jgi.p|Nanoce1779_2|589093, mRNA_4434 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589093
Unique Name	mRNA_4434
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1223
Alignment location	scaffold_10:585392..587332 +

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Properties


Property Name	Value
TranscriptId	589179
Track	FilteredModels2
ProteinId	589093

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:585392..587332 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589093	gene_4434	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589093	mRNA_4434-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4434	CDS_4434	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:585392..587332+
coding sequence from alignment at scaffold_10:585392..587332+

mRNA sequence

>mRNA_4434 ID=mRNA_4434|Name=jgi.p|Nanoce1779_2|589093|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp
ACAGAAACTATGGCCTCGTGGTCGTTCTCTTTTCCCATCGGCGCGGTTGT
CCACGGCTTCTTGGACGGTACGGCAGAGCCTTACCAATGGGGCATATTGG
CAGGTTGCGTCGTGTACATTGCAACGGTCCTGGTGGTGCTGTGCTTATTG
GTGGCCGGCGGCTCCTTCAAGCGGATGCGCGAGCAGGCAGAAGCCTACCA
GCAACATGGCGCCAAGGCATTCCAAGTCCCTCTTACAGCCAAACCCCGCC
TATACGACGCCCTCCTCGATTCGTCCCACACCCTTCCTCGTACCCCCTAC
ATCAAAGGAGAACGTCTGCAGGGCCGAGGAATCGAGCTGGTGGTGCTTGG
GGACAAGGAGGAGGCAATGAAAACATTATTTGAGATAAGTGATGGTTCTC
CGCGGTATGGCCATGGGAGCTATGACCCCTTGGAGAAGATCTGGCGGTGG
ATGCCAGCAGAGATGGGGCCGCATGAGCAGGCCAAGGGGATGATAGAGGG
GTTGAGGGAGCGGGTAAAAGAAGAGGGGGATATGGTTTTCTACGTGCGTG
ACCAACCCTCCGGTTACATCATCGGCATGGCCTGCCTCCTCCACAACACT
CCTTTGCACTTACGAGCCGAAATTGGGGACATATGGCTGACCCCTGCGTT
TCGTGGCACTTACGCAGTTCTGGAGGTGGGCCAGTTGCTTCTCCGATATC
TATTTGATAGGCTAGGCTACCGCCGCGTGGAATGGCGTTGCGATACGGAC
AACTACGGGGCAAAAAAGACGGCAGAGCGCATGGGGTTTATGAATGAGGG
CGTGCTGCGTAAGCACATGATCTGGAGGGACGCCAACAGAGACACAGCCG
TGTATTCTTTGACCAATTCGGATTGGCGGGATGGTGCCGCGGACCACTTG
GAGGCTTTGGTAAAGCAAAGGTTGGAGGGAGTGAAGGGGCTAAGGAGTTT
GAGGGCAGAGGAAGAGGAGGGAGAGGAGTTGGCAGGCGGTCTTGAGGCGG
AGGTGAGCGCAGCAGCAGTCAAAAAACAGAATATGGCGGCGGAGTTGGAC
AAGGAGAAATGTGCAAAGAAATTCAGGTAAAGATGACTTACACTCTAATA
TTTAAAATAAAGATGACTGAAAGAAGAAAAAACTTACAATAGCAGAAATG
AATGAAAGGAACTCAAGGTTGCCCCCCCGGAGATGGGTGTGTGTAAAAAG
AATCAATCGCTAACTTAGTAATT

protein sequence of jgi.p|Nanoce1779_2|589093

>mRNA_4434-protein ID=mRNA_4434-protein|Name=jgi.p|Nanoce1779_2|589093|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MASWSFSFPIGAVVHGFLDGTAEPYQWGILAGCVVYIATVLVVLCLLVAG
GSFKRMREQAEAYQQHGAKAFQVPLTAKPRLYDALLDSSHTLPRTPYIKG
ERLQGRGIELVVLGDKEEAMKTLFEISDGSPRYGHGSYDPLEKIWRWMPA
EMGPHEQAKGMIEGLRERVKEEGDMVFYVRDQPSGYIIGMACLLHNTPLH
LRAEIGDIWLTPAFRGTYAVLEVGQLLLRYLFDRLGYRRVEWRCDTDNYG
AKKTAERMGFMNEGVLRKHMIWRDANRDTAVYSLTNSDWRDGAADHLEAL
VKQRLEGVKGLRSLRAEEEEGEELAGGLEAEVSAAAVKKQNMAAELDKEK
CAKKFR*

