jgi.p|Nanoce1779_2|670800, mRNA_4439 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670800
Unique NamemRNA_4439
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1534
Alignment locationscaffold_10:606512..608045 +

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Properties
Property NameValue
TranscriptId670886
TrackFilteredModels2
ProteinId670800
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:606512..608045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670800gene_4439Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670800mRNA_4439-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4439CDS_4439Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4439 ID=mRNA_4439|Name=jgi.p|Nanoce1779_2|670800|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp
GCCGTCACTATATGAAGGGGAGGCGAGCCACCGCCGCGTCCTCCATGTCG
CCGATAAGCTTACATACCCGCCGCATTAAAACTTCCATCACAACCCTTGA
AGACGCGTCTTGTGACACGTCCTCTGTCTTCCCTTTCCCGAAGGATCTGA
GCCCTATGGTCCAAAAGCCCATCACGTCACATCTCCAGCACCACTGACAT
GCTCTTCATACACCCTTTTTTCTTTTCTAGACTGACAGCAAGGCGTCAGG
GTTAGGCGCCATGATGTCGACACAGGCAGAAATTGCATCCTCATCGCCAC
CATCTCATTGCACACAAGAGCAAAGCACCCGGGTCCTATGGATTGGAAGC
CGAGCCGCCGGCACCCTGATGATGCAGATCCAGTGCTGCGAGTCCTTTAA
GGGTGAACTTTTAAACAGTGCGGCTGGTGACGCACATGTAGATCGCACCG
GCCTTCTACTTTGGCCTGGCTCCTTTTTAATGTGTGCATATCTTCTGGCA
GCGCGCGCATCACTGAGGAAGGCAGGAACTCTCCGACATGTGGTAGAGCT
TGGTGCAGGGGCGACGGGTTTAGCAGGCTCACTACTGGCGCATTTTTCTT
ATGAGCGGCCCTCCGGTTCCAGCAGCGGAATATCGCGACCGCGCGTCACT
CTCACGGATGGTGATCCAGAAAGCGTGGCACTTCTCTCGTATAACGCCAA
GCATCATTTTAGAGGAGGGAGGGAAATGAGACTTGACGGCAACAACACGA
CTATGTCCATGGCACCTTACGCTGACATCGTGGTGCAGCGGCTGCGGTGG
GGCAACCAGAATGAAATTAAAGCCCTTGGCTCAGGAATTGATCGTACAGC
CTCATTTGTGCTTGGCAGCGACATTCTCTATCCCTCCATCCCACCAGCCG
TGATATCTCAACTGTTACATTCCGTGCGAACTTTGCTAACTTCTGGAGAT
GAGTTATCAAATATGCAAGACACTGCTCAAGAGAAAGATGCTGTCAAACA
CATGGTCAAATTGAAGGGGCGATTTGTTCTCAGCTTCCTAGATCGAGACA
ACAAGGCCACGCTTCGCCATCTCCTCCTCGCGTTGCGGGAGGAACGGTTT
CAAATAGAGGAAGTGGTGACCGGGAGCGACCTCTTTGCAGATGAGAAAGA
AGGGTTTATGGTGATTGAGGAGGAAGAAGAGGAGGAGGGGGAGATTAATT
GTGGTGATGATGAGGAGGATGAGGGGGAGGAAGAGGGGAGAAAGGAGGGG
GAAGGAGGGGAGGCAGGTAGAGGAGGTTTCCGGGGACGGCACCGTCGGAG
AGTCCAAATGATGGGAGGTGGCAGCGTCTTTGTGTTATTTCCTTTGCCTC
