jgi.p|Nanoce1779_2|589124, mRNA_4440 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589124
Unique Name	mRNA_4440
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1777
Alignment location	scaffold_10:608560..610588 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589210
Track	FilteredModels2
ProteinId	589124

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:608560..610588 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589124	gene_4440	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589124	mRNA_4440-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4440	CDS_4440	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:608560..610588+
coding sequence from alignment at scaffold_10:608560..610588+

mRNA sequence

>mRNA_4440 ID=mRNA_4440|Name=jgi.p|Nanoce1779_2|589124|organism=Nannochloropsis oceanica|type=mRNA|length=1777bp
ACAGGTCTCTCGCACAACGACCGTTTGGCCCTCGTCCGCTTTGAGACGTG
CGTGTTCTGGTTGCTGCCCCGACTGACTCTCAGCAGCTATCACACAACGA
ACTGTGCGCTCCAGCACACCAACATAATGCCCAGCACTAGCACCAGCATC
AGCAGTGCTGTTCATGCCAGCGGGGACGGCGCTTCGTGTCCCTGCCCTTC
TTCCTCGTCAGGCCTTCCCTTTCCCGCCCTGACGCTGACGCGGAGAGGGA
ATGAACGTCGCCGCAGGCAGATGGCTATGGGCTATGGGCTTCTCGTTCTC
TGTTGTTGCTCACTTGTCAGCCTAGCAACCGCAGTAGGAGGGGGTTGGAC
TAGCTCAGTCACAAAAAGCAGTGCAGCCGGTTTTCTTGGTCCATTCCTGC
CACCCTCTACCGCCGCCGCCCTGGGGCCCGCCAGCAGCCGCAGCAGTGCA
AGCAGACGGATATCGATGCCACGAGTACACGTGAGCTACACAGGCACGAG
TGCTGGCTCCAGTCCTACGCCCACTACGCCTGTGGTTGTCCAATTCAACC
ATTCCTCTGTTGCCATTACTCAAGATTCCTCATCCGCCCTATCACTCCCT
CCTTCTCGAGCTGCCGCCCGCACCCGTGCAATCGGCAAGCCAGCCAACCT
CCCAGGGCTTAGCAAAGACGATCTTATCCTCCTGCGCGCCGGTCAGCGGG
TACAACATCAAATCCGTAACGGATGCATGGGAAGTGGTTATGTCGTCGTG
GATGTCCTGGCGGACAGTAAAAAGGTGTGGGAGACTCTGTTGAATTTTGA
GAGATACCCAGAGATGATCCCGACCATTCGGAAGACCCGCGTGACGTCGC
GATGGAGGACAATTACCAAGGGTCTCTTCACCCTGTCCAAGTTCCGGTTT
CGCTTGTCAGTGGTACACAAGCATGTGCCGGAGGAGAACCGCTTGGACTT
TTACTTGGACCCGGACTCGACGCAATACCGTAGCATTCTTGAGATGGCGG
AGGGCTTCTGGTTTATTGATGACAGGCCCGCGGATCGCACCGAGGGGTGG
ACGCGTGTGTACATGTCGGCGACGGTCAAGGTGAACAACTTGGTGCCCAT
GTGGTTGGTCGAGTACGCGGCAGAGCGAGCGTTAAAGAGGGCTACATCGT
GGCTGAAGCCCTACGTGGAGCAAAACCGGGGAGGGGGCGAGAGAGGGGAG
AAGTGAACGATAGTCGACAGGGTGGAAAAGGGAGTGGATTATACTGTACA
GAAATAGAAATGGTGGGAAGACCGCAGACATTTCATATGGGAAAGGTGTG
AAAGCTGCGTTTTGACAAGAGGAAGAATCAATGGTGGGTTGGACGAGCGA
GAAGTCCAGAGGAACGTGTGACATGTGACAATAATGAGCGACACAGGTTG
AAGGAAGAGGGAGCCTTTATTTTAGAGAGTAGCCGACCGCAGTGAGTGCA
ACGTTGTGAGAGAAAGATAGAAGAATGGTTAGGACAAAGGGAAAGAAATT
TGCCCCGACAACCCTGCAGGGCAGGCCGGGGAGAGTGCGCAAGTACTGGC
GTGTGTTCGGGTGATATGCAGTGGTCAGTGGTAATCATTAGCAGTACCAT
ACACAGTGTGATTGAGGAGAGTCAGGGAACTAGAGGTAAGAGGCAGTTAT
TGTCTCGTTCCCGTTCTTTCGGCGTAAACCTGCTTCATACTGATCAAATC
TGAAAACGAACCCAGGACTTGATTCAAACAAGAAAACAAGAAAATGGGGA
AAAGAAATAATAGCGGTATTTGGTAAA

