jgi.p|Nanoce1779_2|589176, mRNA_4453 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589176
Unique Name	mRNA_4453
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2876
Alignment location	scaffold_10:632548..636062 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589262
Track	FilteredModels2
ProteinId	589176

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:632548..636062 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589176	gene_4453	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589176	mRNA_4453-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4453	CDS_4453	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:632548..636062+
coding sequence from alignment at scaffold_10:632548..636062+

mRNA sequence

>mRNA_4453 ID=mRNA_4453|Name=jgi.p|Nanoce1779_2|589176|organism=Nannochloropsis oceanica|type=mRNA|length=2876bp
GGCAGGGGCAGCACCATCCCCTGCTGCTGTTGCTGCTGTTGCTGCTGTTG
ATGTCCTTGTTCTTGTTGCTGATCTTCTTGCTGGCGTTCTTGTTGCCTTT
TCTGCTGCTGCTGCTGCTGCTGTGCACGTTGCGTTGGGCTGTGACGGGAA
TGGCCAAGGAGGTGCGGCTCCGGACTGGGACTCGAACCGTACAGCTCAGT
AGCGACTCTCTCTGCGCTCTCCTCCGCTGCTGTCACGCCGTCTGGCGAAA
TCTGGTTGCACATGTGCTGCTGCTCCTGCTGTATATCTTTAAATAAACCG
ATGCCACTGCCAGTGCCCCCCTGCAAGAGGAAGAGCTGCGCCTGGGTCAG
CTGAACAGTAGGGAGGTCTTGGTCCATGGCGCCTCCGTGGCTGCTGCTCC
CGTCCAAGCTATTGTTGCCTGGAAGGCGATGTTGCTGTTGTTCTTCACGG
TGCTGCTGGTGCGGCTCCTCTTGCTCCCGCTTAGGCCGCTCTTGATGCTG
CACTGTGTTGTAGAATTGCGAGGCGCTGCGGTTTTGGTTCCCCAGGCATT
CAGAAATCCTTCCACCCCCCCACGACACGCCTGTCTGATGCGACGCCATG
CTACTCAAACTAGACAAATGAGAAGAGGTGTGCTGGGGCTGGCTGTGGAA
GTGGTGCTCGTTGTGATGAGGTAGAGGGTCAGAGGCATGCTTGGAAAGAG
GCACCGGTTGAGGACCGCTCGTCTCAGCCGACAACACCGTCATCCCCCGC
CGCAAGGGCCGGAACATAGCGTCGTCACCGTGTGCATCCAAAAAAATTTC
ATCGTCCTCCTCCTCATTTAACAAATCCTGGCCATGCCCCGACGCCCCCA
CTCTTTCCCCTCTCCTTTCTAACACCAGATGGTGATGCTCGTCGTCATCG
TCTTCGTCATCGTGCTCCGGCAAAGCAGTAGGCAATGCCCCAAATGTATC
CCTCAAGTGGTGCCTCGACGACCCCCCGACCTCATGTTCGTCTGTACATC
