jgi.p|Nanoce1779_2|589099, mRNA_4435 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589099
Unique NamemRNA_4435
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length4619
Alignment locationscaffold_10:587441..592169 +

Link to JBrowse

Properties
Property NameValue
TranscriptId589185
TrackFilteredModels2
ProteinId589099
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:587441..592169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589099gene_4435Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589099mRNA_4435-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4435CDS_4435Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4435 ID=mRNA_4435|Name=jgi.p|Nanoce1779_2|589099|organism=Nannochloropsis oceanica|type=mRNA|length=4619bp
ACAGCCACATCCTCTCAAACCTGACAACTCTACGTGCGGGCTTGATTTCC
GCGCATTGGTTTAGACCGTTACGTCACCCCCCTCGCGTATCGTTTGTGCG
CATCGGTATACCCAGCATTTGCCTCCACACCTTGCCGTCAAAAATTCACC
GTACCCGCGCATTCCTCAGATTGCTACCAATGTGGCAACGGCGACCGTCC
GTCTCGGGCAAATATGCGGAGGAGGCGGGCCACTATTCTTTTCCCCCACC
CATTGACCATGCTCCAGTCGTCACGGTCGTTGATACCACCACGAGCAGCA
CGAACCGCCGAATCATGCCTAGATCTCCAGATCGTTCCGTGTCGGTAGTG
GGCATCCTGCTTGCCTTCCCGTGCCTTGTATTCGCCGTTGTCTTTTACAG
TCATCACAAAAATACCAGCAACAGCAATAGCATCCAGCCGCAACGTGCCC
TCGACACGCTGATAGCTTTTCCCAATCTCTTCTTTTGGAATTTAAAGGGC
ACCATCAAAGTCGGGGTTGAGGAGGAAGCGGCCATAGTGGGCATTTCTCC
TGGACGGGTGGGCGAGTGGTTTGATGCCTTGAACCCACTGACGGATGCCT
TGGACATGACGGCAGATGTGGAAGGATTCAATGCCGCGTGGGAAGGCTTT
TGGCTCCGAAATGGGCGGACGTGCCTGGCAGACAGCACCAAACGGCTTAA
GGAAGCTGTAGAGTCAGCCTGCGACGTTGTGTTGCTCTTACCGGGACATA
TCTATCATTTAAAAAAGATGATAAACGTGTGGAGACCAATCACGCTGATA
GGCAATCCGGCGGAGAGGCCGATTATCAACGCCGCAAAAGCCGAGCGGGC
ATTTTGGGTGCATTCGAAGGCGAGCATGGACATACGACACATAATGTTTT
ATGAAGGCGAAGGGGACGTGATTCGAAACGAGATCCGAACTCGGTTTGGT
GGGGTTGTGTATTTGTCAAGTGGTGCGAACCTTTTCGCCTTTGATTGTTT
ATTTACGATCCAGCCAACGCGTGAGGCGATCTTCAACGACAGACCAGAGT
TTATTTTTGGTGGGGACCTCCTTATGGTAGGCGGCGTCATGAACATCCTT
GCGTGCTCATTTTTTGCGATCGTGCCCGGTTTTGTTAACTCCATCTCGAC
GGAGATAGGCGGCTCGGTCTTGATCCTGGGGGGGAAGGCGACATTTACTT
TGGTAAACTTCATGACAACGCAAATCTTTGCTTTCAATGCAGGAAGTGGG
ATGCACCTCGCCCTCTTAGGTGGGGCGATGTCGATGCAAGCCTGCACGCA
TACGGCCAACTTGGTCTTTGCTGTACAAGGGATTGTAGGGCGTAATATTT
TTGTAGGGGGTGGAATCGGCGTGTTTACGGGGTGTGTCATTACAGATTCA
ATTTGTTTTTTGGCATTCTACGGCGCAGGTTTTAGCATTTTCATTGGAGC
AGGAGGTGGGATTTTTGCTGGCTGCGAGATCATGTTAAACAGTGCCATTG
GCCATAAGGCCGGTGTTGGGATAGCTGTGGCTGTGGGAGCAGGCACAGGC
TTGTTCTACGGCACGGTATTTTCGAAAAATTTGGGGATTACACTGTTCAA
CACACTTGGCGTGTTCATATTTGTTGGCACGGGTCGCCTGGCTCTTGTGG
GGTGTCCCTTCGCGCACCAAAATGCCATAGCGGCCTGGCAGCTTTTGGGA
GGAGCCATCTACCTCGGAACAGGTCAAGCCGTGGTGATTGGTTGTGTTTT
CACAAGGTCGTTGGGCCTTGATTCGTTCACAGGGCTGGGCGGAGATATTT
TTGTTGGTGCTGGACAGCTGGTATTGGTCCACTCTGTGTTCACGAGCAAC