protein sequence of jgi.p|Nanoce1779_2|589124

>mRNA_4440-protein ID=mRNA_4440-protein|Name=jgi.p|Nanoce1779_2|589124|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MPSTSTSISSAVHASGDGASCPCPSSSSGLPFPALTLTRRGNERRRRQMA
MGYGLLVLCCCSLVSLATAVGGGWTSSVTKSSAAGFLGPFLPPSTAAALG
PASSRSSASRRISMPRVHVSYTGTSAGSSPTPTTPVVVQFNHSSVAITQD
SSSALSLPPSRAAARTRAIGKPANLPGLSKDDLILLRAGQRVQHQIRNGC
MGSGYVVVDVLADSKKVWETLLNFERYPEMIPTIRKTRVTSRWRTITKGL
FTLSKFRFRLSVVHKHVPEENRLDFYLDPDSTQYRSILEMAEGFWFIDDR
PADRTEGWTRVYMSATVKVNNLVPMWLVEYAAERALKRATSWLKPYVEQN
RGGGERGEK*

mRNA from alignment at scaffold_10:608560..610588+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4440 ID=mRNA_4440|Name=jgi.p|Nanoce1779_2|589124|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp|location=Sequence derived from alignment at scaffold_10:608560..610588+ (Nannochloropsis oceanica)
ACAGGTCTCTCGCACAACGACCGTTTGGCCCTCGTCCGCTTTGAGACGTG
CGTGTTCTGGTTGCTGCCCCGACTGACTCTCAGCAGCTATCACACAACGA
ACTGTGCGCTCCAGCACACCAACATAATGCCCAGCACTAGCACCAGCATC
AGCAGTGCTGTTCATGCCAGCGGGGACGGCGCTTCGTGTCCCTGCCCTTC
TTCCTCGTCAGGCCTTCCCTTTCCCGCCCTGACGCTGACGCGGAGAGGGA
ATGAACGTCGCCGCAGGCAGATGGCTATGGGCTATGGGCTTCTCGTTCTC
TGTTGTTGCTCACTTGTCAGCCTAGCAACCGCAGTAGGAGGGGGTTGGAC
TAGCTCAGTCACAAAAAGCAGTGCAGCCGGTTTTCTTGGTCCATTCCTGC
CACCCTCTACCGCCGCCGCCCTGGGGCCCGCCAGCAGCCGCAGCAGTGCA
AGCAGACGGATATCGATGCCACGAGTACACGTGAGCTACACAGGCACGAG
TGCTGGCTCCAGTCCTACGCCCACTACGCCTGTGGTTGTCCAATTCAACC
ATTCCTCTGTTGCCATTACTGTGAGTCAGACGAAAAGTGAAAAACGACTC
GTCCTCATTCTCCCCCTCATTCATCCACGTACCAATCATCTCACATTCCT
TCCTCCTTTTAAATACAGCAAGATTCCTCATCCGCCCTATCACTCCCTCC
TTCTCGAGCTGCCGCCCGCACCCGTGCAATCGGCAAGCCAGCCAACCTCC
CAGGGCTTAGCAAAGACGATCTTATCCTCCTGCGCGCCGGTCAGCGGGTA
CAACATCAAATCCGTAACGGATGCATGGGAAGTGGTTATGTCGTCGTGGA
TGTCCTGGCGGACAGTAAAAAGGTGTGGGAGACTCTGTTGAATTTTGAGA
GATACCCAGAGATGATCCCGACCATTCGGAAGACCCGCGTGACGTCGCGA
TGGAGGACAATTACCAAGGGTCTCTTCACCCTGTCCAAGTTCCGGTTTCG
CTTGTCAGTGGTACACAAGCATGTGCCGGAGGAGGTATGTTCTGTCGAAA
AAAGGAGACCGGATAGTGTCGGTCGTATCCTAGGCTTGCTCTGCCGGATC
ACATATGGATGTTAAGATCACTCACGTCGCCCTTCCTCCCTCCCTTCCCC
CTTCCGTCCCTCACAACCCCCCCCCCTTCCCTCCACAGAACCGCTTGGAC
TTTTACTTGGACCCGGACTCGACGCAATACCGTAGCATTCTTGAGATGGC
GGAGGGCTTCTGGTTTATTGATGACAGGCCCGCGGATCGCACCGAGGGGT
GGACGCGTGTGTACATGTCGGCGACGGTCAAGGTGAACAACTTGGTGCCC
ATGTGGTTGGTCGAGTACGCGGCAGAGCGAGCGTTAAAGAGGGCTACATC
GTGGCTGAAGCCCTACGTGGAGCAAAACCGGGGAGGGGGCGAGAGAGGGG
AGAAGTGAACGATAGTCGACAGGGTGGAAAAGGGAGTGGATTATACTGTA
CAGAAATAGAAATGGTGGGAAGACCGCAGACATTTCATATGGGAAAGGTG
TGAAAGCTGCGTTTTGACAAGAGGAAGAATCAATGGTGGGTTGGACGAGC
GAGAAGTCCAGAGGAACGTGTGACATGTGACAATAATGAGCGACACAGGT
TGAAGGAAGAGGGAGCCTTTATTTTAGAGAGTAGCCGACCGCAGTGAGTG
CAACGTTGTGAGAGAAAGATAGAAGAATGGTTAGGACAAAGGGAAAGAAA
TTTGCCCCGACAACCCTGCAGGGCAGGCCGGGGAGAGTGCGCAAGTACTG
GCGTGTGTTCGGGTGATATGCAGTGGTCAGTGGTAATCATTAGCAGTACC
ATACACAGTGTGATTGAGGAGAGTCAGGGAACTAGAGGTAAGAGGCAGTT
ATTGTCTCGTTCCCGTTCTTTCGGCGTAAACCTGCTTCATACTGATCAAA
TCTGAAAACGAACCCAGGACTTGATTCAAACAAGAAAACAAGAAAATGGG
GAAAAGAAATAATAGCGGTATTTGGTAAA