mRNA from alignment at scaffold_10:585392..587332+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4434 ID=mRNA_4434|Name=jgi.p|Nanoce1779_2|589093|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp|location=Sequence derived from alignment at scaffold_10:585392..587332+ (Nannochloropsis oceanica)
ACAGAAACTATGGCCTCGTGGTCGTTCTCTTTTCCCATCGGCGCGGTTGT
CCACGGCTTCTTGGACGGTACGGCAGAGGTAAGGCTTACGCTGCCCCACT
ACGATGAGGCAGCCTCCTCCCCTTCTTCTCTCCCCTAATTTCTCCCTCCG
CACTCAACTCACCACCGTCACTATAGCCTTACCAATGGGGCATATTGGCA
GGTTGCGTCGTGTACATTGCAACGGTCCTGGTGGTGCTGTGCTTATTGGT
GGCCGGCGGCTCCTTCAAGCGGATGCGCGAGCAGGTGAGTTGCTTGTAAA
TATGCTATTGCGGACGGAAGGATTAGGATGTGAAGTGTACCACGGCGGAT
ATGTGCATAATTTCCTTACCTAGATGCACATTCATCGACGATATCTGCGC
CACTCACAACTGTCAAAGCGCCTTGCATGTCCTAGCGCCACCATCTCCTC
TCGCTCCCACCTCTCCCTTCCTGATTGTTAACCTCCGCACTCATACCCAC
GCCCGCCCGCTCTTCCCTTTCTCCCAATACATGGACAACCAGGCAGAAGC
CTACCAGCAACATGGCGCCAAGGCATTCCAAGTCCCTCTTACAGCCAAAC
CCCGCCTATACGACGCCCTCCTCGATTCGTCCCACACCCTTCCTCGTACC
CCCTACATCAAAGGAGAACGTCTGCAGGGCCGAGGAATCGAGCTGGTGGT
GCTTGGGGACAAGGAGGAGGCAATGAAAACATTATTTGAGATAAGTGATG
GTTCTCCGCGGTATGGCCATGGGAGCTATGACCCCTTGGAGAAGATCTGG
CGGTGGATGCCAGCAGAGATGGGGCCGCATGAGCAGGCCAAGGGGATGAT
AGAGGGGTTGAGGGAGCGGGTAAAAGAAGAGGGGGATATGGTTTTCTACG
TGGTGAGTGAAAGAGTCGAAAGGATGGAGGAATGTATGGTCGAAAGGATG
GGGGGGGGGGAATGTATGCCATGTTTGCCCTGTTCAAGGAGGAGGAGGGC
AAAGCTCCCTCTATCAGACACTCCGTTGTATCCTCCACCACCACCACCAC
TTTGCCACTTAGACTACAAGAATACTAAGCACAAGACCAAAATTATACCC
CCATCCTTCACTCCAGCGTGACCAACCCTCCGGTTACATCATCGGCATGG
CCTGCCTCCTCCACAACACTCCTTTGCACTTACGAGCCGAAATTGGGGAC
ATATGGCTGACCCCTGCGTTTCGTGGCACTTACGCAGTTCTGGAGGTGGG
CCAGTTGCTTCTCCGATATCTATTTGATAGGCTAGGGTGAGTAAAGTCAA
AGGCAGGGGAAATAAGAGATGTAGGGAGGAAGGGGAAAAGGGGGAAGAAA
GGAATCGATTATCTGTTGACTTCGAGAGGGATGGATCCATTTACCACGCA
TGCCGAATTAACTTTATTTTGACCTCTCATGCAGCTACCGCCGCGTGGAA
TGGCGTTGCGATACGGACAACTACGGGGCAAAAAAGACGGCAGAGCGCAT
GGGGTTTATGAATGAGGGCGTGCTGCGTAAGCACATGATCTGGAGGGACG
CCAACAGAGACACAGCCGTGTATTCTTTGACCAATTCGGATTGGCGGGAT
GGTGCCGCGGACCACTTGGAGGCTTTGGTAAAGCAAAGGTTGGAGGGAGT
GAAGGGGCTAAGGAGTTTGAGGGCAGAGGAAGAGGAGGGAGAGGAGTTGG
CAGGCGGTCTTGAGGCGGAGGTGAGCGCAGCAGCAGTCAAAAAACAGAAT
ATGGCGGCGGAGTTGGACAAGGAGAAATGTGCAAAGAAATTCAGGTAAAG
ATGACTTACACTCTAATATTTAAAATAAAGATGACTGAAAGAAGAAAAAA
CTTACAATAGCAGAAATGAATGAAAGGAACTCAAGGTTGCCCCCCCGGAG
ATGGGTGTGTGTAAAAAGAATCAATCGCTAACTTAGTAATT