CGGATCCGCAATATACTTGCTTCTTGTCAACGGCAAGATCGATAACATAG
CCGCACCCGCGTAACCCTCCGTCGGTGCCGCAAATGACCGAAACCGCACC
AAGGCCGTTATCTCCGTATTCCGCTTATCAATGCATTTGCAAATCCAAGC
CGCCTCAGGTACCTCCCGAGACACTGGCCCCGGGCTTGCCGAGTCCCTAC
TGCTCGTACTACCGCTACTGCTGTTCATGCTGCTGATACTCCCATTACTT
CCCCCCACCCCTACACCAGAGCTCGGCCGCCGCCTAAACCAATGCGCGCC
AATTGCTGCATAAACATCAGGTAGGTCGTCAGGGTGGAATATCTCCGCCA
ACAACAGTATCGGCAACACTGCGAAGCTCTCCACCTTCCCCTCCACCTCC
TCGCGTGTCATGAATGTAGCGGCGAACCTCTCGTCTGTAAACACGAACAA
CTCGTCCTGGATAAACATGAACCCACACAACATCGACACTCCATCATCCA
TCTTCCTCAAATCATCGGGCAGATTCCAAGGACCCATTCCCTCCTTCGAC
CCCGGGTGCGACAAGAGCTGGGCTTGTTGCGCCGCCTGGCTCTTGCTTCT
CGTCGCAGGACTACAGGCAATCGGGCCCGAGCCCGTTGGGGCGGGCCCAA
CCACTTCTTGGAGCTGGTCACAGATACCGAAGGTCATGTCGACCCCTGAG
GCGAGGATGGAGGACGTCTTGGTCCAGAGGTTCCTGAGCATAATACACTT
GGACGTATCCAACTCATTGTCATGCCAGGCCTTCAGAAACGCCTCCTTGC
AATGCCGCGCCGCCTCGAAGAAGAATCGACAGTGCCAAGGGTCCCTTGGA
GGGGATTGTCTCGTAGAAGCAGCAGCAGCCACTACCACCAAGTCCTGCTC
TTGCTGTAACAACCCGTTACCAGACAAAGAGCGAGAGAGGGAGGAGGCAG
TGGAAGATGCGGCGGAGGTGGTGGCACTGCTGTTGGTGCTATGCTGGGTG
CTGTTGAGGGAAGAGCGCACATCTCCCCGGGAGCCACCATGGCGGGAACT
GCCCAGAGTGAGGGAGGAAGAGGAGGAGGAGCCTCTGCTGCTCTTACTGC
CTGGAGGACGACCGGGTCCGCGGATTTGGGGCACGCACTTGATGCCTCGG
GAGGTGCATATTTGGCAGGGGTTGCGACGGTTACAGCGTTTCTTGGATCG
CTTGCAGGCCTCGCAGCTGTGCTCCATATATCTGGGGTCGCCCTTGTGCG
CGGCGAAGTCGTCGTAATGCCCACTCGAATCAATCAGGGACTCGTGCCCC
GATGCATCCATCATGCTATGGCTGGAGGCGTCGATCATGGAATGCCCCGA
GGCATCCACACGATGGTAGCTCCGGTCAGTGTGACAGCTGGAGTCCACCG
CAGTATGATATGAGGCGTCCTCCTCCTTCGCGTGCCAGTCCATCCCTCCC
CCTCGGACGCTTCCATGGTTGTTGTGATTTATGTGGTGACCCCCATCACC
GTGGATGTGGCCATTGTGGGGGTTAGGCATCAAGAGACCCGCGCCCCCGT
GCTGTGACGCCCCCCGCTCTTGGTGCCCATGGCCCTGCCCGTTGGTTTGC
CCTTGCGACTGCCCTCCGACGCTACAGCTGCTCAAGGGATCCTGCTCTGA
CACGTACGGCATGTCGAAGATGATGCGGTCCAACTCATCGAAATGGTCTG
TATCCATCTCGTCCTCCGTGCCACTGCCTGCAGCGTGTTGGCCGAGGGCC
ACGACGCTCTGAGCGTCCTCATCGTAAAATGCACTCCCCATCGCCCCCAA
CGAGGAGGGGGGCTGTCCAAGGAGGGTCGTCATGCCGACTACCGCACTGT
TGCTGTTGCTGGTGGTGTTGCTGGTG

