCCAC
CACCGATCTCTCAACTTCACCACTATCGCATTCGTCGTTGGAAGATTCTA
CCACCTGGCACGCCTGGATCTACGACTCCATCCCCGTGCAGGGCATGCAA
GGCCTCCTTGAGACAATACAGGACACCACGGGTTTTCCCTGGTGGGCGTC
CATCGTCGTCTCCACCTTGGCCTTCCGCATAACCTTGCTCCCTATTGTGA
GGTACCAAGCACATGCCCTCGCACGCTTGGCCAAGGCCGGGCCGTTGCTC
GTGGCGCTGAATCAAGCCCTTTCCAAGCGTCTCGACGGAATTCGCCCGGG
GGACGTTAAGGCGACGACTGCAACCTGCAAGACTTATGCTGCCGGGGTTA
ATGCCGCACTGAAGGTCCACCAGGTCGGACTGCTGGCTGCAGTCGCTTCG
CCGTTGATTCAACTACCCGTTTTTATAACTTTTGCGTTGGCGAATCGTCG
CATGATTGACACGCACGTCCCAGGGCTAGAAACCGGAGGCCTGGCGTGGT
TTGAAGACCTAACCGAGGCCGACTCCCTCCTTATCCTCCCTGCACTCTGC
CTGGGCTCCACCTACATGAATTTAGAGTTGGGGTTTGCCCGCTTGCATGA
ATCGCAAACGATTCTGCGTTTTCTGAAGGATAATTTACAGTTGTTGCTCA
TATTGGGAGCTCCGGTTTCGTCCACCCTCCCGGCGGGTGTCTTTGTGTAC
TGGTTCACTTCCAGCATGTATGGCCATGCCCAGCATTTTGCTCTGCGCAA
CGCAAGTGTCCGTGAGATGTTAGGTTTTCCTGTCATACCAGTACCAGGTG
CTAGTGCGGGGGCTCCACCTGTCGGTACAAAAGAGGAGAAGTCGTCCCTA
CCTCCTCCCTCGGAGTCGCCGTCATCATCAGGAAGAGGAGGCGGGGCGGC
CTTGGTCGATCCGCGGCTTTTGTCCCAAGCGCTGCAGGCTATCAAAAAGT
ACGAAATAAGAGTCGCCGCTCGTTTGAAGCAAAAGGGCAACAATCGCCAA
CAGGAAGGGAAGGAGGGCGACGGAAAGAAACAGAGCGGCGGTCCGGTGCT
CTCGACTACCCCGCCACCAAGAAGTAAAGGGGGAATGTGACACACAGCAG
CAGCGCTGCATATCGAAGAATCGCACACTTTGGAGACATCAATTTCTGTC
CAACTCTCCCCGGCTAGCTTCTCAGTTATCTTGACTTAATTTGACTTGAC
TTGATCGTTCTTTTTGAATACACCGAGAGGGATTTTCATGGCGCACGCCG
AAGCAGGCCAACACTGTACCGTGCAGAATATCACATCTCCATGGGCAGGG
CACTCAGATCTTACGCACTCGAACCATTTCGGGGCTTGGGCGGCCCTGAC
TCATGTACGCGTCTTCTCCCAGTCATTGACCACAACAACCCCTTCACCAT
GGGCCTTCATCATCATTGCCGCGATCCCCTACTTTTGTCGATCTCACCTC
AAACATTACATTCAACCTCCGCAAGCACCCAAAAGCTAGGAGACGACGAC
AGAAAAATGATCTCACAGGTCTCGTCTCCAGCCCTGGACGAGGAGCCCTT
GCTGCGGCAGCCGCAGCAGGACGAAGGCCCTCCTTCCGCTTCTGCCGAGG
TCATGCCCGCACGCGGCAGCAACAAGCCCGTACTGCGGCGGCCGAATCTA
TACACCCACTACAGCAGCTCCTCACGATCTGTCCTCATCCGTTTGCAGAG
CGATCGAGTAGTCGAAGTGAGAAGAGGAGACGGTGACGAGGAGGACAGCG
ACGACGACGATGCCGACGATGTAGGCAAAGGCAGGGAAAGTGGCCGGCTG
CAGACCAGTGTGCTCCAGTTTGGGGCCTGCGGGTTGCGCGTATGTGGGCA
CAATGCCTGGTGGAGCGGCCTGAGCACGTCCATGAAGTTAGTCTGGGCCT
ATTACTTCTTTAATTGGACCGTCATCTTCCTTGCGCTAGCTGTCTGTTCG
TTGATTACAATAGTGTACGAGGCATTGGAGACAGTGGATAGCTTGGGGCA
AGCCGCCATTGTTATTGGGCTCCTGCCAGTCATAACGCTGCTGTGGCTCT
TCTTTAGCTTCGTGTATATTGTTTTGTTTTGGGGCGTATGGGATGACTTT
TATGATCTGGATGCATCGCTCTTTTCCTTAAGACGGAAACTACGGAGCTC
TTTTGCTAGAAGGACACTGACAGTCCTCGTTACCTTTCTCATTAATGGAC
CCGTACTCTTCAGTCTGGCTGTATTTGCGGTGCAGCTGAAGAAAACAGCC
AGTGACTGGCTGTGGCGAACCCAGTTCGTTCTGAGTTTTGCATGCAATGT
TGCGCTGGTCTTCCTCTTTTTTGGTGGAGCTTTGCTTGGACAGGACCACT
CTGTCCTTAGACAGGTCAAAGACCGCGAGGCGTTAGACGTGGCAGAGGGT
CTTTCAACTAGCTCTTCTTCTACTGGAGCGCATCGGTGTCTTGCACGGTG
GCGGCACTCGCTGCATATTATCCTTCACTCACAAGCTAGTGAAGCGATCA
GAATATATATGAGAAGCACCATTCAAGGGGGCGGCGCTCTCAGCAGCAGT
