jgi.p|Nanoce1779_2|639168, mRNA_4441 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639168
Unique NamemRNA_4441
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length387
Alignment locationscaffold_10:611269..612192 +

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Properties
Property NameValue
TranscriptId639254
TrackFilteredModels2
ProteinId639168
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:611269..612192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639168gene_4441Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639168mRNA_4441-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4441CDS_4441Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4441 ID=mRNA_4441|Name=jgi.p|Nanoce1779_2|639168|organism=Nannochloropsis oceanica|type=mRNA|length=387bp
ATGAAGACCTTTTGCATCCTTCTGGCCCTCGTCGCCCTGTTCAACTTTTC
CAATGCTTTCATGCCCAAGGCGCCCGTGCACACTGCCCGCCCCGTCGTCG
CCCGCGGCCGCACCATGAAGATGATGGAGGAGAGCACCTACTGGGAAGGC
AAGGCCCCCCCGTCCGTCGTGCTGGGCCCCTTTCTTTCCAAGATCCCCTC
CGGTGTGCTTGGCCCTGCCTCCCTCGTCGCCCTCATTGTGGGCTCCTACT
GCACGCACGAGTCCAACATCTTCAACACCCTCACCGTCGACACCATCTAC
CCCGCATACGTGCTTGGATCTTTCCTGACGCCCATCTCCTGGGGCTTGCA
CGTTGCTGCCTGGATCCAGAAGATGAATAAGGCTTAA
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protein sequence of jgi.p|Nanoce1779_2|639168

>mRNA_4441-protein ID=mRNA_4441-protein|Name=jgi.p|Nanoce1779_2|639168|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MKTFCILLALVALFNFSNAFMPKAPVHTARPVVARGRTMKMMEESTYWEG
KAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTLTVDTIY
PAYVLGSFLTPISWGLHVAAWIQKMNKA*
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mRNA from alignment at scaffold_10:611269..612192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4441 ID=mRNA_4441|Name=jgi.p|Nanoce1779_2|639168|organism=Nannochloropsis oceanica|type=mRNA|length=924bp|location=Sequence derived from alignment at scaffold_10:611269..612192+ (Nannochloropsis oceanica)
ATGAAGACCTTTTGCATCCTTCTGGCCCTCGTCGCCCTGTTCAACTTTTC
CAATGCTTTCATGCCCAAGGCGCCCGTGCACACTGCCCGCCCCGTCGTCG
CCCGCGGTAAGCAAGCATTTGAAGGACATGCAGATTGAGTGTCTAGTTTA
GACATGGAGACGGCTCCCATGCCAAGACAATGCCTTCCTGAACACTCACT
CAACTCTCCCCCCGACAGGCCGCACCATGAAGATGATGGAGGAGAGCACC
TACTGGGAAGGCAAGGCCCCCCCGTCCGTCGTGCTGGGCCCCTTTCTTTC
CAAGATCCCCTCCGGTGTGCTTGGCCCTGCCTCCCTCGTCGCCCTCATTG
TGGTACGTTTTTTTAAATATCAGATTTGCGAAAAAAAGGAGGGGGGAGGG
AGAGAGCGCGCAAGAAATAGAGGTAGATGCATGAACGGAAAAGAGAAGAA
AACCGGAAGGACGCTAAGCTGCCTCTACATTTGAATGCTTTCACGATTTA
CAGGGCTCCTACTGCACGCACGAGTCCAACATCTTCAACACCCTCACCGT
CGACACGTGAGTCCTTCTTTTCCTTTGAATTTCTTGTTGTCTTTTTCCTG
TGATTTTCCCGACTTGTACATGCATGCGATGGCCCGGCCCTCCGGAAGTA
GCGCCATGGGAGATGAACGAGGAGGGTCGTATAAGTCCTAGTCATTTAAA
ATCTTAAAATGCCCTTCCTCCCTTCCTTCCTGCCTGCTTTCTTCTTCTTC
GAGGTCTTTCTATGTCAGATAAACAAGGCCCGCCTCTATGCACCGCCGTT
CACCCCCCCCCCCCCCTTCCCCCACCACAGCATCTACCCCGCATACGTGC
TTGGATCTTTCCTGACGCCCATCTCCTGGGGCTTGCACGTTGCTGCCTGG
ATCCAGAAGATGAATAAGGCTTAA
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Coding sequence (CDS) from alignment at scaffold_10:611269..612192+