ACGGGCATAACTGCCTTCCTCGGACAGGGCTCGGACTTGTACTTGGCAGC
GGGAAGTGCGTATATAAAGCATGTGAATGCCTCGATAAATGCCGGGATAC
ACCTTGTGAGTGAGGACCTGGCGGGGTTCTATGTCGCGGGGAGGGAGTGC
GAAGTCAAAACGTTGGAGTCAGATGCGATCACAAAATTCAAGGAGAGAGG
ATATGCACTGTGTTACAAGGGGCTTGACGGTAACGAGAAGGAGGAGATCG
AGGGGGAGGGAGTTGCCCTGGTGGTGGTCCAGAACTTGCAGGGCCGTCAG
CGTTTGGGGGGATGGCGGGGATGGACTCTGCCGGATACCAGCCCGGCGCT
CCTATATTTGGGTGGGAACATATCGTCGTGCCAGATATGTGGTTTGGACA
ACGTGGAAGTGCAAGGGCCTGCGACGGGGGCATGTTATGACGCAGAGGCG
ACAGAACCGGCGGTCTGTCCAGCAGATCAATCTCCTCGTAAGACAGCAGC
ATTAGCGGGCGAGCCACCTGTAGTAATAGCGCCAGTTGCCAACACCATTA
TCGACAGCAGCAGCAGCAGCAACTCCACACGTGATGTCAAGAACAAACTC
TTTGGATTGAACGCCAGGGTCCGTCGACTCATTGCAGGCAGGAGCGAGAA
CGATCGCGTAAGACAAGCCACAGAGGCCACAGAAGCAGCAGCCGCAGCGG
CAGCAGATGATGACCACGAGCCAGATGCCTTTCTACCTGATACATACGTG
ATTACTGCTGACTTGGTTCTCAACTGCTCTTCTTTGTTCTCCACCACGAA
CGAAAGTGTTGTTGTCGCCACTTGTGGATGTGGTACCACGGCAAGGGAGC
TGCAAGACCTGTTGGAGGAGAGTTGGCTTAAGGATCTGGGAGCAGAGGAC
GATACTACCGTGGTCATAACGCCTTTCAAGTCCTCTGACAGTTTGCTTGA
GACCTTGGGAATTCTTTCTATCAATGGAAGAAGTAACAGTAGCGGTAGTA
GCAGTAATCCCTCCGAACCCTCCACGGCGTGTACCAAACAAGAGATCTAT
GCGACTTACCTGCATACGACTGACAAGGTCACGTTCGAGAAGCTCAAACA
CTCCCTCTTGGCCACCGACAGCAGCAGCAGCACTAGCGGCAGAAGTAATA
TCATCACTTTGCTCTCAAGCCGCCTATCTCTTCTCTTGGCGGCCCTCTAC
CCGCAGATTTGCCACGTTAATCTTACCCTACAAGACAGCCTCTTTGTGCC
CCCCCCCGTAAAAAATCCTACCTCTTCAATCGGTACGGCCGCAAGCAGTG
ACAGCAGCGGCAACAACCGACCATCAGGCATCTCGGGCGGCATCACTTTA
CCGCGCGTGTGGGTGAATATCACCACGCCTGTAATTTCGGTAGGGAACAC
GTACCAAGTGGCCATCTCTGACTTTGATGACGGGGATCGTGTGGGTTTAC
AGCTGGTGGCTTCTTTTTCGAAAGATAAGAAGGACAAGAAGGCCACCCCA
TCTCTCTTCTTTCAATCTACCCCTCGGCCTCTGTACACATTTCGTCCATT
CGATGCGCTGGCAGGAAACCAGACATGGGGATGGCAGACTTCTGCTCTGA
CGTTTAGGGGTATGGGTAGCGGGCCATTTTTCCTGAAAGCATTTGATATT
TTGGAGCCGAAGCGGTTTGTGCTGAGTCAAGCCTTTGAATTGGAAGGGGT
GACTGCCACAGCTGGTACTGTGAGAGGGCTCAATGCTGGGACAAGGAATG
CAGGAACAAGCTCTGCGACATTAAAGACGAGGGCCGAGCACATTGTCCGG
CGGCTTTCCGGCCAATTTTCCGGAAGCGAGGAAGAGGAAGAGCAGCAAGA
TATCCCCAAGCTCGAGGACAACGACGACAGCAATCTTAACCTTATCTCCA
TAATGTCCACCCTGCTTGTCTCTCCCAATTCCGAGGAGGCATTTTCGATA
ACGAGGAACCTCTGGAAGGCTCTCCTTGCCCTCCCCTCCTCTCAAAAGGC
ACTCAAAAACCCCGCCCTTGCTCGGCAACTCTTAGAGCGAGTGCCAGCCC
TTCAAACCGCGCCTGCTATTCTTGCACTGGATGCGAATGGCGAGGCCGGC
TGGAAAGACTCGGTCCAGATTCAAGCTGCTATGGGAAAAGCGATAGCTGA
TTTCATGGATATGTCCTTGTCTGCCCTGCAACAGCAGCGACGGCAGCAGC
AAAAGCAGAAAGCGGGTGCCTTGTTTCGTCAAAATGACGAGGGGGTAGAT
ACAGCGAACCAATGGCCGACTAAAATCTTTGAAAGCTTAACGCCGGAAGA
GGAGGCATTGGCGAAGCGTATAGCACAGGAACGGGATATAGCATCGATGA
ATGTGTTGATGGATTCGCAGGCCGCGAGACGATTTGGGGGAATGACAATG
GCGAGGCTCCAGGATGCGGGGGTAGGGGAGGATATCAAAGAGATGCTTGG
GTCGACCGACATATTTAGGGACTTAATTGATGACCCAGAACTGTGGAAGG
CACTATGAGTGGGAGAGGCGAACGTTGTACTCTAGGTAGGTTTTCTTCTG
