jgi.p|Nanoce1779_2|523452, mRNA_444 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523452
Unique NamemRNA_444
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length477
Alignment locationscaffold_3:1096647..1097123 -

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Properties
Property NameValue
TranscriptId523538
TrackFilteredModels2
ProteinId523452
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1096647..1097123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523452gene_444Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_444CDS_444Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523452mRNA_444-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_444 ID=mRNA_444|Name=jgi.p|Nanoce1779_2|523452|organism=Nannochloropsis oceanica|type=mRNA|length=477bp
ATGATCGATTTAAACCCTGAGAGGGTGCGCGAGATCTATTTGGGGTACCT
AGAGCTGTTGCAGCGATTAGCCTTGTGGGAAGCGGCGAATGAGCTGGTGA
CGCGTGGGAATGATAAATATATTCAGCAGCTGTATGCGAGTAACACCACA
ATGTATGCCGCTTGTGCAAATTGCCGTAGTTCTTTAGGGCCTGTCACTGC
AGCAGCAAGCGTCTCGGTGCCTCCCTCTTCTTCGTCTTCGCCGTGGTGTA
GGAATTGCCGATCGCCGGTCTCACGGTGTGCGTTGTGCCTGCAATCTGTG
CGAGGAGTGTATGTCTGGTGTCCTGGTTGTGGGCATGGAGGGCACGTGAA
GCATCTACAGGAGTGGTTTGAGACGAATCAAGAATGTCCGACGGGCTGTG
GGCACAAGTGTCATCTGTCCGCGGGAGAGGAGGGGAAGGGGAGACAAGAG
AGAGTGCGATCGAGAACAATGTCATAA
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protein sequence of jgi.p|Nanoce1779_2|523452

>mRNA_444-protein ID=mRNA_444-protein|Name=jgi.p|Nanoce1779_2|523452|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MIDLNPERVREIYLGYLELLQRLALWEAANELVTRGNDKYIQQLYASNTT
MYAACANCRSSLGPVTAAASVSVPPSSSSSPWCRNCRSPVSRCALCLQSV
RGVYVWCPGCGHGGHVKHLQEWFETNQECPTGCGHKCHLSAGEEGKGRQE
RVRSRTMS*
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mRNA from alignment at scaffold_3:1096647..1097123-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_444 ID=mRNA_444|Name=jgi.p|Nanoce1779_2|523452|organism=Nannochloropsis oceanica|type=mRNA|length=477bp|location=Sequence derived from alignment at scaffold_3:1096647..1097123- (Nannochloropsis oceanica)
ATGATCGATTTAAACCCTGAGAGGGTGCGCGAGATCTATTTGGGGTACCT
AGAGCTGTTGCAGCGATTAGCCTTGTGGGAAGCGGCGAATGAGCTGGTGA
CGCGTGGGAATGATAAATATATTCAGCAGCTGTATGCGAGTAACACCACA
ATGTATGCCGCTTGTGCAAATTGCCGTAGTTCTTTAGGGCCTGTCACTGC
AGCAGCAAGCGTCTCGGTGCCTCCCTCTTCTTCGTCTTCGCCGTGGTGTA
GGAATTGCCGATCGCCGGTCTCACGGTGTGCGTTGTGCCTGCAATCTGTG
CGAGGAGTGTATGTCTGGTGTCCTGGTTGTGGGCATGGAGGGCACGTGAA
GCATCTACAGGAGTGGTTTGAGACGAATCAAGAATGTCCGACGGGCTGTG
GGCACAAGTGTCATCTGTCCGCGGGAGAGGAGGGGAAGGGGAGACAAGAG
AGAGTGCGATCGAGAACAATGTCATAA
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Coding sequence (CDS) from alignment at scaffold_3:1096647..1097123-

>mRNA_444 ID=mRNA_444|Name=jgi.p|Nanoce1779_2|523452|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_3:1096647..1097123- (Nannochloropsis oceanica)
ATGATCGATTTAAACCCTGAGAGGGTGCGCGAGATCTATTTGGGGTACCT
AGAGCTGTTGCAGCGATTAGCCTTGTGGGAAGCGGCGAATGAGCTGGTGA
CGCGTGGGAATGATAAATATATTCAGCAGCTGTATGCGAGTAACACCACA
ATGTATGCCGCTTGTGCAAATTGCCGTAGTTCTTTAGGGCCTGTCACTGC
AGCAGCAAGCGTCTCGGTGCCTCCCTCTTCTTCGTCTTCGCCGTGGTGTA
GGAATTGCCGATCGCCGGTCTCACGGTGTGCGTTGTGCCTGCAATCTGTG
CGAGGAGTGTATGTCTGGTGTCCTGGTTGTGGGCATGGAGGGCACGTGAA
GCATCTACAGGAGTGGTTTGAGACGAATCAAGAATGTCCGACGGGCTGTG
GGCACAAGTGTCATCTGTCCGCGGGAGAGGAGGGGAAGGGGAGACAAGAG
AGAGTGCGATCGAGAACAATGTCATAA
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Synonyms
Publications