jgi.p|Nanoce1779_2|639177, mRNA_4450 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|639177
Unique Name	mRNA_4450
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	786
Alignment location	scaffold_10:628905..629690 -

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Properties


Property Name	Value
TranscriptId	639263
Track	FilteredModels2
ProteinId	639177

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:628905..629690 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639177	gene_4450	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4450	CDS_4450	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639177	mRNA_4450-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:628905..629690-
coding sequence from alignment at scaffold_10:628905..629690-

mRNA sequence

>mRNA_4450 ID=mRNA_4450|Name=jgi.p|Nanoce1779_2|639177|organism=Nannochloropsis oceanica|type=mRNA|length=786bp
ATGACAACGGCAGCCAAATCAACATGGAACTCTAAGCAGGGGGGGGCCTC
TGACCTGGGCAGCTGGAGCCTCGGCGGGCAGACGTCCCGGCAATTTTCTG
TCCTTGACATGCCCGCGCACAAGACCCTCAAGTATCGGAAAACGGGCCAA
AACACGGCGGCGGAGTTGCGCAAAAAGGATTTGCGGAGCGTGCTGGACGA
GAAGGAGCGGGCGGCACACATGGCCAAGCTGCAGGAACGTGGCAAGGGAG
GGGATTTGGGCGCCCGCGAAGAGCTGCGGCGGTTGGAGGCGGGAGAGGCC
GCAGCCACGCCCTTGTTGCTCAAGGACAAAGAAGAACTTCGCCAAGCCAC
CCAGCGCTTTGACGATCGCGATGATGAGGCGAATGATGACGATGATGATG
CGGGCGGGGTGGGTGGGACCGGGATTGAGAGTGATTTGGATAGCAGCGAC
GACAGCGACGATGACGATGACGACGACGACGAAGACCTGTTACGTTTGGA
GTTGGAAAAAATCAAGCAGGAGCGGGAAGAGGCTCGTCGGAAGCAGGAGG
ATGAGGACAAGGCCGAGGCAGCCCGAATGAAGGAGGATGAAATCAATGCG
GCGGCCTTGAAGGGAAACCCGCTCCTAGCAAGTGGTACTGGTAGTGCACA
GATCAAGCGTAAATGGAACGACGACGTGGTCTTCAAGAACCAATCTCGGG
GGGAGACGGAGAAGAAGAAGAAGTTTGTAAACGATACGATCCGCAATCCG
TTCCACAAGGCTTTCTTGCAGCGGTACATGAAGTAA

protein sequence of jgi.p|Nanoce1779_2|639177

>mRNA_4450-protein ID=mRNA_4450-protein|Name=jgi.p|Nanoce1779_2|639177|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MTTAAKSTWNSKQGGASDLGSWSLGGQTSRQFSVLDMPAHKTLKYRKTGQ
NTAAELRKKDLRSVLDEKERAAHMAKLQERGKGGDLGAREELRRLEAGEA
AATPLLLKDKEELRQATQRFDDRDDEANDDDDDAGGVGGTGIESDLDSSD
DSDDDDDDDDEDLLRLELEKIKQEREEARRKQEDEDKAEAARMKEDEINA
AALKGNPLLASGTGSAQIKRKWNDDVVFKNQSRGETEKKKKFVNDTIRNP
FHKAFLQRYMK*

mRNA from alignment at scaffold_10:628905..629690-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4450 ID=mRNA_4450|Name=jgi.p|Nanoce1779_2|639177|organism=Nannochloropsis oceanica|type=mRNA|length=786bp|location=Sequence derived from alignment at scaffold_10:628905..629690- (Nannochloropsis oceanica)
ATGACAACGGCAGCCAAATCAACATGGAACTCTAAGCAGGGGGGGGCCTC
TGACCTGGGCAGCTGGAGCCTCGGCGGGCAGACGTCCCGGCAATTTTCTG
TCCTTGACATGCCCGCGCACAAGACCCTCAAGTATCGGAAAACGGGCCAA
AACACGGCGGCGGAGTTGCGCAAAAAGGATTTGCGGAGCGTGCTGGACGA
GAAGGAGCGGGCGGCACACATGGCCAAGCTGCAGGAACGTGGCAAGGGAG
GGGATTTGGGCGCCCGCGAAGAGCTGCGGCGGTTGGAGGCGGGAGAGGCC
GCAGCCACGCCCTTGTTGCTCAAGGACAAAGAAGAACTTCGCCAAGCCAC
CCAGCGCTTTGACGATCGCGATGATGAGGCGAATGATGACGATGATGATG
CGGGCGGGGTGGGTGGGACCGGGATTGAGAGTGATTTGGATAGCAGCGAC
GACAGCGACGATGACGATGACGACGACGACGAAGACCTGTTACGTTTGGA
GTTGGAAAAAATCAAGCAGGAGCGGGAAGAGGCTCGTCGGAAGCAGGAGG
ATGAGGACAAGGCCGAGGCAGCCCGAATGAAGGAGGATGAAATCAATGCG
GCGGCCTTGAAGGGAAACCCGCTCCTAGCAAGTGGTACTGGTAGTGCACA
GATCAAGCGTAAATGGAACGACGACGTGGTCTTCAAGAACCAATCTCGGG
GGGAGACGGAGAAGAAGAAGAAGTTTGTAAACGATACGATCCGCAATCCG
TTCCACAAGGCTTTCTTGCAGCGGTACATGAAGTAA

Coding sequence (CDS) from alignment at scaffold_10:628905..629690-

>mRNA_4450 ID=mRNA_4450|Name=jgi.p|Nanoce1779_2|639177|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_10:628905..629690- (Nannochloropsis oceanica)
ATGACAACGGCAGCCAAATCAACATGGAACTCTAAGCAGGGGGGGGCCTC
TGACCTGGGCAGCTGGAGCCTCGGCGGGCAGACGTCCCGGCAATTTTCTG
TCCTTGACATGCCCGCGCACAAGACCCTCAAGTATCGGAAAACGGGCCAA
AACACGGCGGCGGAGTTGCGCAAAAAGGATTTGCGGAGCGTGCTGGACGA
GAAGGAGCGGGCGGCACACATGGCCAAGCTGCAGGAACGTGGCAAGGGAG
GGGATTTGGGCGCCCGCGAAGAGCTGCGGCGGTTGGAGGCGGGAGAGGCC
GCAGCCACGCCCTTGTTGCTCAAGGACAAAGAAGAACTTCGCCAAGCCAC
CCAGCGCTTTGACGATCGCGATGATGAGGCGAATGATGACGATGATGATG
CGGGCGGGGTGGGTGGGACCGGGATTGAGAGTGATTTGGATAGCAGCGAC
GACAGCGACGATGACGATGACGACGACGACGAAGACCTGTTACGTTTGGA
GTTGGAAAAAATCAAGCAGGAGCGGGAAGAGGCTCGTCGGAAGCAGGAGG
ATGAGGACAAGGCCGAGGCAGCCCGAATGAAGGAGGATGAAATCAATGCG
GCGGCCTTGAAGGGAAACCCGCTCCTAGCAAGTGGTACTGGTAGTGCACA
GATCAAGCGTAAATGGAACGACGACGTGGTCTTCAAGAACCAATCTCGGG
GGGAGACGGAGAAGAAGAAGAAGTTTGTAAACGATACGATCCGCAATCCG
TTCCACAAGGCTTTCTTGCAGCGGTACATGAAGTAA

Synonyms

Publications