GTACATGAAGGAAAAGGTGAGGTAGGGAAGAGGAGTGAGGGTAGAATATG
AATCCCGACAGAGCGTGTTTTAAAGGTGTTTATAAATGAGCATATCATAT
CTGCATGTATTTAATGCGAATATACAAAGAAATGTTAGCGCGATGCTTCA
CTATGAGAGAGTCACAGGAGAGAGAATGGCCCTCCTCCCTGTTGTCGGAG
AGAACAAAAGCCATGCAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|589099

>mRNA_4435-protein ID=mRNA_4435-protein|Name=jgi.p|Nanoce1779_2|589099|organism=Nannochloropsis oceanica|type=polypeptide|length=1393bp
MWQRRPSVSGKYAEEAGHYSFPPPIDHAPVVTVVDTTTSSTNRRIMPRSP
DRSVSVVGILLAFPCLVFAVVFYSHHKNTSNSNSIQPQRALDTLIAFPNL
FFWNLKGTIKVGVEEEAAIVGISPGRVGEWFDALNPLTDALDMTADVEGF
NAAWEGFWLRNGRTCLADSTKRLKEAVESACDVVLLLPGHIYHLKKMINV
WRPITLIGNPAERPIINAAKAERAFWVHSKASMDIRHIMFYEGEGDVIRN
EIRTRFGGVVYLSSGANLFAFDCLFTIQPTREAIFNDRPEFIFGGDLLMV
GGVMNILACSFFAIVPGFVNSISTEIGGSVLILGGKATFTLVNFMTTQIF
AFNAGSGMHLALLGGAMSMQACTHTANLVFAVQGIVGRNIFVGGGIGVFT
GCVITDSICFLAFYGAGFSIFIGAGGGIFAGCEIMLNSAIGHKAGVGIAV
AVGAGTGLFYGTVFSKNLGITLFNTLGVFIFVGTGRLALVGCPFAHQNAI
AAWQLLGGAIYLGTGQAVVIGCVFTRSLGLDSFTGLGGDIFVGAGQLVLV
HSVFTSNTGITAFLGQGSDLYLAAGSAYIKHVNASINAGIHLVSEDLAGF
YVAGRECEVKTLESDAITKFKERGYALCYKGLDGNEKEEIEGEGVALVVV
QNLQGRQRLGGWRGWTLPDTSPALLYLGGNISSCQICGLDNVEVQGPATG
ACYDAEATEPAVCPADQSPRKTAALAGEPPVVIAPVANTIIDSSSSSNST
RDVKNKLFGLNARVRRLIAGRSENDRVRQATEATEAAAAAAADDDHEPDA
FLPDTYVITADLVLNCSSLFSTTNESVVVATCGCGTTARELQDLLEESWL
KDLGAEDDTTVVITPFKSSDSLLETLGILSINGRSNSSGSSSNPSEPSTA
CTKQEIYATYLHTTDKVTFEKLKHSLLATDSSSSTSGRSNIITLLSSRLS
LLLAALYPQICHVNLTLQDSLFVPPPVKNPTSSIGTAASSDSSGNNRPSG
ISGGITLPRVWVNITTPVISVGNTYQVAISDFDDGDRVGLQLVASFSKDK
KDKKATPSLFFQSTPRPLYTFRPFDALAGNQTWGWQTSALTFRGMGSGPF
FLKAFDILEPKRFVLSQAFELEGVTATAGTVRGLNAGTRNAGTSSATLKT
RAEHIVRRLSGQFSGSEEEEEQQDIPKLEDNDDSNLNLISIMSTLLVSPN
SEEAFSITRNLWKALLALPSSQKALKNPALARQLLERVPALQTAPAILAL
DANGEAGWKDSVQIQAAMGKAIADFMDMSLSALQQQRRQQQKQKAGALFR
QNDEGVDTANQWPTKIFESLTPEEEALAKRIAQERDIASMNVLMDSQAAR
RFGGMTMARLQDAGVGEDIKEMLGSTDIFRDLIDDPELWKAL*
back to top

mRNA from alignment at scaffold_10:587441..592169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4435 ID=mRNA_4435|Name=jgi.p|Nanoce1779_2|589099|organism=Nannochloropsis oceanica|type=mRNA|length=4729bp|location=Sequence derived from alignment at scaffold_10:587441..592169+ (Nannochloropsis oceanica)
ACAGCCACATCCTCTCAAACCTGACAACTCTACGTGCGGGCTTGATTTCC GCGCATTGGTTTAGACCGTTACGTCACCCCCCTCGCGTATCGTTTGTGCG CATCGGTATACCCAGCATTTGCCTCCACACCTTGCCGTCAAAAATTCACC GTACCCGCGCATTCCTCAGATTGCTACCAATGTGGCAACGGCGACCGTCC GTCTCGGGCAAATATGCGGAGGAGGCGGGCCACTATTCTTTTCCCCCACC CATTGACCATGCTCCAGTCGTCACGGTCGTTGATACCACCACGAGCAGCA CGAACCGCCGAATCATGCCTAGATCTCCAGATCGTTCCGTGTCGGTAGTG GGCATCCTGCTTGCCTTCCCGTGCCTTGTATTCGCCGTTGTCTTTTACAG TCATCACAAAAATACCAGCAACAGCAATAGCATCCAGCCGCAACGTGCCC TCGACACGCTGATAGCTTTTCCCAATCTCTTCTTTTGGAATTTAAAGGGC