protein sequence of jgi.p|Nanoce1779_2|589176

>mRNA_4453-protein ID=mRNA_4453-protein|Name=jgi.p|Nanoce1779_2|589176|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MNVAANLSSVNTNNSSWINMNPHNIDTPSSIFLKSSGRFQGPIPSFDPGC
DKSWACCAAWLLLLVAGLQAIGPEPVGAGPTTSWSWSQIPKVMSTPEARM
EDVLVQRFLSIIHLDVSNSLSCQAFRNASLQCRAASKKNRQCQGSLGGDC
LVEAAAATTTKSCSCCNNPLPDKEREREEAVEDAAEVVALLLVLCWVLLR
EERTSPREPPWRELPRVREEEEEEPLLLLLPGGRPGPRIWGTHLMPREVH
IWQGLRRLQRFLDRLQASQLCSIYLGSPLCAAKSS*

mRNA from alignment at scaffold_10:632548..636062+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4453 ID=mRNA_4453|Name=jgi.p|Nanoce1779_2|589176|organism=Nannochloropsis oceanica|type=mRNA|length=3515bp|location=Sequence derived from alignment at scaffold_10:632548..636062+ (Nannochloropsis oceanica)
GGCAGGGGCAGCACCATCCCCTGCTGCTGTTGCTGCTGTTGCTGCTGTTG
ATGTCCTTGTTCTTGTTGCTGATCTTCTTGCTGGCGTTCTTGTTGCCTTT
TCTGCTGCTGCTGCTGCTGCTGTGCACGTTGCGTTGGGCTGTGACGGGAA
TGGCCAAGGAGGTGCGGCTCCGGACTGGGACTCGAACCGTACAGCTCAGT
AGCGACTCTCTCTGCGCTCTCCTCCGCTGCTGTCACGCCGTCTGGCGAAA
TCTGGTTGCACATGTGCTGCTGCTCCTGCTGTATATCTTTAAATAAACCG
ATGCCACTGCCAGTGCCCCCCTGCAAGAGGAAGAGCTGCGCCTGGGTCAG
CTGAACAGTAGGGAGGTCTTGGTCCATGGCGCCTCCGTGGCTGCTGCTCC
CGTCCAAGCTATTGTTGCCTGGAAGGCGATGTTGCTGTTGTTCTTCACGG
TGCTGCTGGTGCGGCTCCTCTTGCTCCCGCTTAGGCCGCTCTTGATGCTG
CACTGTGTTGTAGAATTGCGAGGCGCTGCGGTTTTGGTTCCCCAGGCATT
CAGAAATCCTTCCACCCCCCCACGACACGCCTGTCTGATGCGACGCCATG
CTACTCAAACTAGACAAATGAGAAGAGGTGTGCTGGGGCTGGCTGTGGAA
GTGGTGCTCGTTGTGATGAGGTAGAGGGTCAGAGGCATGCTTGGAAAGAG
GCACCGGTTGAGGACCGCTCGTCTCAGCCGACAACACCGTCATCCCCCGC
CGCAAGGGCCGGAACATAGCGTCGTCACCGTGTGCATCCAAAAAAATTTC
ATCGTCCTCCTCCTCATTTAACAAATCCTGGCCATGCCCCGACGCCCCCA
CTCTTTCCCCTCTCCTTTCTAACACCAGATGGTGATGCTCGTCGTCATCG
TCTTCGTCATCGTGCTCCGGCAAAGCAGTAGGCAATGCCCCAAATGTATC
CCTCAAGTGGTGCCTCGACGACCCCCCGACCTCATGTTCGTCTGTACATC
CGGATCCGCAATATACTTGCTTCTTGTCAACGGCAAGATCGATAACATAG
CCGCACCCGCGTAACCCTCCGTCGGTGCCGCAAATGACCGAAACCGCACC
AAGGCCGTTATCTCCGTATTCCGCTTATCAATGCATTTGCAAATCCAAGC
CGCCTCAGGTACCTCCCGAGACACTGGCCCCGGGCTTGCCGAGTCCCTAC
TGCTCGTACTACCGCTACTGCTGTTCATGCTGCTGATACTCCCATTACTT
CCCCCCACCCCTACACCAGAGCTCGGCCGCCGCCTAAACCAATGCGCGCC
AATTGCTGCATAAACATCAGGTAGGTCGTCAGGGTGGAATATCTCCGCCA
ACAACAGTATCGGCAACACTGCGAAGCTCTCCACCTTCCCCTCCACCTCC
