jgi.p|Nanoce1779_2|623241, mRNA_4454 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|623241
Unique Name	mRNA_4454
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	843
Alignment location	scaffold_10:639562..642608 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	623327
Track	FilteredModels2
ProteinId	623241

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:639562..642608 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623241	gene_4454	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623241	mRNA_4454-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4454	CDS_4454	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:639562..642608+
coding sequence from alignment at scaffold_10:639562..642608+

mRNA sequence

>mRNA_4454 ID=mRNA_4454|Name=jgi.p|Nanoce1779_2|623241|organism=Nannochloropsis oceanica|type=mRNA|length=843bp
ATGAAATGGGTTGCCCTTTTCCTGTTGGTCGTTCAGAACACGGCCCTGGT
CCTGCTAATGCGCTCCTCTTTAACAGCCCCCGGCGAACACTACATCGTCA
CCACCGCCGTAGCGTGCATGGAGCCCCGCGAGCTCCTCCTCCTCTCCGTC
CCCTCCCTCCTCTACACCCTACAAAACAACCTTCTCTACATTGCACTGGC
CAACCTAGACGCTGCCATCTACCAAGTCTGCTACCAGCTTAAAATACTGA
CAACAGCCCTATTCTCCGTCATCCTTCTCAAACGCGCCCTAAGCCGCACC
AAGTGGATCTCCCTCATCATCCTCACTGTGGGGGTCTCGCTCACCGAGCT
GGACGCGCATAAAGTGAATAAATCGTCTTCCTCCTCAGAGGATCAGTCTC
CCACGCTTGGTTTCTTGTGCGTGCTCATGGCCTGTCTCACCTCGGGCTTT
GCGGGCGTGTGCATGTGGATCCGCAACATCCAAATGGGCGCCACCTCAGT
CGCTATGGCCCTTCTGGCAGTCTACAGCAAGGATGGAGCTGTCGTTGCCG
AGAAAGGATTCTTCTATGGGTACAACTGGGCGGTAGTCGGCGTCATCCTC
CTGCAAGCCTTGGGCGGGCTTGTCGTGGCCCTGGTGGTCGTACACGCGGA
CAATATTATGAAGGGATTTGGCTCGTCCATTTCGATTGTGTTGTCCTGCA
CGCTCGAATGGCTACTATTTGACTTTCAGCCCTCCCTCCTCTTTGTCCTG
GGGGCGGGCCTGGTTAATGTGGCCTTGTTCGTCTATCAACTTGAGGGGCT
GCCACGGTTTCCCGCGGGGGGGCAAGGCCGCAGGGCAGGATAA

protein sequence of jgi.p|Nanoce1779_2|623241

>mRNA_4454-protein ID=mRNA_4454-protein|Name=jgi.p|Nanoce1779_2|623241|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MKWVALFLLVVQNTALVLLMRSSLTAPGEHYIVTTAVACMEPRELLLLSV
PSLLYTLQNNLLYIALANLDAAIYQVCYQLKILTTALFSVILLKRALSRT
KWISLIILTVGVSLTELDAHKVNKSSSSSEDQSPTLGFLCVLMACLTSGF
AGVCMWIRNIQMGATSVAMALLAVYSKDGAVVAEKGFFYGYNWAVVGVIL
LQALGGLVVALVVVHADNIMKGFGSSISIVLSCTLEWLLFDFQPSLLFVL
GAGLVNVALFVYQLEGLPRFPAGGQGRRAG*