TCGCTGATATTGAGGATGAAGCTATGTCTATTTCTGCTTTAAAAGCGTCT
GAAGCACGTTGGTTTCGGGACATATGGAAGGTCGCCCCACCAGAAGTGGA
AGTGGAGGAATGGCAAGCCCCGCTCATGAGTGATGACGAGGAAGAGGAAA
ATGACGTGACATGAGACTAAAAAAGTTATAAGTG
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protein sequence of jgi.p|Nanoce1779_2|670800

>mRNA_4439-protein ID=mRNA_4439-protein|Name=jgi.p|Nanoce1779_2|670800|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MMSTQAEIASSSPPSHCTQEQSTRVLWIGSRAAGTLMMQIQCCESFKGEL
LNSAAGDAHVDRTGLLLWPGSFLMCAYLLAARASLRKAGTLRHVVELGAG
ATGLAGSLLAHFSYERPSGSSSGISRPRVTLTDGDPESVALLSYNAKHHF
RGGREMRLDGNNTTMSMAPYADIVVQRLRWGNQNEIKALGSGIDRTASFV
LGSDILYPSIPPAVISQLLHSVRTLLTSGDELSNMQDTAQEKDAVKHMVK
LKGRFVLSFLDRDNKATLRHLLLALREERFQIEEVVTGSDLFADEKEGFM
VIEEEEEEEGEINCGDDEEDEGEEEGRKEGEGGEAGRGGFRGRHRRRVQM
MGGGSVFVLFPLPLADIEDEAMSISALKASEARWFRDIWKVAPPEVEVEE
WQAPLMSDDEEEENDVT*
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mRNA from alignment at scaffold_10:606512..608045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4439 ID=mRNA_4439|Name=jgi.p|Nanoce1779_2|670800|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at scaffold_10:606512..608045+ (Nannochloropsis oceanica)
GCCGTCACTATATGAAGGGGAGGCGAGCCACCGCCGCGTCCTCCATGTCG
CCGATAAGCTTACATACCCGCCGCATTAAAACTTCCATCACAACCCTTGA
AGACGCGTCTTGTGACACGTCCTCTGTCTTCCCTTTCCCGAAGGATCTGA
GCCCTATGGTCCAAAAGCCCATCACGTCACATCTCCAGCACCACTGACAT
GCTCTTCATACACCCTTTTTTCTTTTCTAGACTGACAGCAAGGCGTCAGG
GTTAGGCGCCATGATGTCGACACAGGCAGAAATTGCATCCTCATCGCCAC
CATCTCATTGCACACAAGAGCAAAGCACCCGGGTCCTATGGATTGGAAGC
CGAGCCGCCGGCACCCTGATGATGCAGATCCAGTGCTGCGAGTCCTTTAA
GGGTGAACTTTTAAACAGTGCGGCTGGTGACGCACATGTAGATCGCACCG
GCCTTCTACTTTGGCCTGGCTCCTTTTTAATGTGTGCATATCTTCTGGCA
GCGCGCGCATCACTGAGGAAGGCAGGAACTCTCCGACATGTGGTAGAGCT
TGGTGCAGGGGCGACGGGTTTAGCAGGCTCACTACTGGCGCATTTTTCTT
ATGAGCGGCCCTCCGGTTCCAGCAGCGGAATATCGCGACCGCGCGTCACT
CTCACGGATGGTGATCCAGAAAGCGTGGCACTTCTCTCGTATAACGCCAA
GCATCATTTTAGAGGAGGGAGGGAAATGAGACTTGACGGCAACAACACGA
CTATGTCCATGGCACCTTACGCTGACATCGTGGTGCAGCGGCTGCGGTGG
GGCAACCAGAATGAAATTAAAGCCCTTGGCTCAGGAATTGATCGTACAGC
CTCATTTGTGCTTGGCAGCGACATTCTCTATCCCTCCATCCCACCAGCCG
TGATATCTCAACTGTTACATTCCGTGCGAACTTTGCTAACTTCTGGAGAT
GAGTTATCAAATATGCAAGACACTGCTCAAGAGAAAGATGCTGTCAAACA