ACCATCAAAGTCGGGGTTGAGGAGGAAGCGGCCATAGTGGGCATTTCTCC TGGACGGGTGGGCGAGTGGTTTGATGCCTTGAACCCACTGACGGATGCCT TGGACATGACGGCAGATGTGGAAGGATTCAATGCCGCGTGGGAAGGCTTT TGGCTCCGAAATGGGCGGACGTGCCTGGCAGACAGCACCAAACGGCTTAA GGAAGCTGTAGAGTCAGCCTGCGACGTTGTGTTGCTCTTACCGGGACATA TCTATCATTTAAAAAAGATGATAAACGTGTGGAGACCAATCACGCTGATA GGCAATCCGGCGGAGAGGCCGATTATCAACGCCGCAAAAGCCGAGCGGGC ATTTTGGGTGCATTCGAAGGCGAGCATGGACATACGACACATAATGTTTT ATGAAGGCGAAGGGGACGTGATTCGAAACGAGATCCGAACTCGGTTTGGT GGGGTTGTGTATTTGTCAAGTGGTGCGAACCTTTTCGCCTTTGATTGTTT ATTTACGATCCAGCCAACGCGTGAGGCGATCTTCAACGACAGACCAGAGT TTATTTTTGGTGGGGACCTCCTTATGGTAGGCGGCGTCATGAACATCCTT GCGTGCTCATTTTTTGCGATCGTGCCCGGTTTTGTTAACTCCATCTCGAC GGAGATAGGCGGCTCGGTCTTGATCCTGGGGGGGAAGGCGACATTTACTT TGGTAAGGAAAGAGAGAAGAGGAATGGAAAGAAAGGAAGGAGAAGAAATA GAAGAAGCACTAGTTACTGATCCACCCCCTTACCGCTAAACTCTCTCCCT TTTACTTCCCAGGTAAACTTCATGACAACGCAAATCTTTGCTTTCAATGC AGGAAGTGGGATGCACCTCGCCCTCTTAGGTGGGGCGATGTCGATGCAAG CCTGCACGCATACGGCCAACTTGGTCTTTGCTGTACAAGGGATTGTAGGG CGTAATATTTTTGTAGGGGGTGGAATCGGCGTGTTTACGGGGTGTGTCAT TACAGATTCAATTTGTTTTTTGGCATTCTACGGCGCAGGTTTTAGCATTT TCATTGGAGCAGGAGGTGGGATTTTTGCTGGCTGCGAGATCATGTTAAAC AGTGCCATTGGCCATAAGGCCGGTGTTGGGATAGCTGTGGCTGTGGGAGC AGGCACAGGCTTGTTCTACGGCACGGTATTTTCGAAAAATTTGGGGATTA CACTGTTCAACACACTTGGCGTGTTCATATTTGTTGGCACGGGTCGCCTG GCTCTTGTGGGGTGTCCCTTCGCGCACCAAAATGCCATAGCGGCCTGGCA GCTTTTGGGAGGAGCCATCTACCTCGGAACAGGTCAAGCCGTGGTGATTG GTTGTGTTTTCACAAGGTCGTTGGGCCTTGATTCGTTCACAGGGCTGGGC GGAGATATTTTTGTTGGTGCTGGACAGCTGGTATTGGTCCACTCTGTGTT CACGAGCAACACGGGCATAACTGCCTTCCTCGGACAGGGCTCGGACTTGT ACTTGGCAGCGGGAAGTGCGTATATAAAGCATGTGAATGCCTCGATAAAT GCCGGGATACACCTTGTGAGTGAGGACCTGGCGGGGTTCTATGTCGCGGG GAGGGAGTGCGAAGTCAAAACGTTGGAGTCAGATGCGATCACAAAATTCA AGGAGAGAGGATATGCACTGTGTTACAAGGGGCTTGACGGTAACGAGAAG GAGGAGATCGAGGGGGAGGGAGTTGCCCTGGTGGTGGTCCAGAACTTGCA GGGCCGTCAGCGTTTGGGGGGATGGCGGGGATGGACTCTGCCGGATACCA GCCCGGCGCTCCTATATTTGGGTGGGAACATATCGTCGTGCCAGATATGT GGTTTGGACAACGTGGAAGTGCAAGGGCCTGCGACGGGGGCATGTTATGA CGCAGAGGCGACAGAACCGGCGGTCTGTCCAGCAGATCAATCTCCTCGTA AGACAGCAGCATTAGCGGGCGAGCCACCTGTAGTAATAGCGCCAGTTGCC AACACCATTATCGACAGCAGCAGCAGCAGCAACTCCACACGTGATGTCAA GAACAAACTCTTTGGATTGAACGCCAGGGTCCGTCGACTCATTGCAGGCA GGAGCGAGAACGATCGCGTAAGACAAGCCACAGAGGCCACAGAAGCAGCA GCCGCAGCGGCAGCAGATGATGACCACGAGCCAGATGCCTTTCTACCTGA TACATACGTGATTACTGCTGACTTGGTTCTCAACTGCTCTTCTTTGTTCT CCACCACGAACGAAAGTGTTGTTGTCGCCACTTGTGGATGTGGTACCACG GCAAGGGAGCTGCAAGACCTGTTGGAGGAGAGTTGGCTTAAGGATCTGGG AGCAGAGGACGATACTACCGTGGTCATAACGCCTTTCAAGTCCTCTGACA GTTTGCTTGAGACCTTGGGAATTCTTTCTATCAATGGAAGAAGTAACAGT AGCGGTAGTAGCAGTAATCCCTCCGAACCCTCCACGGCGTGTACCAAACA AGAGATCTATGCGACTTACCTGCATACGACTGACAAGGTCACGTTCGAGA