mRNA from alignment at scaffold_10:639562..642608+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4454 ID=mRNA_4454|Name=jgi.p|Nanoce1779_2|623241|organism=Nannochloropsis oceanica|type=mRNA|length=3047bp|location=Sequence derived from alignment at scaffold_10:639562..642608+ (Nannochloropsis oceanica)
ATGAAATGGGTTGCCCTTTTCCTGTTGGTCGTTCAGAACACGGCCCTGGT
CCTGCTAATGCGCTCCTCTTTAACAGCCCCCGGCGAACACTACATCGTCA
CCACCGCCGTAGCGTGCATGGAGGTGAGTCTGCTCCCTGGAAGGAAGGGG
GACCCCCCTTTCAAATGTAGCTTACTTTTTGTGTGCTTTATACTGACGCA
CCATAAACACGTACAACCAACGACACAGTGCGTCAAGGTCGTGACATGTA
TAGCCATGGAGGGATGGGTAAGTCTCGTCTCGGCGCCTTTGTCTCTTACC
ATTTCCTTCTCTTCAATTTGCCTTCCCTTCAGCTACTCTTCTTGCTGTCC
AACCCATCTTCCCTTTCTCCCTCCCTCCACCCCTACCCTCCATTTTTTTG
GGGGTAAATATGTTCATACGCAGAAATTCAAACTTCTTCCGGAATTCCTC
GCTCATCTCCGCCGCGAAATTCTCAAGCCCCGCGAGCTCCTCCTCCTCTC
CGTCCCCTCCCTCCTCTACACCCTACAAAACAACCTTCTCTACATTGCAC
TGGCCAACCTAGACGCTGCCATCTACCAAGTCTGCTACCAGCTTAAAATA
CTGACAACAGCCCTATTCTCCGTCATCCTTCTCAAACGCGCCCTAAGCCG
CACCAAGTGGATCTCCCTCATCATCCTCACTGTGGGGGTCTCGCTCACCG
AGCTGGACGCGCATAAAGTGAATAAATCGTCTTCCTCCTCAGAGGATCAG
TCTCCCACGCTTGGTTTCTTGTGCGTGCTCATGGCCTGTCTCACCTCGGG
CTTTGCGGGCGTGTGGTTCGAAAAGATTCTCAAGAATGTGGGCAGTCGTA
CTCCTGGCTTGCTTTCCGGCAAGGCTGCAGCAGCTGCTCCTGCTACTGCT
ACTGCTGAAGCTGCTGCCAAAGATGATGTAAGCACCGCCTCCTCTTCCTT
GCTGGTCGGAGCGGGGCCTACTACCCGTCGGGTGTCCACCGTCACCCCCT
CCTCGACCGCTCCCTCCACCGCTCCCTCCTCTCCCTCCATCACCGCTTCA
CCCTCATCCATCTCTACTTCTGCTGCTACCGCTGCTGCTGCCAACAGCAT
GTGGATCCGCAACATCCAAATGGGCGCCACCTCAGTCGCTATGGCCCTTC
TGGCAGTCTACAGCAAGGATGGAGCTGTCGTTGCCGAGAAAGGATTCTTC
TATGGGTACAACTGGGCGGTAGTCGGCGTCATCCTCCTGCAAGCCTTGGG
CGGGCTTGTCGTGGCCCTGGTGGTCGTACACGCGGACAATATTATGAAGG
GATTTGGCTCGTCCATTTCGATTGTGTTGTCCTGCACGCTCGAATGGCTA
CTATTTGACTTTCAGCCCTCCCTCCTCTTTGTCCTGGGGGCGGGCCTGGT
TAATGTGGCCTTGTTCGTCTATCAACTTGAGGGGCTGCCACGGTTTCCCG
CGGGGGGTAGTGGAGTAGCACGAGGAGGAGGGAAGGAGGAAGGGAAAGGA
AATGGAAATGGGGGCGTGATTGCTCTCCTTGGGGGCCTGGTCGGGATGAG
AGAGGCTGGCAGCAGCTCTAGCGGCAGTGGTGGGTCGTCCTCCTTTTCTA
CCCCATCTGGCGGGGGTATTTTGCCGTCAGTCCACATTCCCAAATCCCAC
GCCCGGGACGTGAAGGGGTGGTTTAACGTGGGGAGTGCTCGTAAAGCTGC
CTTGTCCCCACCAGCTGCGTCTGCGATCTCAGCGATGTATTTGCCTTTTA
AAAACAGCTTTGATATCCCCGCATCCTCCTCTTCCTCGAAAGCGGGAGGA
ATGGCTGAGTGGCGACAAGCACATGCAGCCATCACTAGTAGTAGGGGAGG
GAGGGAGGGAGGAGTAAAGGAATTATTGTAGAGTAGGTGCTGCTGCAGCT
GCAACAGCAGCCCCAGCAACAGCCAAAAGTATACCATGAAACGTGGTGGT
AATTAACATGTGCAGGGAAAAGATCAAATCGAGGAGAAAAGAGGGAGCGG
AGTGACTAGAACGCAGTGCATTTCTAAATCCGAATATTTTCTACATTATT
GCTTTCATATATATAACAACATGCGAACCGAGAATAGGGGGTTTGAACGA
AGGAAAATTAAATTATAAGAGGGATAGCACGCGAAACGTAGCACCAAAAG
TACAACGCCGCTGGTAAGACGCCCCTTCGCAATAGATTAGATAAACAGTC
AGTCCGTCAGTCAGGCTTTGAACTCCCAGTGTGTGAACTCACGCCACATA
AACAAAGAATGAGACCAATTAGACACCGTCAATTTCATTGATTGAACCAC
TTTCTTTTAACTACATCCCATCCTCACCCCTTCTTCGCCTTGTGCTTGCC
CTTGCCTTTCCGTGAACGGGTAGGGGATTCGCCTGCACCAGACCCGTCCA
ATCCTTGCTCCCCGGCCTTCCCCGTGATGATCAGTCCGACTAATCGCTTG
ATCTTATTCAACTCGGCTTGTCGCCGTGTCTTGTACTTGGCCGTCTTGCG
ATCGTCCGTGACCCGCAACGACAGCTTGGAATCGCAGTGACGGTACTTTA
GCACCAACCGTGCCTTCTCCCCACTCCGCGCAAACAGATCCACTACATGC
TCCTGTAGAATCTCCACCGAAGCCGTCTTGGTCGTGTTGCACTTCTCACC
TGCGCCCGTCATATTGGCCAGCTTTTTAAAGTGGCTCCTACACGCCTGTG
ATGAGGGGAGACGGGGAGGAGGGAGCAAAAGAGGGGAAAGCACAGCAAGC
GTTTGCAATCATTGTAGGCAATGAAACAAGAAACTAACCCGAAAAGCATG
ATGAGCATGAATTCAGGCATGTCATGCTTGTCGACCGCTGGGCAGGTGGT
CGAATGTCTTTGCGTCCTCGGTGAAATATATGGTCTCTAGTGCCTGATAT
GTCCTCTCCCACGCCTGTCCCCATCACCGTCTGATTCGATAGTTCTTCCG
GAGCACTGACACTCACTCAATCAGCTCCACTGCCACTATTCATACAGGCA
TTATAAGAAGCGCACTTATGCCAGGGCAAGGCCGCAGGGCAGGATAA