TCGCGTGTCATGAATGTAGCGGCGAACCTCTCGTCTGTAAACACGAACAA
CTCGTCCTGGATAAACATGAACCCACACAACATCGACACTCCATCATCCA
TCTTCCTCAAATCATCGGGCAGATTCCAAGGACCCATTCCCTCCTTCGAC
CCCGGGTGCGACAAGAGCTGGGCTTGTTGCGCCGCCTGGCTCTTGCTTCT
CGTCGCAGGACTACAGGCAATCGGGCCCGAGCCCGTTGGGGCGGGCCCAA
CCACTTCTTGGAGCTGGTCACAGATACCGAAGGTCATGTCGACCCCTGAG
GCGAGGATGGAGGACGTCTTGGTCCAGAGGTTCCTGGGAGGATAAAAAGG
AGGGGGGGGGGGAAGGTGAAGGGGGTGAGTGAGTGAGAGAAGGGAGGGGA
ATGACCAACAGAACTACCCCACCGACCCATACACATCGGGTAACCAAGTC
GCCCAAAAAAACTTGCACGCACGTACCTGAGCATAATACACTTGGACGTA
TCCAACTCATTGTCATGCCAGGCCTTCAGAAACGCCTCCTTGCAATGCCG
CGCCGCCTCGAAGAAGAATCGACAGTGCCAAGGGTCCCTTGGAGGGGATT
GTCTCGTAGAAGCAGCAGCAGCCACTACCACCAAGTCCTGCTCTTGCTGT
AACAACCCGTTACCAGACAAAGAGCGAGAGAGGGAGGAGGCAGTGGAAGA
TGCGGCGGAGGTGGTGGCACTGCTGTTGGTGCTATGCTGGGTGCTGTTGA
GGGAAGAGCGCACATCTCCCCGGGAGCCACCATGGCGGGAACTGCCCAGA
GTGAGGGAGGAAGAGGAGGAGGAGCCTCTGCTGCTCTTACTGCCTGGAGG
ACGACCGGGTCCGCGGATTTGGGGCACGCACTTGATGCCTCGGGAGGTGC
ATATTTGGCAGGGGTTGCGACGGTTACAGCGTTTCTGGGGGAGAAGTAGG
GAGGAGAGTGTGGGTTGAATTGAATGATCAGCACCATCGATTTCCGTGAA
AAAACATGGGAGGACGTGTAATGTGTAGCCGTGGTGGGGCCTTTGCACGG
ACGAAAAGGGAGAGGGAGTCTCACGGCGGGTTAATTAATGTTCGGGGATA
GATCGACAAGTGGTTGCATGTGACTTGAGGTACACTCAATACAAAAAATG
GAAGGGCAAATACAAATGTGCAGTAAGGCCTGGAGACAATTAATTCGACA
TCTTGAAATGAGAGTAGAAAGTGAGGCTGGGGGCCGTTGTAAAATGGAGA
AGGGCGACAGTCGCCACAAGCAGATGGAGCTCAGTTCAGATGCTGGACGA
GACAAAACACACGAAAAGAAGGGACAACCAAACCAACCAACAATTATCAT
TAAGCCGTGTGTGTCGAAGATTCACGGACTATCCCAAAGCAAATACCTAT
CATTTCAAACTCCATCCCACCGCTCCTTACCTTGGATCGCTTGCAGGCCT
CGCAGCTGTGCTCCATATATCTGGGGTCGCCCTTGTGCGCGGCGAAGTCG
TCGTAATGCCCACTCGAATCAATCAGGGACTCGTGCCCCGATGCATCCAT
CATGCTATGGCTGGAGGCGTCGATCATGGAATGCCCCGAGGCATCCACAC
GATGGTAGCTCCGGTCAGTGTGACAGCTGGAGTCCACCGCAGTATGATAT
GAGGCGTCCTCCTCCTTCGCGTGCCAGTCCATCCCTCCCCCTCGGACGCT
TCCATGGTTGTTGTGATTTATGTGGTGACCCCCATCACCGTGGATGTGGC
CATTGTGGGGGTTAGGCATCAAGAGACCCGCGCCCCCGTGCTGTGACGCC
CCCCGCTCTTGGTGCCCATGGCCCTGCCCGTTGGTTTGCCCTTGCGACTG
CCCTCCGACGCTACAGCTGCTCAAGGGATCCTGCTCTGACACGTACGGCA
TGTCGAAGATGATGCGGTCCAACTCATCGAAATGGTCTGTATCCATCTCG
TCCTCCGTGCCACTGCCTGCAGCGTGTTGGCCGAGGGCCACGACGCTCTG
AGCGTCCTCATCGTAAAATGCACTCCCCATCGCCCCCAACGAGGAGGGGG
GCTGTCCAAGGAGGGTCGTCATGCCGACTACCGCACTGTTGCTGTTGCTG
GTGGTGTTGCTGGTG

