jgi.p|Nanoce1779_2|589146, mRNA_4445 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589146
Unique Name	mRNA_4445
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1613
Alignment location	scaffold_10:618825..620437 +

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Properties


Property Name	Value
TranscriptId	589232
Track	FilteredModels2
ProteinId	589146

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:618825..620437 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589146	gene_4445	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589146	mRNA_4445-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4445	CDS_4445	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:618825..620437+
coding sequence from alignment at scaffold_10:618825..620437+

mRNA sequence

>mRNA_4445 ID=mRNA_4445|Name=jgi.p|Nanoce1779_2|589146|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp
ACAGACTGTCTTTCAACATAGCGCCCATGGCCGTGCCGCAAACCTGAAAG
CGCCAGGAGCAAGCAGCAGCACAGCACACAAGGGCATTCATTGTTCCACG
TGGGGTGACGCCCTCTCCTGCATACCCCCTAAATAAACCATGCGCCGGTT
CTTGCGCGACGTGGCGAGGGCCGCAAAGGCAACTGCTTCCCCATCGCCCC
TGCTGCACACGTCCGAATATACGCCAATGTGCGGAAACCAGCCCTCTCAG
ATCTCGGGCAGCATCTACGTGACTGTCGAAGCCTGCATCAAGACTGGCGC
TGTGATCATCGTGCTCCTCTATATGTACTACCGCAAACGCCTCGCTCGAT
CCTTTTCTTCTGCCTCCAGAAGCTTCGTTTTATCTTCCTCCTCGGCAGAG
GCCGCGGCGGCCACTTCATCCCTCATTTTCCCCTTCTACTACTCCCTTTT
TTTCGCCACGGCCTTTGTCGACGTTCTAACCGTTGCCCTCTCCCTAGCCT
TCGGCGGGCAACTCCCCCCCGCCATCGCGGCACTCTGCTGGGCCTTATCC
CGACTCATCACCGAAGGACTTACCATCTTCCTTCTTCATCATGGTGTGGG
CCTCGCGACGATTCAATACAGTTTCACCTACGCCGTCATGTGGGCCCTCA
TCTCCTTCCTTGCATGGTACTGTGTCCCTCTCCTCCGAGCTGTGGAAGAA
ACCAACACCGTCGGCGACATCATTGCATTTGTTTACCTATTCCCCCCCCT
TCTCGCTTACATGCTTCTGGCCTTTGCACCTATGAAACACCTTCCCCGCC
GCCCTGCCGTTCTGCCCATCGCTCTACTCATGTCCGCCGTGTTCGCAACC
CTCGTCCTTCGGGAAGCCCTCCTCGTCGCACATTGCTTCCTCCCGGGCCC
CTGCCTGCTGTGGACAACCTGGTCATTACTTCTCTGGGCCATTTACCCCT
TTGTCGTCTACCGTGCCCTGGTCATGGATTCCCAATGGTGGCAAGGCCTC
TATCACGATCCGCATGGATGGGCGGGGAATTTAAACACTCCTCTGCTGGA
CGTCTGGGGGGACGGCCTTCTAGAAGCTCCTGCCTCCGAGCTCGCAAGCT
TGATGTATCAACTTGAAACCACCCCAGAGGGCGCCTCTTCCTCCACTCCT
CCTCCCACCCCTCCCGTGCTAGCACTGACTCAGGAGCGGGTTCCCATTAT
CCCTTTCGGCCAAATTTTCCTCCGAACCGATCTTAAATATCGCTCAGGCA
GCAACAGTCGTGTCTATGTCGGAGAGTGGAATTCTAGGACAGTGGCAGTC
AAAATGCTTTTTGCCATGGAGCTCGACGCCGTCATCCTCCGAGAGTTTTT
CCAGGAGGCGCGGATGCTGTACTCACTAAGACAACACCCGAATGTATTGA
AGTGTCTTGGGGTCGCGATCATGCCTCCAGCGGCCTGTTTGGTCACGGAG
TTGTGCGAACATGGATCGATGTTCGATTTTTTGAAGAGGTTTAAGAGGGA
ACAGGTGCGGAAAGAAAGGGAACGACGGTGGCAGCAGCAGCAGCAGCAGC
AGCATGGTCAGGAAGAGGGGGAGGACGAGAGAGCGAAAAAGAAGGTGTGG
CAGCAGCCGGGGG

protein sequence of jgi.p|Nanoce1779_2|589146

>mRNA_4445-protein ID=mRNA_4445-protein|Name=jgi.p|Nanoce1779_2|589146|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MVLCPSPPSCGRNQHRRRHHCICLPIPPPSRLHASGLCTYETPSPPPCRS
AHRSTHVRRVRNPRPSGSPPRRTLLPPGPLPAVDNLVITSLGHLPLCRLP
CPGHGFPMVARPLSRSAWMGGEFKHSSAGRLGGRPSRSSCLRARKLDVST
*

