jgi.p|Nanoce1779_2|589163, mRNA_4447 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589163
Unique NamemRNA_4447
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length954
Alignment locationscaffold_10:623403..624432 +

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Properties
Property NameValue
TranscriptId589249
TrackFilteredModels2
ProteinId589163
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:623403..624432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589163gene_4447Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589163mRNA_4447-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4447CDS_4447Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4447 ID=mRNA_4447|Name=jgi.p|Nanoce1779_2|589163|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATCCGTATTACATCGGTCACACTCGAATCGAAGCATGGCCTTCAAGCAGG
CCGTCGTCGTCCTTCTAAGTCTCGCCTTCCATTTCCCGGTCCTAACTTGG
GGCTTCTTTCTCCGCATGTCCCGAACACCGTTGGGAGTAGGCGTCGTTGG
CTGCGGGCGCATCGGACAGATACACGGCAATACCCTCGCTTTCCACACGC
CAGGCGCGCGGCTTGTGGCCATTACGGACCCCTTCGAGGAGATGGGTAAG
AAGTTAATAGGACAAACGGGTGGCATGCCCACCTACCACAAGGACTACTT
CGAGCTGCTTGACCGCGACGATGTGCATGCCGTGGTGGTGGCTTCACCCA
CGCCCTGCCACGTGGAGCAAATCATGTCGGCCGTCGAGCGTGGCAAACAC
GACTTCTGTGAGAAACCGATCTCGAACGATCTCTCTGCTATTGACGCCTG
CACTCAAGCTGCGGCTAAGGCGGGCACCAAGCTCATCCTCGGCTTCCAAC
GTCGCTTCGACATCAACTTTCAAAATGTCAAGAAGCAGATCACGCAAGGC
GCAATTGGCGAAATGCGGACTTTCCGCATCGTAAGTCGGGATCAGGCCCC
ACCCCCTGCTGAGTACCTCAAGACAAGCGGCGGCATCTTTTTGGACATGA
GCAGCCACGATTTTGATATGGCTCGTTTCTTGGTGGGGAGCGAGATTGAG
GAGATCTACGTGAAAGGAGCCTCGTGGGTGCCCGAGGCTAAGGCGGCAGG
GGACCTGGACACTCTGTGACACTGTGTAGAGATTTTTGTGGGTTTCCGAG
CCTACCCGCACTGGAATGACCGATGGAATGTCTACGAGTGGTGGGCTTTG
GTATCACCTGTCGTCACTCGACCGTGATGTGGTGGTCATTTTTTGGTGGT
GGGCTGGGGCCCGCTCGGTAGGGCTTCAAGTTCGCCCGCCAGTCATCAGT
AGTC
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protein sequence of jgi.p|Nanoce1779_2|589163