Coding sequence (CDS) from alignment at scaffold_10:608560..610588+

>mRNA_4440 ID=mRNA_4440|Name=jgi.p|Nanoce1779_2|589124|organism=Nannochloropsis oceanica|type=CDS|length=3240bp|location=Sequence derived from alignment at scaffold_10:608560..610588+ (Nannochloropsis oceanica)
ATGCCCAGCACTAGCACCAGCATCAGCAGTGCTGTTCATGCCAGCGGGGA
CGGCGCTTCGTGTCCCTGCCCTTCTTCCTCGTCAGGCCTTCCCTTTCCCG
CCCTGACGCTGACGCGGAGAGGGAATGAACGTCGCCGCAGGCAGATGGCT
ATGGGCTATGGGCTTCTCGTTCTCTGTTGTTGCTCACTTGTCAGCCTAGC
AACCGCAGTAGGAGGGGGTTGGACTAGCTCAGTCACAAAAAGCAGTGCAG
CCGGTTTTCTTGGTCCATTCCTGCCACCCTCTACCGCCGCCGCCCTGGGG
CCCGCCAGCAGCCGCAGCAGTGCAAGCAGACGGATATCGATGCCACGAGT
ACACGTGAGCTACACAGGCACGAGTGCTGGCTCCAGTCCTACGCCCACTA
CGCCTGTGGTTGTCCAATTCAACCATTCCTCTGTTGCCATTACTCAAGAT
TCCTCATCCGCCCTATCACTCCCTCCTTCTCGAGCTGCCGCCCGCACCCG
TGCAATCGGCAAGCCAGCCAACCTCCCAGGGCTTAGCAAAGACGATCTTA
TCCTCCTGCGCGCCGGTCAGCGGGTACAACATCAAATCCGTAACGGATGC
ATGGGAAGTGGTTATGTCGTCGTGGATGTCCTGGCGGACAGTAAAAAGGT
GTGGGAGACTCTGTTGAATTTTGAGAGATACCCAGAGATGATCCCGACCA
TTCGGAAGACCCGCGTGACGTCGCGATGGAGGACAATTACCAAGGGTCTC
TTCACCCTGTCCAAGTTCCGGTTTCGCTTGTCAGTGGTACACAAGCATGT
GCCGGAGGAGAACCGCTTGGACTTTTACTTGGACCCGGACTCGACGCAAT
ACCGTAGCATTCTTGAGATGGCGGAGGGCTTCTGGTTTATTGATGACAGG
CCCGCGGATCGCACCGAGGGGTGGACGCGTGTGTACATGTCGGCGACGGT
CAAGGTGAACAACTTGGTGCCCATGTGGTTGGTCGAGTACGCGGCAGAGC
GAGCGTTAAAGAGGGCTACATCGTGGCTGAAGCCCTACGTGGAGCAAAAC
CGGGGAGGGGGCGAGAGAGGGGAGAAGTGAATGCCCAGCACTAGCACCAG
CATCAGCAGTGCTGTTCATGCCAGCGGGGACGGCGCTTCGTGTCCCTGCC
CTTCTTCCTCGTCAGGCCTTCCCTTTCCCGCCCTGACGCTGACGCGGAGA
GGGAATGAACGTCGCCGCAGGCAGATGGCTATGGGCTATGGGCTTCTCGT
TCTCTGTTGTTGCTCACTTGTCAGCCTAGCAACCGCAGTAGGAGGGGGTT
GGACTAGCTCAGTCACAAAAAGCAGTGCAGCCGGTTTTCTTGGTCCATTC
CTGCCACCCTCTACCGCCGCCGCCCTGGGGCCCGCCAGCAGCCGCAGCAG
TGCAAGCAGACGGATATCGATGCCACGAGTACACGTGAGCTACACAGGCA
CGAGTGCTGGCTCCAGTCCTACGCCCACTACGCCTGTGGTTGTCCAATTC
