jgi.p|Nanoce1779_2|589147, mRNA_4446 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589147
Unique NamemRNA_4446
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1047
Alignment locationscaffold_10:620504..621550 +

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Properties
Property NameValue
TranscriptId589233
TrackFilteredModels2
ProteinId589147
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:620504..621550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589147gene_4446Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589147mRNA_4446-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4446CDS_4446Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4446 ID=mRNA_4446|Name=jgi.p|Nanoce1779_2|589147|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp
TGGACACACATCTATGCGATGGCGGGATCAAGAAGCAAGACTTGCGTGCG
GAAGACAATGACAGCGAAGGGAACGACAACGACGAGAACGAGCAGGAGGA
GGAGGAGGAGGAGGAGGACTTCGACGAGGACAGTGAAGCAGCACAGCGGT
TGCGTCTTGAGAATAGATGTAACAGCCGCGGAGAAGGGAAAATGAGTGAA
CGACGAAGCGGCGCAGACGAAGCGAATGGTCTCGAACCCCCCCTCCCCCT
CGCTCTCCCTCGGGTCCTACGCCTCCAATTTATGCTTGAGTGCGCAGCGG
GTGTCTGCCATTTACATGCCCATGGACTGGTGCACGGTGACATTAAATCT
CTCAATTTTCTCGTGACTGCCAAACTCTCCGTCAAATTAGGAGATGTCGG
AGAATGCAGGAGGGCAGGAGCGGTGCCAGTGGGCGGTGGACCTGTCCTTC
CCAGTACCATTAATTGGGCTCCTCCTGAGGTACTGGCGGGGAGAGCGACC
AGGTACCACCCCTCGATGGATGTATATTCCTTAGGATTGGTTTTGCATGA
GGTGATGACCATGGAAGTGCCTTTCCACCATGAGCCTTTCACTTCCTTGC
GATCACAGGATTTGGTCCAGCATATTGTGGAGGGGGGTCGGCCATCTTTT
GGGGAGGGTGACGTAGGGGGAAATGATCCCTGGTCTCTTTCTATACCGTT
CAGGCTTCAACAGGTACTCCGACAGTGTTGGCATGTGGATCCGAGACAGC
GACCATCGGCGGCGGAGGTGCACGCATTTTTGGTGAAATTGCTCGAGGAG
CAGGGTAAGAGTGAAACGGAGGGGGAAGCCAAAGATCATGTAGTGTAGTT
AAGGCTAGCTTGCAAGTGTACATATTTGGGAGAGGTACATATCAACATTA
TGTATTATGTATTATGTATTATTATTTATTATTATCAATGCTGAATAGTT
CTTTTGCTCTTTTGAGTTGCGTTCCTACATCTCTCTAGAACTATCGCATG
CAACCTGACGTCTTCGAGGACTTGCATACGAGGGGGAGCCTTCCAAC
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protein sequence of jgi.p|Nanoce1779_2|589147