Coding sequence (CDS) from alignment at scaffold_10:639562..642608+

>mRNA_4454 ID=mRNA_4454|Name=jgi.p|Nanoce1779_2|623241|organism=Nannochloropsis oceanica|type=CDS|length=3372bp|location=Sequence derived from alignment at scaffold_10:639562..642608+ (Nannochloropsis oceanica)
ATGAAATGGGTTGCCCTTTTCCTGTTGGTCGTTCAGAACACGGCCCTGGT
CCTGCTAATGCGCTCCTCTTTAACAGCCCCCGGCGAACACTACATCGTCA
CCACCGCCGTAGCGTGCATGGAGCCCCGCGAGCTCCTCCTCCTCTCCGTC
CCCTCCCTCCTCTACACCCTACAAAACAACCTTCTCTACATTGCACTGGC
CAACCTAGACGCTGCCATCTACCAAGTCTGCTACCAGCTTAAAATACTGA
CAACAGCCCTATTCTCCGTCATCCTTCTCAAACGCGCCCTAAGCCGCACC
AAGTGGATCTCCCTCATCATCCTCACTGTGGGGGTCTCGCTCACCGAGCT
GGACGCGCATAAAGTGAATAAATCGTCTTCCTCCTCAGAGGATCAGTCTC
CCACGCTTGGTTTCTTGTGCGTGCTCATGGCCTGTCTCACCTCGGGCTTT
GCGGGCGTGTGCATGTGGATCCGCAACATCCAAATGGGCGCCACCTCAGT
CGCTATGGCCCTTCTGGCAGTCTACAGCAAGGATGGAGCTGTCGTTGCCG
AGAAAGGATTCTTCTATGGGTACAACTGGGCGGTAGTCGGCGTCATCCTC
CTGCAAGCCTTGGGCGGGCTTGTCGTGGCCCTGGTGGTCGTACACGCGGA
CAATATTATGAAGGGATTTGGCTCGTCCATTTCGATTGTGTTGTCCTGCA
CGCTCGAATGGCTACTATTTGACTTTCAGCCCTCCCTCCTCTTTGTCCTG
GGGGCGGGCCTGGTTAATGTGGCCTTGTTCGTCTATCAACTTGAGGGGCT
GCCACGGTTTCCCGCGGGGGGGCAAGGCCGCAGGGCAGGATAAATGAAAT
GGGTTGCCCTTTTCCTGTTGGTCGTTCAGAACACGGCCCTGGTCCTGCTA
ATGCGCTCCTCTTTAACAGCCCCCGGCGAACACTACATCGTCACCACCGC
CGTAGCGTGCATGGAGCCCCGCGAGCTCCTCCTCCTCTCCGTCCCCTCCC
TCCTCTACACCCTACAAAACAACCTTCTCTACATTGCACTGGCCAACCTA
GACGCTGCCATCTACCAAGTCTGCTACCAGCTTAAAATACTGACAACAGC
CCTATTCTCCGTCATCCTTCTCAAACGCGCCCTAAGCCGCACCAAGTGGA
TCTCCCTCATCATCCTCACTGTGGGGGTCTCGCTCACCGAGCTGGACGCG
CATAAAGTGAATAAATCGTCTTCCTCCTCAGAGGATCAGTCTCCCACGCT
TGGTTTCTTGTGCGTGCTCATGGCCTGTCTCACCTCGGGCTTTGCGGGCG
TGTGCATGTGGATCCGCAACATCCAAATGGGCGCCACCTCAGTCGCTATG
GCCCTTCTGGCAGTCTACAGCAAGGATGGAGCTGTCGTTGCCGAGAAAGG
ATTCTTCTATGGGTACAACTGGGCGGTAGTCGGCGTCATCCTCCTGCAAG
CCTTGGGCGGGCTTGTCGTGGCCCTGGTGGTCGTACACGCGGACAATATT
ATGAAGGGATTTGGCTCGTCCATTTCGATTGTGTTGTCCTGCACGCTCGA