AACCATTCCTCTGTTGCCATTACTCAAGATTCCTCATCCGCCCTATCACT
CCCTCCTTCTCGAGCTGCCGCCCGCACCCGTGCAATCGGCAAGCCAGCCA
ACCTCCCAGGGCTTAGCAAAGACGATCTTATCCTCCTGCGCGCCGGTCAG
CGGGTACAACATCAAATCCGTAACGGATGCATGGGAAGTGGTTATGTCGT
CGTGGATGTCCTGGCGGACAGTAAAAAGGTGTGGGAGACTCTGTTGAATT
TTGAGAGATACCCAGAGATGATCCCGACCATTCGGAAGACCCGCGTGACG
TCGCGATGGAGGACAATTACCAAGGGTCTCTTCACCCTGTCCAAGTTCCG
GTTTCGCTTGTCAGTGGTACACAAGCATGTGCCGGAGGAGAACCGCTTGG
ACTTTTACTTGGACCCGGACTCGACGCAATACCGTAGCATTCTTGAGATG
GCGGAGGGCTTCTGGTTTATTGATGACAGGCCCGCGGATCGCACCGAGGG
GTGGACGCGTGTGTACATGTCGGCGACGGTCAAGGTGAACAACTTGGTGC
CCATGTGGTTGGTCGAGTACGCGGCAGAGCGAGCGTTAAAGAGGGCTACA
TCGTGGCTGAAGCCCTACGTGGAGCAAAACCGGGGAGGGGGCGAGAGAGG
GGAGAAGTGAATGCCCAGCACTAGCACCAGCATCAGCAGTGCTGTTCATG
CCAGCGGGGACGGCGCTTCGTGTCCCTGCCCTTCTTCCTCGTCAGGCCTT
CCCTTTCCCGCCCTGACGCTGACGCGGAGAGGGAATGAACGTCGCCGCAG
GCAGATGGCTATGGGCTATGGGCTTCTCGTTCTCTGTTGTTGCTCACTTG
TCAGCCTAGCAACCGCAGTAGGAGGGGGTTGGACTAGCTCAGTCACAAAA
AGCAGTGCAGCCGGTTTTCTTGGTCCATTCCTGCCACCCTCTACCGCCGC
CGCCCTGGGGCCCGCCAGCAGCCGCAGCAGTGCAAGCAGACGGATATCGA
TGCCACGAGTACACGTGAGCTACACAGGCACGAGTGCTGGCTCCAGTCCT
ACGCCCACTACGCCTGTGGTTGTCCAATTCAACCATTCCTCTGTTGCCAT
TACTCAAGATTCCTCATCCGCCCTATCACTCCCTCCTTCTCGAGCTGCCG
CCCGCACCCGTGCAATCGGCAAGCCAGCCAACCTCCCAGGGCTTAGCAAA
GACGATCTTATCCTCCTGCGCGCCGGTCAGCGGGTACAACATCAAATCCG
TAACGGATGCATGGGAAGTGGTTATGTCGTCGTGGATGTCCTGGCGGACA
GTAAAAAGGTGTGGGAGACTCTGTTGAATTTTGAGAGATACCCAGAGATG
ATCCCGACCATTCGGAAGACCCGCGTGACGTCGCGATGGAGGACAATTAC
CAAGGGTCTCTTCACCCTGTCCAAGTTCCGGTTTCGCTTGTCAGTGGTAC
ACAAGCATGTGCCGGAGGAGAACCGCTTGGACTTTTACTTGGACCCGGAC
TCGACGCAATACCGTAGCATTCTTGAGATGGCGGAGGGCTTCTGGTTTAT
TGATGACAGGCCCGCGGATCGCACCGAGGGGTGGACGCGTGTGTACATGT
CGGCGACGGTCAAGGTGAACAACTTGGTGCCCATGTGGTTGGTCGAGTAC
GCGGCAGAGCGAGCGTTAAAGAGGGCTACATCGTGGCTGAAGCCCTACGT
GGAGCAAAACCGGGGAGGGGGCGAGAGAGGGGAGAAGTGA

Synonyms

Publications