AGCTCAAACACTCCCTCTTGGCCACCGACAGCAGCAGCAGCACTAGCGGC AGAAGTAATATCATCACTTTGCTCTCAAGCCGCCTATCTCTTCTCTTGGC GGCCCTCTACCCGCAGATTTGCCACGTTAATCTTACCCTACAAGACAGCC TCTTTGTGCCCCCCCCCGTAAAAAATCCTACCTCTTCAATCGGTACGGCC GCAAGCAGTGACAGCAGCGGCAACAACCGACCATCAGGCATCTCGGGCGG CATCACTTTACCGCGCGTGTGGGTGAATATCACCACGCCTGTAATTTCGG TAGGGAACACGTACCAAGTGGCCATCTCTGACTTTGATGACGGGGATCGT GTGGGTTTACAGCTGGTGGCTTCTTTTTCGAAAGATAAGAAGGACAAGAA GGCCACCCCATCTCTCTTCTTTCAATCTACCCCTCGGCCTCTGTACACAT TTCGTCCATTCGATGCGCTGGCAGGAAACCAGACATGGGGATGGCAGACT TCTGCTCTGACGTTTAGGGGTATGGGTAGCGGGCCATTTTTCCTGAAAGC ATTTGATATTTTGGAGCCGAAGCGGTTTGTGCTGAGTCAAGCCTTTGAAT TGGAAGGGGTGACTGCCACAGCTGGTACTGTGAGAGGGCTCAATGCTGGG ACAAGGAATGCAGGAACAAGCTCTGCGACATTAAAGACGAGGGCCGAGCA CATTGTCCGGCGGCTTTCCGGCCAATTTTCCGGAAGCGAGGAAGAGGAAG AGCAGCAAGATATCCCCAAGCTCGAGGACAACGACGACAGCAATCTTAAC CTTATCTCCATAATGTCCACCCTGCTTGTCTCTCCCAATTCCGAGGAGGC ATTTTCGATAACGAGGAACCTCTGGAAGGCTCTCCTTGCCCTCCCCTCCT CTCAAAAGGCACTCAAAAACCCCGCCCTTGCTCGGCAACTCTTAGAGCGA GTGCCAGCCCTTCAAACCGCGCCTGCTATTCTTGCACTGGATGCGAATGG CGAGGCCGGCTGGAAAGACTCGGTCCAGATTCAAGCTGCTATGGGAAAAG CGATAGCTGATTTCATGGATATGTCCTTGTCTGCCCTGCAACAGCAGCGA CGGCAGCAGCAAAAGCAGAAAGCGGGTGCCTTGTTTCGTCAAAATGACGA GGGGGTAGATACAGCGAACCAATGGCCGACTAAAATCTTTGAAAGCTTAA CGCCGGAAGAGGAGGCATTGGCGAAGCGTATAGCACAGGAACGGGATATA GCATCGATGAATGTGTTGATGGATTCGCAGGCCGCGAGACGATTTGGGGG AATGACAATGGCGAGGCTCCAGGATGCGGGGGTAGGGGAGGATATCAAAG AGATGCTTGGGTCGACCGACATATTTAGGGACTTAATTGATGACCCAGAA CTGTGGAAGGCACTATGAGTGGGAGAGGCGAACGTTGTACTCTAGGTAGG TTTTCTTCTGGTACATGAAGGAAAAGGTGAGGTAGGGAAGAGGAGTGAGG GTAGAATATGAATCCCGACAGAGCGTGTTTTAAAGGTGTTTATAAATGAG CATATCATATCTGCATGTATTTAATGCGAATATACAAAGAAATGTTAGCG CGATGCTTCACTATGAGAGAGTCACAGGAGAGAGAATGGCCCTCCTCCCT GTTGTCGGAGAGAACAAAAGCCATGCAGG
back to top

Coding sequence (CDS) from alignment at scaffold_10:587441..592169+

>mRNA_4435 ID=mRNA_4435|Name=jgi.p|Nanoce1779_2|589099|organism=Nannochloropsis oceanica|type=CDS|length=8358bp|location=Sequence derived from alignment at scaffold_10:587441..592169+ (Nannochloropsis oceanica)
ATGTGGCAACGGCGACCGTCCGTCTCGGGCAAATATGCGGAGGAGGCGGG
CCACTATTCTTTTCCCCCACCCATTGACCATGCTCCAGTCGTCACGGTCG
TTGATACCACCACGAGCAGCACGAACCGCCGAATCATGCCTAGATCTCCA
GATCGTTCCGTGTCGGTAGTGGGCATCCTGCTTGCCTTCCCGTGCCTTGT
ATTCGCCGTTGTCTTTTACAGTCATCACAAAAATACCAGCAACAGCAATA
GCATCCAGCCGCAACGTGCCCTCGACACGCTGATAGCTTTTCCCAATCTC
TTCTTTTGGAATTTAAAGGGCACCATCAAAGTCGGGGTTGAGGAGGAAGC
GGCCATAGTGGGCATTTCTCCTGGACGGGTGGGCGAGTGGTTTGATGCCT
TGAACCCACTGACGGATGCCTTGGACATGACGGCAGATGTGGAAGGATTC
AATGCCGCGTGGGAAGGCTTTTGGCTCCGAAATGGGCGGACGTGCCTGGC
AGACAGCACCAAACGGCTTAAGGAAGCTGTAGAGTCAGCCTGCGACGTTG
TGTTGCTCTTACCGGGACATATCTATCATTTAAAAAAGATGATAAACGTG
TGGAGACCAATCACGCTGATAGGCAATCCGGCGGAGAGGCCGATTATCAA