GATTCGCCCTGGGGGAAATATGCTGCAAAGTCTTTTCTGCCTCAGCCTAT
GGATTTAGATGGGGCAATAAACTACCCGTATGAGGCGGACACGGGTAACG
ACAACGACGGCGGCAGCAGCGAGGCTAAGCTAGAGGAGGAACGCATGGAG
GAACGAGAGGCGTACCAACGAGGACGCCGCCAGCAGCTAGCTAGCCAAGG
CGTCAAACCATGGCCAACTGCATGGCACGCAGGATGGTATTGCCTACACT
GGTGGAGTTGGAAGAGCAATTGGCGATTGGACGAAAACCGCTCCGTTCAA
GTACTGGTGACCCTACCTTGGAACCTCCTCCTCACCACCTTTCTTGTCTT
ACTGGCGTACACCGCACTCTCCGTCCGTGCATACATCCTCTTTGGCTTCA
TCATTTCCTACTATATCGCCGTGCCTGTACTTCGAGCCATCTTCGCAAGA
TTCATCGTCGTCTACTTGAGCCCCGCCGGTCTCTTGGCTATGGACGTCGC
ACTTACGCTTCTCCTTATCGCGGGCTTCTTGCTCTGCCTCTCCCTAGCAT
CCTATTACCTGGGCATAACAGTAATTCTTGTGATTATCTTGTCCAACGCC
CTGGTCCTGCTCGCACACTTCCCCGCCATCCGCGACAAACGAGTGCCCCC
ACCCCATACCTACGAAGAATGCCTCGCCTTTCACACTAAGGCTCGCACGC
ATGCCATCATCACAACGGCGCGTAAATGGGGGTTCGCCTCCATCCTCTTT
CTCGTCGTTTTAGTCCTTTGCCTACGGACAGTTCCTGAAAACTACCAACA
AGCCCACAATGCATACAAAGCTGCGAGAGGTGCTTCTCGAAACCCACTGC
TGATACAGCCACCACATCTCGCTTCGTCCCCTTCTGGCGCCGCCGCCGTC
GCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCA back to topCoding sequence (CDS) from alignment at scaffold_10:642396..646378+ >mRNA_4455 ID=mRNA_4455|Name=jgi.p|Nanoce1779_2|589186|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_10:642396..646378+ (Nannochloropsis oceanica) ATGATGAGGCTGGGGGGCCAAGGCACGAAGATCCTTTCAAGACGGCGGCC ACCACCATCACCAAGCGCAGCAGAAGCAGTACATTCAAGACAAGGAGCAA AAGCAGTGCGGCAACATTTATCAGCATGCATGGCAACATTTTCCCCTTCA CACCGCAGAGCCCATCGCCTCGCCCCAACCTTTGCCCTGTCGTCGTACCG AGCATTTAGCGTCTCCTCCTCAGTACCCACCACCGATCTCTCAACTTCAC CACTATCGCATTCGTCGTTGGAAGATTCTACCACCTGGCACGCCTGGATC TACGACTCCATCCCCGTGCAGGGCATGCAAGGCCTCCTTGAGACAATACA GGACACCACGGGTTTTCCCTGGTGGGCGTCCATCGTCGTCTCCACCTTGG CCTTCCGCATAACCTTGCTCCCTATTGTGAGGTACCAAGCACATGCCCTC GCACGCTTGGCCAAGGCCGGGCCGTTGCTCGTGGCGCTGAATCAAGCCCT TTCCAAGCGTCTCGACGGAATTCGCCCGGGGGACGTTAAGGCGACGACTG CAACCTGCAAGACTTATGCTGCCGGGGTTAATGCCGCACTGAAGGTCCAC CAGGTCGGACTGCTGGCTGCAGTCGCTTCGCCGTTGATTCAACTACCCGT TTTTATAACTTTTGCGTTGGCGAATCGTCGCATGATTGACACGCACGTCC CAGGGCTAGAAACCGGAGGCCTGGCGTGGTTTGAAGACCTAACCGAGGCC GACTCCCTCCTTATCCTCCCTGCACTCTGCCTGGGCTCCACCTACATGAA TTTAGAGTTGGGGTTTGCCCGCTTGCATGAATCGCAAACGATTCTGCGTT TTCTGAAGGATAATTTACAGTTGTTGCTCATATTGGGAGCTCCGGTTTCG TCCACCCTCCCGGCGGGTGTCTTTGTGTACTGGTTCACTTCCAGCATGTA TGGCCATGCCCAGCATTTTGCTCTGCGCAACGCAAGTGTCCGTGAGATGT TAGGTTTTCCTGTCATACCAGTACCAGGTGCTAGTGCGGGGGCTCCACCT GTCGGTACAAAAGAGGAGAAGTCGTCCCTACCTCCTCCCTCGGAGTCGCC GTCATCATCAGGAAGAGGAGGCGGGGCGGCCTTGGTCGATCCGCGGCTTT TGTCCCAAGCGCTGCAGGCTATCAAAAAGTACGAAATAAGAGTCGCCGCT CGTTTGAAGCAAAAGGGCAACAATCGCCAACAGGAAGGGAAGGAGGGCGA CGGAAAGAAACAGAGCGGCGGTCCGGTGCTCTCGACTACCCCGCCACCAA GAAGTAAAGGGGGAATGTGA back to top
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