CATGGTCAAATTGAAGGGGCGATTTGTTCTCAGCTTCCTAGATCGAGACA
ACAAGGCCACGCTTCGCCATCTCCTCCTCGCGTTGCGGGAGGAACGGTTT
CAAATAGAGGAAGTGGTGACCGGGAGCGACCTCTTTGCAGATGAGAAAGA
AGGGTTTATGGTGATTGAGGAGGAAGAAGAGGAGGAGGGGGAGATTAATT
GTGGTGATGATGAGGAGGATGAGGGGGAGGAAGAGGGGAGAAAGGAGGGG
GAAGGAGGGGAGGCAGGTAGAGGAGGTTTCCGGGGACGGCACCGTCGGAG
AGTCCAAATGATGGGAGGTGGCAGCGTCTTTGTGTTATTTCCTTTGCCTC
TCGCTGATATTGAGGATGAAGCTATGTCTATTTCTGCTTTAAAAGCGTCT
GAAGCACGTTGGTTTCGGGACATATGGAAGGTCGCCCCACCAGAAGTGGA
AGTGGAGGAATGGCAAGCCCCGCTCATGAGTGATGACGAGGAAGAGGAAA
ATGACGTGACATGAGACTAAAAAAGTTATAAGTG
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Coding sequence (CDS) from alignment at scaffold_10:606512..608045+

>mRNA_4439 ID=mRNA_4439|Name=jgi.p|Nanoce1779_2|670800|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_10:606512..608045+ (Nannochloropsis oceanica)
ATGATGTCGACACAGGCAGAAATTGCATCCTCATCGCCACCATCTCATTG
CACACAAGAGCAAAGCACCCGGGTCCTATGGATTGGAAGCCGAGCCGCCG
GCACCCTGATGATGCAGATCCAGTGCTGCGAGTCCTTTAAGGGTGAACTT
TTAAACAGTGCGGCTGGTGACGCACATGTAGATCGCACCGGCCTTCTACT
TTGGCCTGGCTCCTTTTTAATGTGTGCATATCTTCTGGCAGCGCGCGCAT
CACTGAGGAAGGCAGGAACTCTCCGACATGTGGTAGAGCTTGGTGCAGGG
GCGACGGGTTTAGCAGGCTCACTACTGGCGCATTTTTCTTATGAGCGGCC
CTCCGGTTCCAGCAGCGGAATATCGCGACCGCGCGTCACTCTCACGGATG
GTGATCCAGAAAGCGTGGCACTTCTCTCGTATAACGCCAAGCATCATTTT
AGAGGAGGGAGGGAAATGAGACTTGACGGCAACAACACGACTATGTCCAT
GGCACCTTACGCTGACATCGTGGTGCAGCGGCTGCGGTGGGGCAACCAGA
ATGAAATTAAAGCCCTTGGCTCAGGAATTGATCGTACAGCCTCATTTGTG
CTTGGCAGCGACATTCTCTATCCCTCCATCCCACCAGCCGTGATATCTCA
ACTGTTACATTCCGTGCGAACTTTGCTAACTTCTGGAGATGAGTTATCAA
ATATGCAAGACACTGCTCAAGAGAAAGATGCTGTCAAACACATGGTCAAA
TTGAAGGGGCGATTTGTTCTCAGCTTCCTAGATCGAGACAACAAGGCCAC
GCTTCGCCATCTCCTCCTCGCGTTGCGGGAGGAACGGTTTCAAATAGAGG
AAGTGGTGACCGGGAGCGACCTCTTTGCAGATGAGAAAGAAGGGTTTATG
GTGATTGAGGAGGAAGAAGAGGAGGAGGGGGAGATTAATTGTGGTGATGA
TGAGGAGGATGAGGGGGAGGAAGAGGGGAGAAAGGAGGGGGAAGGAGGGG
AGGCAGGTAGAGGAGGTTTCCGGGGACGGCACCGTCGGAGAGTCCAAATG
ATGGGAGGTGGCAGCGTCTTTGTGTTATTTCCTTTGCCTCTCGCTGATAT
TGAGGATGAAGCTATGTCTATTTCTGCTTTAAAAGCGTCTGAAGCACGTT
GGTTTCGGGACATATGGAAGGTCGCCCCACCAGAAGTGGAAGTGGAGGAA
TGGCAAGCCCCGCTCATGAGTGATGACGAGGAAGAGGAAAATGACGTGAC
ATGA
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Synonyms
Publications