mRNA from alignment at scaffold_10:618825..620437+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4445 ID=mRNA_4445|Name=jgi.p|Nanoce1779_2|589146|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp|location=Sequence derived from alignment at scaffold_10:618825..620437+ (Nannochloropsis oceanica)
ACAGACTGTCTTTCAACATAGCGCCCATGGCCGTGCCGCAAACCTGAAAG
CGCCAGGAGCAAGCAGCAGCACAGCACACAAGGGCATTCATTGTTCCACG
TGGGGTGACGCCCTCTCCTGCATACCCCCTAAATAAACCATGCGCCGGTT
CTTGCGCGACGTGGCGAGGGCCGCAAAGGCAACTGCTTCCCCATCGCCCC
TGCTGCACACGTCCGAATATACGCCAATGTGCGGAAACCAGCCCTCTCAG
ATCTCGGGCAGCATCTACGTGACTGTCGAAGCCTGCATCAAGACTGGCGC
TGTGATCATCGTGCTCCTCTATATGTACTACCGCAAACGCCTCGCTCGAT
CCTTTTCTTCTGCCTCCAGAAGCTTCGTTTTATCTTCCTCCTCGGCAGAG
GCCGCGGCGGCCACTTCATCCCTCATTTTCCCCTTCTACTACTCCCTTTT
TTTCGCCACGGCCTTTGTCGACGTTCTAACCGTTGCCCTCTCCCTAGCCT
TCGGCGGGCAACTCCCCCCCGCCATCGCGGCACTCTGCTGGGCCTTATCC
CGACTCATCACCGAAGGACTTACCATCTTCCTTCTTCATCATGGTGTGGG
CCTCGCGACGATTCAATACAGTTTCACCTACGCCGTCATGTGGGCCCTCA
TCTCCTTCCTTGCATGGTACTGTGTCCCTCTCCTCCGAGCTGTGGAAGAA
ACCAACACCGTCGGCGACATCATTGCATTTGTTTACCTATTCCCCCCCCT
TCTCGCTTACATGCTTCTGGCCTTTGCACCTATGAAACACCTTCCCCGCC
GCCCTGCCGTTCTGCCCATCGCTCTACTCATGTCCGCCGTGTTCGCAACC
CTCGTCCTTCGGGAAGCCCTCCTCGTCGCACATTGCTTCCTCCCGGGCCC
CTGCCTGCTGTGGACAACCTGGTCATTACTTCTCTGGGCCATTTACCCCT
TTGTCGTCTACCGTGCCCTGGTCATGGATTCCCAATGGTGGCAAGGCCTC
TATCACGATCCGCATGGATGGGCGGGGAATTTAAACACTCCTCTGCTGGA
CGTCTGGGGGGACGGCCTTCTAGAAGCTCCTGCCTCCGAGCTCGCAAGCT
TGATGTATCAACTTGAAACCACCCCAGAGGGCGCCTCTTCCTCCACTCCT
CCTCCCACCCCTCCCGTGCTAGCACTGACTCAGGAGCGGGTTCCCATTAT
CCCTTTCGGCCAAATTTTCCTCCGAACCGATCTTAAATATCGCTCAGGCA
GCAACAGTCGTGTCTATGTCGGAGAGTGGAATTCTAGGACAGTGGCAGTC
AAAATGCTTTTTGCCATGGAGCTCGACGCCGTCATCCTCCGAGAGTTTTT
CCAGGAGGCGCGGATGCTGTACTCACTAAGACAACACCCGAATGTATTGA
AGTGTCTTGGGGTCGCGATCATGCCTCCAGCGGCCTGTTTGGTCACGGAG
TTGTGCGAACATGGATCGATGTTCGATTTTTTGAAGAGGTTTAAGAGGGA
ACAGGTGCGGAAAGAAAGGGAACGACGGTGGCAGCAGCAGCAGCAGCAGC
AGCATGGTCAGGAAGAGGGGGAGGACGAGAGAGCGAAAAAGAAGGTGTGG
CAGCAGCCGGGGG

Coding sequence (CDS) from alignment at scaffold_10:618825..620437+

>mRNA_4445 ID=mRNA_4445|Name=jgi.p|Nanoce1779_2|589146|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_10:618825..620437+ (Nannochloropsis oceanica)
ATGGTACTGTGTCCCTCTCCTCCGAGCTGTGGAAGAAACCAACACCGTCG
GCGACATCATTGCATTTGTTTACCTATTCCCCCCCCTTCTCGCTTACATG
CTTCTGGCCTTTGCACCTATGAAACACCTTCCCCGCCGCCCTGCCGTTCT
GCCCATCGCTCTACTCATGTCCGCCGTGTTCGCAACCCTCGTCCTTCGGG
AAGCCCTCCTCGTCGCACATTGCTTCCTCCCGGGCCCCTGCCTGCTGTGG
ACAACCTGGTCATTACTTCTCTGGGCCATTTACCCCTTTGTCGTCTACCG
TGCCCTGGTCATGGATTCCCAATGGTGGCAAGGCCTCTATCACGATCCGC
ATGGATGGGCGGGGAATTTAAACACTCCTCTGCTGGACGTCTGGGGGGAC
GGCCTTCTAGAAGCTCCTGCCTCCGAGCTCGCAAGCTTGATGTATCAACT
TGA

Synonyms

Publications