ATGGCTACTATTTGACTTTCAGCCCTCCCTCCTCTTTGTCCTGGGGGCGG
GCCTGGTTAATGTGGCCTTGTTCGTCTATCAACTTGAGGGGCTGCCACGG
TTTCCCGCGGGGGGGCAAGGCCGCAGGGCAGGATAAATGAAATGGGTTGC
CCTTTTCCTGTTGGTCGTTCAGAACACGGCCCTGGTCCTGCTAATGCGCT
CCTCTTTAACAGCCCCCGGCGAACACTACATCGTCACCACCGCCGTAGCG
TGCATGGAGCCCCGCGAGCTCCTCCTCCTCTCCGTCCCCTCCCTCCTCTA
CACCCTACAAAACAACCTTCTCTACATTGCACTGGCCAACCTAGACGCTG
CCATCTACCAAGTCTGCTACCAGCTTAAAATACTGACAACAGCCCTATTC
TCCGTCATCCTTCTCAAACGCGCCCTAAGCCGCACCAAGTGGATCTCCCT
CATCATCCTCACTGTGGGGGTCTCGCTCACCGAGCTGGACGCGCATAAAG
TGAATAAATCGTCTTCCTCCTCAGAGGATCAGTCTCCCACGCTTGGTTTC
TTGTGCGTGCTCATGGCCTGTCTCACCTCGGGCTTTGCGGGCGTGTGCAT
GTGGATCCGCAACATCCAAATGGGCGCCACCTCAGTCGCTATGGCCCTTC
TGGCAGTCTACAGCAAGGATGGAGCTGTCGTTGCCGAGAAAGGATTCTTC
TATGGGTACAACTGGGCGGTAGTCGGCGTCATCCTCCTGCAAGCCTTGGG
CGGGCTTGTCGTGGCCCTGGTGGTCGTACACGCGGACAATATTATGAAGG
GATTTGGCTCGTCCATTTCGATTGTGTTGTCCTGCACGCTCGAATGGCTA
CTATTTGACTTTCAGCCCTCCCTCCTCTTTGTCCTGGGGGCGGGCCTGGT
TAATGTGGCCTTGTTCGTCTATCAACTTGAGGGGCTGCCACGGTTTCCCG
CGGGGGGGCAAGGCCGCAGGGCAGGATAAATGAAATGGGTTGCCCTTTTC
CTGTTGGTCGTTCAGAACACGGCCCTGGTCCTGCTAATGCGCTCCTCTTT
AACAGCCCCCGGCGAACACTACATCGTCACCACCGCCGTAGCGTGCATGG
AGCCCCGCGAGCTCCTCCTCCTCTCCGTCCCCTCCCTCCTCTACACCCTA
CAAAACAACCTTCTCTACATTGCACTGGCCAACCTAGACGCTGCCATCTA
CCAAGTCTGCTACCAGCTTAAAATACTGACAACAGCCCTATTCTCCGTCA
TCCTTCTCAAACGCGCCCTAAGCCGCACCAAGTGGATCTCCCTCATCATC
CTCACTGTGGGGGTCTCGCTCACCGAGCTGGACGCGCATAAAGTGAATAA
ATCGTCTTCCTCCTCAGAGGATCAGTCTCCCACGCTTGGTTTCTTGTGCG
TGCTCATGGCCTGTCTCACCTCGGGCTTTGCGGGCGTGTGCATGTGGATC
CGCAACATCCAAATGGGCGCCACCTCAGTCGCTATGGCCCTTCTGGCAGT
CTACAGCAAGGATGGAGCTGTCGTTGCCGAGAAAGGATTCTTCTATGGGT
ACAACTGGGCGGTAGTCGGCGTCATCCTCCTGCAAGCCTTGGGCGGGCTT
GTCGTGGCCCTGGTGGTCGTACACGCGGACAATATTATGAAGGGATTTGG
CTCGTCCATTTCGATTGTGTTGTCCTGCACGCTCGAATGGCTACTATTTG
ACTTTCAGCCCTCCCTCCTCTTTGTCCTGGGGGCGGGCCTGGTTAATGTG
GCCTTGTTCGTCTATCAACTTGAGGGGCTGCCACGGTTTCCCGCGGGGGG
GCAAGGCCGCAGGGCAGGATAA

Synonyms

Publications