>mRNA_4447-protein ID=mRNA_4447-protein|Name=jgi.p|Nanoce1779_2|589163|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MAFKQAVVVLLSLAFHFPVLTWGFFLRMSRTPLGVGVVGCGRIGQIHGNT
LAFHTPGARLVAITDPFEEMGKKLIGQTGGMPTYHKDYFELLDRDDVHAV
VVASPTPCHVEQIMSAVERGKHDFCEKPISNDLSAIDACTQAAAKAGTKL
ILGFQRRFDINFQNVKKQITQGAIGEMRTFRIVSRDQAPPPAEYLKTSGG
IFLDMSSHDFDMARFLVGSEIEEIYVKGASWVPEAKAAGDLDTL*
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mRNA from alignment at scaffold_10:623403..624432+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4447 ID=mRNA_4447|Name=jgi.p|Nanoce1779_2|589163|organism=Nannochloropsis oceanica|type=mRNA|length=1030bp|location=Sequence derived from alignment at scaffold_10:623403..624432+ (Nannochloropsis oceanica)
ATCCGTATTACATCGGTCACACTCGAATCGAAGCATGGCCTTCAAGCAGG
CCGTCGTCGTCCTTCTAAGTCTCGCCTTCCATTTCCCGGTCCTAACTTGG
GGCTTCTTTCTCCGCATGTCCCGAACACCGTTGGGAGTAGGCGTCGTTGG
CTGCGGGCGCATCGGACAGATACACGGCAATACCCTCGCTTTCCACACGC
CAGGCGCGCGGCTTGTGGCCATTACGGACCCCTTCGAGGAGATGGGTAAG
AAGTTAATAGGACAAACGGGTGGCATGCCCACCTACCACAAGGACTACTT
CGAGCTGCTTGACCGCGACGATGTGCATGCCGTGGTGGTGGCTTCACCCA
CGCCCTGCCACGTGGAGCAAATCATGTCGGCCGTCGAGCGTGGCAAACAC
GACTTCTGTGAGAAACCGATCTCGAACGATCTCTCTGCTATTGACGCCTG
CACTCAAGCTGCGGCTAAGGCGGGCACCAAGCTCATCCTCGGCTTCCAAC
GTCGCTTCGACATCAACTTTCAAAATGTCAAGAAGCAGATCACGCAAGGC
GCAATTGGCGAAATGCGGACTTTCCGCATCGTAAGTCGGGATCAGGCCCC
ACCCCCTGCTGAGTACCTCAAGACAAGCGGCGGCATCTTTTTGGACATGA
GCAGCCACGATTTTGATATGGCTCGTTTCTTGGTGGGGAGCGAGATTGAG
GAGATCTACGTGAAAGGAGCCTCGTGGGTGCCCGAGGCTAAGGCGGCAGG
GGACCTGGACACTCTGTGACACTGTGTAGAGACTTAAAAGATGCGATAAA
TGTGGTGAAGTGAAGTCGTGCTTGAGTTGTTTTTTTCTATTTCATCCTTC
AGACTTACTTTTTGTGGGTTTCCGAGCCTACCCGCACTGGAATGACCGAT
GGAATGTCTACGAGTGGTGGGCTTTGGTATCACCTGTCGTCACTCGACCG
TGATGTGGTGGTCATTTTTTGGTGGTGGGCTGGGGCCCGCTCGGTAGGGC
TTCAAGTTCGCCCGCCAGTCATCAGTAGTC
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Coding sequence (CDS) from alignment at scaffold_10:623403..624432+

>mRNA_4447 ID=mRNA_4447|Name=jgi.p|Nanoce1779_2|589163|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_10:623403..624432+ (Nannochloropsis oceanica)
ATGGCCTTCAAGCAGGCCGTCGTCGTCCTTCTAAGTCTCGCCTTCCATTT
CCCGGTCCTAACTTGGGGCTTCTTTCTCCGCATGTCCCGAACACCGTTGG
GAGTAGGCGTCGTTGGCTGCGGGCGCATCGGACAGATACACGGCAATACC
CTCGCTTTCCACACGCCAGGCGCGCGGCTTGTGGCCATTACGGACCCCTT
CGAGGAGATGGGTAAGAAGTTAATAGGACAAACGGGTGGCATGCCCACCT
ACCACAAGGACTACTTCGAGCTGCTTGACCGCGACGATGTGCATGCCGTG
GTGGTGGCTTCACCCACGCCCTGCCACGTGGAGCAAATCATGTCGGCCGT
CGAGCGTGGCAAACACGACTTCTGTGAGAAACCGATCTCGAACGATCTCT
CTGCTATTGACGCCTGCACTCAAGCTGCGGCTAAGGCGGGCACCAAGCTC
ATCCTCGGCTTCCAACGTCGCTTCGACATCAACTTTCAAAATGTCAAGAA
GCAGATCACGCAAGGCGCAATTGGCGAAATGCGGACTTTCCGCATCGTAA
GTCGGGATCAGGCCCCACCCCCTGCTGAGTACCTCAAGACAAGCGGCGGC
ATCTTTTTGGACATGAGCAGCCACGATTTTGATATGGCTCGTTTCTTGGT
GGGGAGCGAGATTGAGGAGATCTACGTGAAAGGAGCCTCGTGGGTGCCCG
AGGCTAAGGCGGCAGGGGACCTGGACACTCTGTGA
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Synonyms
Publications