>mRNA_4441 ID=mRNA_4441|Name=jgi.p|Nanoce1779_2|639168|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_10:611269..612192+ (Nannochloropsis oceanica)
ATGAAGACCTTTTGCATCCTTCTGGCCCTCGTCGCCCTGTTCAACTTTTC
CAATGCTTTCATGCCCAAGGCGCCCGTGCACACTGCCCGCCCCGTCGTCG
CCCGCGGCCGCACCATGAAGATGATGGAGGAGAGCACCTACTGGGAAGGC
AAGGCCCCCCCGTCCGTCGTGCTGGGCCCCTTTCTTTCCAAGATCCCCTC
CGGTGTGCTTGGCCCTGCCTCCCTCGTCGCCCTCATTGTGGGCTCCTACT
GCACGCACGAGTCCAACATCTTCAACACCCTCACCGTCGACACCATCTAC
CCCGCATACGTGCTTGGATCTTTCCTGACGCCCATCTCCTGGGGCTTGCA
CGTTGCTGCCTGGATCCAGAAGATGAATAAGGCTTAAATGAAGACCTTTT
GCATCCTTCTGGCCCTCGTCGCCCTGTTCAACTTTTCCAATGCTTTCATG
CCCAAGGCGCCCGTGCACACTGCCCGCCCCGTCGTCGCCCGCGGCCGCAC
CATGAAGATGATGGAGGAGAGCACCTACTGGGAAGGCAAGGCCCCCCCGT
CCGTCGTGCTGGGCCCCTTTCTTTCCAAGATCCCCTCCGGTGTGCTTGGC
CCTGCCTCCCTCGTCGCCCTCATTGTGGGCTCCTACTGCACGCACGAGTC
CAACATCTTCAACACCCTCACCGTCGACACCATCTACCCCGCATACGTGC
TTGGATCTTTCCTGACGCCCATCTCCTGGGGCTTGCACGTTGCTGCCTGG
ATCCAGAAGATGAATAAGGCTTAAATGAAGACCTTTTGCATCCTTCTGGC
CCTCGTCGCCCTGTTCAACTTTTCCAATGCTTTCATGCCCAAGGCGCCCG
TGCACACTGCCCGCCCCGTCGTCGCCCGCGGCCGCACCATGAAGATGATG
GAGGAGAGCACCTACTGGGAAGGCAAGGCCCCCCCGTCCGTCGTGCTGGG
CCCCTTTCTTTCCAAGATCCCCTCCGGTGTGCTTGGCCCTGCCTCCCTCG
TCGCCCTCATTGTGGGCTCCTACTGCACGCACGAGTCCAACATCTTCAAC
ACCCTCACCGTCGACACCATCTACCCCGCATACGTGCTTGGATCTTTCCT
GACGCCCATCTCCTGGGGCTTGCACGTTGCTGCCTGGATCCAGAAGATGA
ATAAGGCTTAAATGAAGACCTTTTGCATCCTTCTGGCCCTCGTCGCCCTG
TTCAACTTTTCCAATGCTTTCATGCCCAAGGCGCCCGTGCACACTGCCCG
CCCCGTCGTCGCCCGCGGCCGCACCATGAAGATGATGGAGGAGAGCACCT
ACTGGGAAGGCAAGGCCCCCCCGTCCGTCGTGCTGGGCCCCTTTCTTTCC
AAGATCCCCTCCGGTGTGCTTGGCCCTGCCTCCCTCGTCGCCCTCATTGT
GGGCTCCTACTGCACGCACGAGTCCAACATCTTCAACACCCTCACCGTCG
ACACCATCTACCCCGCATACGTGCTTGGATCTTTCCTGACGCCCATCTCC
TGGGGCTTGCACGTTGCTGCCTGGATCCAGAAGATGAATAAGGCTTAA
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Synonyms
Publications