Coding sequence (CDS) from alignment at scaffold_10:632548..636062+

>mRNA_4453 ID=mRNA_4453|Name=jgi.p|Nanoce1779_2|589176|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_10:632548..636062+ (Nannochloropsis oceanica)
ATGAATGTAGCGGCGAACCTCTCGTCTGTAAACACGAACAACTCGTCCTG
GATAAACATGAACCCACACAACATCGACACTCCATCATCCATCTTCCTCA
AATCATCGGGCAGATTCCAAGGACCCATTCCCTCCTTCGACCCCGGGTGC
GACAAGAGCTGGGCTTGTTGCGCCGCCTGGCTCTTGCTTCTCGTCGCAGG
ACTACAGGCAATCGGGCCCGAGCCCGTTGGGGCGGGCCCAACCACTTCTT
GGAGCTGGTCACAGATACCGAAGGTCATGTCGACCCCTGAGGCGAGGATG
GAGGACGTCTTGGTCCAGAGGTTCCTGAGCATAATACACTTGGACGTATC
CAACTCATTGTCATGCCAGGCCTTCAGAAACGCCTCCTTGCAATGCCGCG
CCGCCTCGAAGAAGAATCGACAGTGCCAAGGGTCCCTTGGAGGGGATTGT
CTCGTAGAAGCAGCAGCAGCCACTACCACCAAGTCCTGCTCTTGCTGTAA
CAACCCGTTACCAGACAAAGAGCGAGAGAGGGAGGAGGCAGTGGAAGATG
CGGCGGAGGTGGTGGCACTGCTGTTGGTGCTATGCTGGGTGCTGTTGAGG
GAAGAGCGCACATCTCCCCGGGAGCCACCATGGCGGGAACTGCCCAGAGT
GAGGGAGGAAGAGGAGGAGGAGCCTCTGCTGCTCTTACTGCCTGGAGGAC
GACCGGGTCCGCGGATTTGGGGCACGCACTTGATGCCTCGGGAGGTGCAT
ATTTGGCAGGGGTTGCGACGGTTACAGCGTTTCTTGGATCGCTTGCAGGC
CTCGCAGCTGTGCTCCATATATCTGGGGTCGCCCTTGTGCGCGGCGAAGT
CGTCGTAAATGAATGTAGCGGCGAACCTCTCGTCTGTAAACACGAACAAC
TCGTCCTGGATAAACATGAACCCACACAACATCGACACTCCATCATCCAT
CTTCCTCAAATCATCGGGCAGATTCCAAGGACCCATTCCCTCCTTCGACC
CCGGGTGCGACAAGAGCTGGGCTTGTTGCGCCGCCTGGCTCTTGCTTCTC
GTCGCAGGACTACAGGCAATCGGGCCCGAGCCCGTTGGGGCGGGCCCAAC
CACTTCTTGGAGCTGGTCACAGATACCGAAGGTCATGTCGACCCCTGAGG
CGAGGATGGAGGACGTCTTGGTCCAGAGGTTCCTGAGCATAATACACTTG
GACGTATCCAACTCATTGTCATGCCAGGCCTTCAGAAACGCCTCCTTGCA
ATGCCGCGCCGCCTCGAAGAAGAATCGACAGTGCCAAGGGTCCCTTGGAG
GGGATTGTCTCGTAGAAGCAGCAGCAGCCACTACCACCAAGTCCTGCTCT
TGCTGTAACAACCCGTTACCAGACAAAGAGCGAGAGAGGGAGGAGGCAGT
GGAAGATGCGGCGGAGGTGGTGGCACTGCTGTTGGTGCTATGCTGGGTGC
TGTTGAGGGAAGAGCGCACATCTCCCCGGGAGCCACCATGGCGGGAACTG
CCCAGAGTGAGGGAGGAAGAGGAGGAGGAGCCTCTGCTGCTCTTACTGCC
TGGAGGACGACCGGGTCCGCGGATTTGGGGCACGCACTTGATGCCTCGGG
AGGTGCATATTTGGCAGGGGTTGCGACGGTTACAGCGTTTCTTGGATCGC
TTGCAGGCCTCGCAGCTGTGCTCCATATATCTGGGGTCGCCCTTGTGCGC
GGCGAAGTCGTCGTAAATGAATGTAGCGGCGAACCTCTCGTCTGTAAACA
CGAACAACTCGTCCTGGATAAACATGAACCCACACAACATCGACACTCCA
TCATCCATCTTCCTCAAATCATCGGGCAGATTCCAAGGACCCATTCCCTC
CTTCGACCCCGGGTGCGACAAGAGCTGGGCTTGTTGCGCCGCCTGGCTCT
TGCTTCTCGTCGCAGGACTACAGGCAATCGGGCCCGAGCCCGTTGGGGCG
GGCCCAACCACTTCTTGGAGCTGGTCACAGATACCGAAGGTCATGTCGAC
CCCTGAGGCGAGGATGGAGGACGTCTTGGTCCAGAGGTTCCTGAGCATAA
TACACTTGGACGTATCCAACTCATTGTCATGCCAGGCCTTCAGAAACGCC
TCCTTGCAATGCCGCGCCGCCTCGAAGAAGAATCGACAGTGCCAAGGGTC
CCTTGGAGGGGATTGTCTCGTAGAAGCAGCAGCAGCCACTACCACCAAGT
CCTGCTCTTGCTGTAACAACCCGTTACCAGACAAAGAGCGAGAGAGGGAG
GAGGCAGTGGAAGATGCGGCGGAGGTGGTGGCACTGCTGTTGGTGCTATG
CTGGGTGCTGTTGAGGGAAGAGCGCACATCTCCCCGGGAGCCACCATGGC
GGGAACTGCCCAGAGTGAGGGAGGAAGAGGAGGAGGAGCCTCTGCTGCTC
TTACTGCCTGGAGGACGACCGGGTCCGCGGATTTGGGGCACGCACTTGAT
GCCTCGGGAGGTGCATATTTGGCAGGGGTTGCGACGGTTACAGCGTTTCT
TGGATCGCTTGCAGGCCTCGCAGCTGTGCTCCATATATCTGGGGTCGCCC
TTGTGCGCGGCGAAGTCGTCGTAA

Synonyms

Publications