jgi.p|Nanoce1779_2|589144, mRNA_4444 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589144
Unique NamemRNA_4444
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length952
Alignment locationscaffold_10:617591..618542 -

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Properties
Property NameValue
TranscriptId589230
TrackFilteredModels2
ProteinId589144
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:617591..618542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589144gene_4444Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589144mRNA_4444-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4444CDS_4444Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4444 ID=mRNA_4444|Name=jgi.p|Nanoce1779_2|589144|organism=Nannochloropsis oceanica|type=mRNA|length=952bp
AGCAGGGAGCCGACGTCGCGTGCAACGACATTCTCACCTCATTGTTCCAA
GGGCACCTGCCTCTACTCTGACTAACAGAACGACCATGCATCCGCGCGGT
TTCCTCCTCTTACTTTACACCTATTCTTCGGCCAGTGCTTTTTTCCTCGG
CGGCGGCGCTCCCACCTTGATCATATCCCGCAGCCGCAGGACGCCCTCCT
TGTCCTCCTCCCTCCACATGAGCCGAGACTGGTTCACAGATGCCGCTGGC
GAAGCCCTTATTCCAGACGACAAACTCAACTTTGTGCACGATTTTCTGGA
CAACAAGGGAAAGAACGTAGTGCGTGGCCCCGCGCAAGTGACAGCACCTG
ATGGACGCTTGCTCGACGTGCTGCCGGGGGAAGAGGTTGAGATTATCGGT
GGCATGGTCTACCGCACGTATCTCAACGGATTTCCGGCTGTAAACGAAGC
GCGTCTTCGTCAAGAAAGGCAAGTGGTATTGGAGATCAAGTGGGGTGATA
ACTGGGAGACACAGGGCTTCACCTTGGAAGTGATGGGTGTGACGGGGCCG
TCGTGTGAGATTTATACGAATCGGTTTTGCGAGGCAACGGGGTGTACTCC
CAAGGGCCCTATGGTTGTGAAACCTGCTTATTTTGAAGTGCCCTTGACAG
TTAATACTCAAAACGTAGAGGCGGTGGAAAAGCTGCGACAGGTCCAGCTT
GGGACAGCGTCAATTGAATTTTGAGGGAGAAAGAGGTTAGCCGAGCGATC
TCCTCTCCTCTTTTGTTGTTGTACCCATAGCCATATGGATAAAACCACGG
GCCGAAGAAGCCGCGAGAATAGAAGAGAGAAAAACTGCGGGGGCATCAGC
ACCAGTAGCTGCAGCAGCACCGTGAATCGAAGTGAAGTAGCGTATGAGGA
GGACTCTATAATAGAGGATGACTGAGGAATGAATAGCCATACTCGATGTA
CC
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protein sequence of jgi.p|Nanoce1779_2|589144

>mRNA_4444-protein ID=mRNA_4444-protein|Name=jgi.p|Nanoce1779_2|589144|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MHPRGFLLLLYTYSSASAFFLGGGAPTLIISRSRRTPSLSSSLHMSRDWF
TDAAGEALIPDDKLNFVHDFLDNKGKNVVRGPAQVTAPDGRLLDVLPGEE
VEIIGGMVYRTYLNGFPAVNEARLRQERQVVLEIKWGDNWETQGFTLEVM
GVTGPSCEIYTNRFCEATGCTPKGPMVVKPAYFEVPLTVNTQNVEAVEKL
RQVQLGTASIEF*
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mRNA from alignment at scaffold_10:617591..618542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4444 ID=mRNA_4444|Name=jgi.p|Nanoce1779_2|589144|organism=Nannochloropsis oceanica|type=mRNA|length=952bp|location=Sequence derived from alignment at scaffold_10:617591..618542- (Nannochloropsis oceanica)
AGCAGGGAGCCGACGTCGCGTGCAACGACATTCTCACCTCATTGTTCCAA
GGGCACCTGCCTCTACTCTGACTAACAGAACGACCATGCATCCGCGCGGT
TTCCTCCTCTTACTTTACACCTATTCTTCGGCCAGTGCTTTTTTCCTCGG
CGGCGGCGCTCCCACCTTGATCATATCCCGCAGCCGCAGGACGCCCTCCT
TGTCCTCCTCCCTCCACATGAGCCGAGACTGGTTCACAGATGCCGCTGGC
GAAGCCCTTATTCCAGACGACAAACTCAACTTTGTGCACGATTTTCTGGA
CAACAAGGGAAAGAACGTAGTGCGTGGCCCCGCGCAAGTGACAGCACCTG
ATGGACGCTTGCTCGACGTGCTGCCGGGGGAAGAGGTTGAGATTATCGGT
GGCATGGTCTACCGCACGTATCTCAACGGATTTCCGGCTGTAAACGAAGC
GCGTCTTCGTCAAGAAAGGCAAGTGGTATTGGAGATCAAGTGGGGTGATA
ACTGGGAGACACAGGGCTTCACCTTGGAAGTGATGGGTGTGACGGGGCCG
TCGTGTGAGATTTATACGAATCGGTTTTGCGAGGCAACGGGGTGTACTCC
CAAGGGCCCTATGGTTGTGAAACCTGCTTATTTTGAAGTGCCCTTGACAG
TTAATACTCAAAACGTAGAGGCGGTGGAAAAGCTGCGACAGGTCCAGCTT
GGGACAGCGTCAATTGAATTTTGAGGGAGAAAGAGGTTAGCCGAGCGATC
TCCTCTCCTCTTTTGTTGTTGTACCCATAGCCATATGGATAAAACCACGG
GCCGAAGAAGCCGCGAGAATAGAAGAGAGAAAAACTGCGGGGGCATCAGC
ACCAGTAGCTGCAGCAGCACCGTGAATCGAAGTGAAGTAGCGTATGAGGA
GGACTCTATAATAGAGGATGACTGAGGAATGAATAGCCATACTCGATGTA
CC
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Coding sequence (CDS) from alignment at scaffold_10:617591..618542-

>mRNA_4444 ID=mRNA_4444|Name=jgi.p|Nanoce1779_2|589144|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_10:617591..618542- (Nannochloropsis oceanica)
ATGCATCCGCGCGGTTTCCTCCTCTTACTTTACACCTATTCTTCGGCCAG
TGCTTTTTTCCTCGGCGGCGGCGCTCCCACCTTGATCATATCCCGCAGCC
GCAGGACGCCCTCCTTGTCCTCCTCCCTCCACATGAGCCGAGACTGGTTC
ACAGATGCCGCTGGCGAAGCCCTTATTCCAGACGACAAACTCAACTTTGT
GCACGATTTTCTGGACAACAAGGGAAAGAACGTAGTGCGTGGCCCCGCGC
AAGTGACAGCACCTGATGGACGCTTGCTCGACGTGCTGCCGGGGGAAGAG
GTTGAGATTATCGGTGGCATGGTCTACCGCACGTATCTCAACGGATTTCC
GGCTGTAAACGAAGCGCGTCTTCGTCAAGAAAGGCAAGTGGTATTGGAGA
TCAAGTGGGGTGATAACTGGGAGACACAGGGCTTCACCTTGGAAGTGATG
GGTGTGACGGGGCCGTCGTGTGAGATTTATACGAATCGGTTTTGCGAGGC
AACGGGGTGTACTCCCAAGGGCCCTATGGTTGTGAAACCTGCTTATTTTG
AAGTGCCCTTGACAGTTAATACTCAAAACGTAGAGGCGGTGGAAAAGCTG
CGACAGGTCCAGCTTGGGACAGCGTCAATTGAATTTTGA
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Synonyms
Publications