CGCCGCAAAAGCCGAGCGGGCATTTTGGGTGCATTCGAAGGCGAGCATGG
ACATACGACACATAATGTTTTATGAAGGCGAAGGGGACGTGATTCGAAAC
GAGATCCGAACTCGGTTTGGTGGGGTTGTGTATTTGTCAAGTGGTGCGAA
CCTTTTCGCCTTTGATTGTTTATTTACGATCCAGCCAACGCGTGAGGCGA
TCTTCAACGACAGACCAGAGTTTATTTTTGGTGGGGACCTCCTTATGGTA
GGCGGCGTCATGAACATCCTTGCGTGCTCATTTTTTGCGATCGTGCCCGG
TTTTGTTAACTCCATCTCGACGGAGATAGGCGGCTCGGTCTTGATCCTGG
GGGGGAAGGCGACATTTACTTTGGTAAACTTCATGACAACGCAAATCTTT
GCTTTCAATGCAGGAAGTGGGATGCACCTCGCCCTCTTAGGTGGGGCGAT
GTCGATGCAAGCCTGCACGCATACGGCCAACTTGGTCTTTGCTGTACAAG
GGATTGTAGGGCGTAATATTTTTGTAGGGGGTGGAATCGGCGTGTTTACG
GGGTGTGTCATTACAGATTCAATTTGTTTTTTGGCATTCTACGGCGCAGG
TTTTAGCATTTTCATTGGAGCAGGAGGTGGGATTTTTGCTGGCTGCGAGA
TCATGTTAAACAGTGCCATTGGCCATAAGGCCGGTGTTGGGATAGCTGTG
GCTGTGGGAGCAGGCACAGGCTTGTTCTACGGCACGGTATTTTCGAAAAA
TTTGGGGATTACACTGTTCAACACACTTGGCGTGTTCATATTTGTTGGCA
CGGGTCGCCTGGCTCTTGTGGGGTGTCCCTTCGCGCACCAAAATGCCATA
GCGGCCTGGCAGCTTTTGGGAGGAGCCATCTACCTCGGAACAGGTCAAGC
CGTGGTGATTGGTTGTGTTTTCACAAGGTCGTTGGGCCTTGATTCGTTCA
CAGGGCTGGGCGGAGATATTTTTGTTGGTGCTGGACAGCTGGTATTGGTC
CACTCTGTGTTCACGAGCAACACGGGCATAACTGCCTTCCTCGGACAGGG
CTCGGACTTGTACTTGGCAGCGGGAAGTGCGTATATAAAGCATGTGAATG
CCTCGATAAATGCCGGGATACACCTTGTGAGTGAGGACCTGGCGGGGTTC
TATGTCGCGGGGAGGGAGTGCGAAGTCAAAACGTTGGAGTCAGATGCGAT
CACAAAATTCAAGGAGAGAGGATATGCACTGTGTTACAAGGGGCTTGACG
GTAACGAGAAGGAGGAGATCGAGGGGGAGGGAGTTGCCCTGGTGGTGGTC
CAGAACTTGCAGGGCCGTCAGCGTTTGGGGGGATGGCGGGGATGGACTCT
GCCGGATACCAGCCCGGCGCTCCTATATTTGGGTGGGAACATATCGTCGT
GCCAGATATGTGGTTTGGACAACGTGGAAGTGCAAGGGCCTGCGACGGGG
GCATGTTATGACGCAGAGGCGACAGAACCGGCGGTCTGTCCAGCAGATCA
ATCTCCTCGTAAGACAGCAGCATTAGCGGGCGAGCCACCTGTAGTAATAG
CGCCAGTTGCCAACACCATTATCGACAGCAGCAGCAGCAGCAACTCCACA
CGTGATGTCAAGAACAAACTCTTTGGATTGAACGCCAGGGTCCGTCGACT
CATTGCAGGCAGGAGCGAGAACGATCGCGTAAGACAAGCCACAGAGGCCA
CAGAAGCAGCAGCCGCAGCGGCAGCAGATGATGACCACGAGCCAGATGCC
TTTCTACCTGATACATACGTGATTACTGCTGACTTGGTTCTCAACTGCTC
TTCTTTGTTCTCCACCACGAACGAAAGTGTTGTTGTCGCCACTTGTGGAT
GTGGTACCACGGCAAGGGAGCTGCAAGACCTGTTGGAGGAGAGTTGGCTT
AAGGATCTGGGAGCAGAGGACGATACTACCGTGGTCATAACGCCTTTCAA
GTCCTCTGACAGTTTGCTTGAGACCTTGGGAATTCTTTCTATCAATGGAA
GAAGTAACAGTAGCGGTAGTAGCAGTAATCCCTCCGAACCCTCCACGGCG
TGTACCAAACAAGAGATCTATGCGACTTACCTGCATACGACTGACAAGGT
CACGTTCGAGAAGCTCAAACACTCCCTCTTGGCCACCGACAGCAGCAGCA
GCACTAGCGGCAGAAGTAATATCATCACTTTGCTCTCAAGCCGCCTATCT
CTTCTCTTGGCGGCCCTCTACCCGCAGATTTGCCACGTTAATCTTACCCT
ACAAGACAGCCTCTTTGTGCCCCCCCCCGTAAAAAATCCTACCTCTTCAA
TCGGTACGGCCGCAAGCAGTGACAGCAGCGGCAACAACCGACCATCAGGC
ATCTCGGGCGGCATCACTTTACCGCGCGTGTGGGTGAATATCACCACGCC
TGTAATTTCGGTAGGGAACACGTACCAAGTGGCCATCTCTGACTTTGATG
ACGGGGATCGTGTGGGTTTACAGCTGGTGGCTTCTTTTTCGAAAGATAAG
AAGGACAAGAAGGCCACCCCATCTCTCTTCTTTCAATCTACCCCTCGGCC