>mRNA_4446-protein ID=mRNA_4446-protein|Name=jgi.p|Nanoce1779_2|589147|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MSERRSGADEANGLEPPLPLALPRVLRLQFMLECAAGVCHLHAHGLVHGD
IKSLNFLVTAKLSVKLGDVGECRRAGAVPVGGGPVLPSTINWAPPEVLAG
RATRYHPSMDVYSLGLVLHEVMTMEVPFHHEPFTSLRSQDLVQHIVEGGR
PSFGEGDVGGNDPWSLSIPFRLQQVLRQCWHVDPRQRPSAAEVHAFLVKL
LEEQGKSETEGEAKDHVV*
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mRNA from alignment at scaffold_10:620504..621550+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4446 ID=mRNA_4446|Name=jgi.p|Nanoce1779_2|589147|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp|location=Sequence derived from alignment at scaffold_10:620504..621550+ (Nannochloropsis oceanica)
TGGACACACATCTATGCGATGGCGGGATCAAGAAGCAAGACTTGCGTGCG
GAAGACAATGACAGCGAAGGGAACGACAACGACGAGAACGAGCAGGAGGA
GGAGGAGGAGGAGGAGGACTTCGACGAGGACAGTGAAGCAGCACAGCGGT
TGCGTCTTGAGAATAGATGTAACAGCCGCGGAGAAGGGAAAATGAGTGAA
CGACGAAGCGGCGCAGACGAAGCGAATGGTCTCGAACCCCCCCTCCCCCT
CGCTCTCCCTCGGGTCCTACGCCTCCAATTTATGCTTGAGTGCGCAGCGG
GTGTCTGCCATTTACATGCCCATGGACTGGTGCACGGTGACATTAAATCT
CTCAATTTTCTCGTGACTGCCAAACTCTCCGTCAAATTAGGAGATGTCGG
AGAATGCAGGAGGGCAGGAGCGGTGCCAGTGGGCGGTGGACCTGTCCTTC
CCAGTACCATTAATTGGGCTCCTCCTGAGGTACTGGCGGGGAGAGCGACC
AGGTACCACCCCTCGATGGATGTATATTCCTTAGGATTGGTTTTGCATGA
GGTGATGACCATGGAAGTGCCTTTCCACCATGAGCCTTTCACTTCCTTGC
GATCACAGGATTTGGTCCAGCATATTGTGGAGGGGGGTCGGCCATCTTTT
GGGGAGGGTGACGTAGGGGGAAATGATCCCTGGTCTCTTTCTATACCGTT
CAGGCTTCAACAGGTACTCCGACAGTGTTGGCATGTGGATCCGAGACAGC
GACCATCGGCGGCGGAGGTGCACGCATTTTTGGTGAAATTGCTCGAGGAG
CAGGGTAAGAGTGAAACGGAGGGGGAAGCCAAAGATCATGTAGTGTAGTT
AAGGCTAGCTTGCAAGTGTACATATTTGGGAGAGGTACATATCAACATTA
TGTATTATGTATTATGTATTATTATTTATTATTATCAATGCTGAATAGTT
CTTTTGCTCTTTTGAGTTGCGTTCCTACATCTCTCTAGAACTATCGCATG
CAACCTGACGTCTTCGAGGACTTGCATACGAGGGGGAGCCTTCCAAC
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Coding sequence (CDS) from alignment at scaffold_10:620504..621550+

>mRNA_4446 ID=mRNA_4446|Name=jgi.p|Nanoce1779_2|589147|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_10:620504..621550+ (Nannochloropsis oceanica)
ATGAGTGAACGACGAAGCGGCGCAGACGAAGCGAATGGTCTCGAACCCCC
CCTCCCCCTCGCTCTCCCTCGGGTCCTACGCCTCCAATTTATGCTTGAGT
GCGCAGCGGGTGTCTGCCATTTACATGCCCATGGACTGGTGCACGGTGAC
ATTAAATCTCTCAATTTTCTCGTGACTGCCAAACTCTCCGTCAAATTAGG
AGATGTCGGAGAATGCAGGAGGGCAGGAGCGGTGCCAGTGGGCGGTGGAC
CTGTCCTTCCCAGTACCATTAATTGGGCTCCTCCTGAGGTACTGGCGGGG
AGAGCGACCAGGTACCACCCCTCGATGGATGTATATTCCTTAGGATTGGT
TTTGCATGAGGTGATGACCATGGAAGTGCCTTTCCACCATGAGCCTTTCA
CTTCCTTGCGATCACAGGATTTGGTCCAGCATATTGTGGAGGGGGGTCGG
CCATCTTTTGGGGAGGGTGACGTAGGGGGAAATGATCCCTGGTCTCTTTC
TATACCGTTCAGGCTTCAACAGGTACTCCGACAGTGTTGGCATGTGGATC
CGAGACAGCGACCATCGGCGGCGGAGGTGCACGCATTTTTGGTGAAATTG
CTCGAGGAGCAGGGTAAGAGTGAAACGGAGGGGGAAGCCAAAGATCATGT
AGTGTAG
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Synonyms
Publications