TCTGTACACATTTCGTCCATTCGATGCGCTGGCAGGAAACCAGACATGGG
GATGGCAGACTTCTGCTCTGACGTTTAGGGGTATGGGTAGCGGGCCATTT
TTCCTGAAAGCATTTGATATTTTGGAGCCGAAGCGGTTTGTGCTGAGTCA
AGCCTTTGAATTGGAAGGGGTGACTGCCACAGCTGGTACTGTGAGAGGGC
TCAATGCTGGGACAAGGAATGCAGGAACAAGCTCTGCGACATTAAAGACG
AGGGCCGAGCACATTGTCCGGCGGCTTTCCGGCCAATTTTCCGGAAGCGA
GGAAGAGGAAGAGCAGCAAGATATCCCCAAGCTCGAGGACAACGACGACA
GCAATCTTAACCTTATCTCCATAATGTCCACCCTGCTTGTCTCTCCCAAT
TCCGAGGAGGCATTTTCGATAACGAGGAACCTCTGGAAGGCTCTCCTTGC
CCTCCCCTCCTCTCAAAAGGCACTCAAAAACCCCGCCCTTGCTCGGCAAC
TCTTAGAGCGAGTGCCAGCCCTTCAAACCGCGCCTGCTATTCTTGCACTG
GATGCGAATGGCGAGGCCGGCTGGAAAGACTCGGTCCAGATTCAAGCTGC
TATGGGAAAAGCGATAGCTGATTTCATGGATATGTCCTTGTCTGCCCTGC
AACAGCAGCGACGGCAGCAGCAAAAGCAGAAAGCGGGTGCCTTGTTTCGT
CAAAATGACGAGGGGGTAGATACAGCGAACCAATGGCCGACTAAAATCTT
TGAAAGCTTAACGCCGGAAGAGGAGGCATTGGCGAAGCGTATAGCACAGG
AACGGGATATAGCATCGATGAATGTGTTGATGGATTCGCAGGCCGCGAGA
CGATTTGGGGGAATGACAATGGCGAGGCTCCAGGATGCGGGGGTAGGGGA
GGATATCAAAGAGATGCTTGGGTCGACCGACATATTTAGGGACTTAATTG
ATGACCCAGAACTGTGGAAGGCACTATGAATGTGGCAACGGCGACCGTCC
GTCTCGGGCAAATATGCGGAGGAGGCGGGCCACTATTCTTTTCCCCCACC
CATTGACCATGCTCCAGTCGTCACGGTCGTTGATACCACCACGAGCAGCA
CGAACCGCCGAATCATGCCTAGATCTCCAGATCGTTCCGTGTCGGTAGTG
GGCATCCTGCTTGCCTTCCCGTGCCTTGTATTCGCCGTTGTCTTTTACAG
TCATCACAAAAATACCAGCAACAGCAATAGCATCCAGCCGCAACGTGCCC
TCGACACGCTGATAGCTTTTCCCAATCTCTTCTTTTGGAATTTAAAGGGC
ACCATCAAAGTCGGGGTTGAGGAGGAAGCGGCCATAGTGGGCATTTCTCC
TGGACGGGTGGGCGAGTGGTTTGATGCCTTGAACCCACTGACGGATGCCT
TGGACATGACGGCAGATGTGGAAGGATTCAATGCCGCGTGGGAAGGCTTT
TGGCTCCGAAATGGGCGGACGTGCCTGGCAGACAGCACCAAACGGCTTAA
GGAAGCTGTAGAGTCAGCCTGCGACGTTGTGTTGCTCTTACCGGGACATA
TCTATCATTTAAAAAAGATGATAAACGTGTGGAGACCAATCACGCTGATA
GGCAATCCGGCGGAGAGGCCGATTATCAACGCCGCAAAAGCCGAGCGGGC
ATTTTGGGTGCATTCGAAGGCGAGCATGGACATACGACACATAATGTTTT
ATGAAGGCGAAGGGGACGTGATTCGAAACGAGATCCGAACTCGGTTTGGT
GGGGTTGTGTATTTGTCAAGTGGTGCGAACCTTTTCGCCTTTGATTGTTT
ATTTACGATCCAGCCAACGCGTGAGGCGATCTTCAACGACAGACCAGAGT
TTATTTTTGGTGGGGACCTCCTTATGGTAGGCGGCGTCATGAACATCCTT
GCGTGCTCATTTTTTGCGATCGTGCCCGGTTTTGTTAACTCCATCTCGAC
GGAGATAGGCGGCTCGGTCTTGATCCTGGGGGGGAAGGCGACATTTACTT
TGGTAAACTTCATGACAACGCAAATCTTTGCTTTCAATGCAGGAAGTGGG
ATGCACCTCGCCCTCTTAGGTGGGGCGATGTCGATGCAAGCCTGCACGCA
TACGGCCAACTTGGTCTTTGCTGTACAAGGGATTGTAGGGCGTAATATTT
TTGTAGGGGGTGGAATCGGCGTGTTTACGGGGTGTGTCATTACAGATTCA
ATTTGTTTTTTGGCATTCTACGGCGCAGGTTTTAGCATTTTCATTGGAGC
AGGAGGTGGGATTTTTGCTGGCTGCGAGATCATGTTAAACAGTGCCATTG
GCCATAAGGCCGGTGTTGGGATAGCTGTGGCTGTGGGAGCAGGCACAGGC
TTGTTCTACGGCACGGTATTTTCGAAAAATTTGGGGATTACACTGTTCAA
CACACTTGGCGTGTTCATATTTGTTGGCACGGGTCGCCTGGCTCTTGTGG
GGTGTCCCTTCGCGCACCAAAATGCCATAGCGGCCTGGCAGCTTTTGGGA
GGAGCCATCTACCTCGGAACAGGTCAAGCCGTGGTGATTGGTTGTGTTTT
CACAAGGTCGTTGGGCCTTGATTCGTTCACAGGGCTGGGCGGAGATATTT
TTGTTGGTGCTGGACAGCTGGTATTGGTCCACTCTGTGTTCACGAGCAAC
ACGGGCATAACTGCCTTCCTCGGACAGGGCTCGGACTTGTACTTGGCAGC
GGGAAGTGCGTATATAAAGCATGTGAATGCCTCGATAAATGCCGGGATAC
ACCTTGTGAGTGAGGACCTGGCGGGGTTCTATGTCGCGGGGAGGGAGTGC
GAAGTCAAAACGTTGGAGTCAGATGCGATCACAAAATTCAAGGAGAGAGG
ATATGCACTGTGTTACAAGGGGCTTGACGGTAACGAGAAGGAGGAGATCG
AGGGGGAGGGAGTTGCCCTGGTGGTGGTCCAGAACTTGCAGGGCCGTCAG
CGTTTGGGGGGATGGCGGGGATGGACTCTGCCGGATACCAGCCCGGCGCT
CCTATATTTGGGTGGGAACATATCGTCGTGCCAGATATGTGGTTTGGACA
ACGTGGAAGTGCAAGGGCCTGCGACGGGGGCATGTTATGACGCAGAGGCG
ACAGAACCGGCGGTCTGTCCAGCAGATCAATCTCCTCGTAAGACAGCAGC
ATTAGCGGGCGAGCCACCTGTAGTAATAGCGCCAGTTGCCAACACCATTA
TCGACAGCAGCAGCAGCAGCAACTCCACACGTGATGTCAAGAACAAACTC
TTTGGATTGAACGCCAGGGTCCGTCGACTCATTGCAGGCAGGAGCGAGAA
CGATCGCGTAAGACAAGCCACAGAGGCCACAGAAGCAGCAGCCGCAGCGG
CAGCAGATGATGACCACGAGCCAGATGCCTTTCTACCTGATACATACGTG
ATTACTGCTGACTTGGTTCTCAACTGCTCTTCTTTGTTCTCCACCACGAA
CGAAAGTGTTGTTGTCGCCACTTGTGGATGTGGTACCACGGCAAGGGAGC
TGCAAGACCTGTTGGAGGAGAGTTGGCTTAAGGATCTGGGAGCAGAGGAC
GATACTACCGTGGTCATAACGCCTTTCAAGTCCTCTGACAGTTTGCTTGA
GACCTTGGGAATTCTTTCTATCAATGGAAGAAGTAACAGTAGCGGTAGTA
GCAGTAATCCCTCCGAACCCTCCACGGCGTGTACCAAACAAGAGATCTAT
GCGACTTACCTGCATACGACTGACAAGGTCACGTTCGAGAAGCTCAAACA
CTCCCTCTTGGCCACCGACAGCAGCAGCAGCACTAGCGGCAGAAGTAATA
TCATCACTTTGCTCTCAAGCCGCCTATCTCTTCTCTTGGCGGCCCTCTAC
CCGCAGATTTGCCACGTTAATCTTACCCTACAAGACAGCCTCTTTGTGCC
CCCCCCCGTAAAAAATCCTACCTCTTCAATCGGTACGGCCGCAAGCAGTG
ACAGCAGCGGCAACAACCGACCATCAGGCATCTCGGGCGGCATCACTTTA
CCGCGCGTGTGGGTGAATATCACCACGCCTGTAATTTCGGTAGGGAACAC
GTACCAAGTGGCCATCTCTGACTTTGATGACGGGGATCGTGTGGGTTTAC
AGCTGGTGGCTTCTTTTTCGAAAGATAAGAAGGACAAGAAGGCCACCCCA
TCTCTCTTCTTTCAATCTACCCCTCGGCCTCTGTACACATTTCGTCCATT
CGATGCGCTGGCAGGAAACCAGACATGGGGATGGCAGACTTCTGCTCTGA
CGTTTAGGGGTATGGGTAGCGGGCCATTTTTCCTGAAAGCATTTGATATT
TTGGAGCCGAAGCGGTTTGTGCTGAGTCAAGCCTTTGAATTGGAAGGGGT
GACTGCCACAGCTGGTACTGTGAGAGGGCTCAATGCTGGGACAAGGAATG
CAGGAACAAGCTCTGCGACATTAAAGACGAGGGCCGAGCACATTGTCCGG
CGGCTTTCCGGCCAATTTTCCGGAAGCGAGGAAGAGGAAGAGCAGCAAGA
TATCCCCAAGCTCGAGGACAACGACGACAGCAATCTTAACCTTATCTCCA
TAATGTCCACCCTGCTTGTCTCTCCCAATTCCGAGGAGGCATTTTCGATA
ACGAGGAACCTCTGGAAGGCTCTCCTTGCCCTCCCCTCCTCTCAAAAGGC
ACTCAAAAACCCCGCCCTTGCTCGGCAACTCTTAGAGCGAGTGCCAGCCC
TTCAAACCGCGCCTGCTATTCTTGCACTGGATGCGAATGGCGAGGCCGGC
TGGAAAGACTCGGTCCAGATTCAAGCTGCTATGGGAAAAGCGATAGCTGA
TTTCATGGATATGTCCTTGTCTGCCCTGCAACAGCAGCGACGGCAGCAGC
AAAAGCAGAAAGCGGGTGCCTTGTTTCGTCAAAATGACGAGGGGGTAGAT
ACAGCGAACCAATGGCCGACTAAAATCTTTGAAAGCTTAACGCCGGAAGA
GGAGGCATTGGCGAAGCGTATAGCACAGGAACGGGATATAGCATCGATGA
ATGTGTTGATGGATTCGCAGGCCGCGAGACGATTTGGGGGAATGACAATG
GCGAGGCTCCAGGATGCGGGGGTAGGGGAGGATATCAAAGAGATGCTTGG
GTCGACCGACATATTTAGGGACTTAATTGATGACCCAGAACTGTGGAAGG
CACTATGA
back to top
Synonyms
Publications