Coding sequence (CDS) from alignment at scaffold_10:585392..587332+

>mRNA_4434 ID=mRNA_4434|Name=jgi.p|Nanoce1779_2|589093|organism=Nannochloropsis oceanica|type=CDS|length=5355bp|location=Sequence derived from alignment at scaffold_10:585392..587332+ (Nannochloropsis oceanica)
ATGGCCTCGTGGTCGTTCTCTTTTCCCATCGGCGCGGTTGTCCACGGCTT
CTTGGACGGTACGGCAGAGCCTTACCAATGGGGCATATTGGCAGGTTGCG
TCGTGTACATTGCAACGGTCCTGGTGGTGCTGTGCTTATTGGTGGCCGGC
GGCTCCTTCAAGCGGATGCGCGAGCAGGCAGAAGCCTACCAGCAACATGG
CGCCAAGGCATTCCAAGTCCCTCTTACAGCCAAACCCCGCCTATACGACG
CCCTCCTCGATTCGTCCCACACCCTTCCTCGTACCCCCTACATCAAAGGA
GAACGTCTGCAGGGCCGAGGAATCGAGCTGGTGGTGCTTGGGGACAAGGA
GGAGGCAATGAAAACATTATTTGAGATAAGTGATGGTTCTCCGCGGTATG
GCCATGGGAGCTATGACCCCTTGGAGAAGATCTGGCGGTGGATGCCAGCA
GAGATGGGGCCGCATGAGCAGGCCAAGGGGATGATAGAGGGGTTGAGGGA
GCGGGTAAAAGAAGAGGGGGATATGGTTTTCTACGTGCGTGACCAACCCT
CCGGTTACATCATCGGCATGGCCTGCCTCCTCCACAACACTCCTTTGCAC
TTACGAGCCGAAATTGGGGACATATGGCTGACCCCTGCGTTTCGTGGCAC
TTACGCAGTTCTGGAGGTGGGCCAGTTGCTTCTCCGATATCTATTTGATA
GGCTAGGCTACCGCCGCGTGGAATGGCGTTGCGATACGGACAACTACGGG
GCAAAAAAGACGGCAGAGCGCATGGGGTTTATGAATGAGGGCGTGCTGCG
TAAGCACATGATCTGGAGGGACGCCAACAGAGACACAGCCGTGTATTCTT
TGACCAATTCGGATTGGCGGGATGGTGCCGCGGACCACTTGGAGGCTTTG
GTAAAGCAAAGGTTGGAGGGAGTGAAGGGGCTAAGGAGTTTGAGGGCAGA
GGAAGAGGAGGGAGAGGAGTTGGCAGGCGGTCTTGAGGCGGAGGTGAGCG
CAGCAGCAGTCAAAAAACAGAATATGGCGGCGGAGTTGGACAAGGAGAAA
TGTGCAAAGAAATTCAGGTAAATGGCCTCGTGGTCGTTCTCTTTTCCCAT
CGGCGCGGTTGTCCACGGCTTCTTGGACGGTACGGCAGAGCCTTACCAAT
GGGGCATATTGGCAGGTTGCGTCGTGTACATTGCAACGGTCCTGGTGGTG
CTGTGCTTATTGGTGGCCGGCGGCTCCTTCAAGCGGATGCGCGAGCAGGC
AGAAGCCTACCAGCAACATGGCGCCAAGGCATTCCAAGTCCCTCTTACAG
CCAAACCCCGCCTATACGACGCCCTCCTCGATTCGTCCCACACCCTTCCT
CGTACCCCCTACATCAAAGGAGAACGTCTGCAGGGCCGAGGAATCGAGCT
GGTGGTGCTTGGGGACAAGGAGGAGGCAATGAAAACATTATTTGAGATAA
GTGATGGTTCTCCGCGGTATGGCCATGGGAGCTATGACCCCTTGGAGAAG
ATCTGGCGGTGGATGCCAGCAGAGATGGGGCCGCATGAGCAGGCCAAGGG
GATGATAGAGGGGTTGAGGGAGCGGGTAAAAGAAGAGGGGGATATGGTTT
TCTACGTGCGTGACCAACCCTCCGGTTACATCATCGGCATGGCCTGCCTC
CTCCACAACACTCCTTTGCACTTACGAGCCGAAATTGGGGACATATGGCT
GACCCCTGCGTTTCGTGGCACTTACGCAGTTCTGGAGGTGGGCCAGTTGC
TTCTCCGATATCTATTTGATAGGCTAGGCTACCGCCGCGTGGAATGGCGT
TGCGATACGGACAACTACGGGGCAAAAAAGACGGCAGAGCGCATGGGGTT
TATGAATGAGGGCGTGCTGCGTAAGCACATGATCTGGAGGGACGCCAACA
GAGACACAGCCGTGTATTCTTTGACCAATTCGGATTGGCGGGATGGTGCC
GCGGACCACTTGGAGGCTTTGGTAAAGCAAAGGTTGGAGGGAGTGAAGGG
GCTAAGGAGTTTGAGGGCAGAGGAAGAGGAGGGAGAGGAGTTGGCAGGCG
GTCTTGAGGCGGAGGTGAGCGCAGCAGCAGTCAAAAAACAGAATATGGCG
GCGGAGTTGGACAAGGAGAAATGTGCAAAGAAATTCAGGTAAATGGCCTC
GTGGTCGTTCTCTTTTCCCATCGGCGCGGTTGTCCACGGCTTCTTGGACG
GTACGGCAGAGCCTTACCAATGGGGCATATTGGCAGGTTGCGTCGTGTAC
ATTGCAACGGTCCTGGTGGTGCTGTGCTTATTGGTGGCCGGCGGCTCCTT
CAAGCGGATGCGCGAGCAGGCAGAAGCCTACCAGCAACATGGCGCCAAGG
CATTCCAAGTCCCTCTTACAGCCAAACCCCGCCTATACGACGCCCTCCTC
GATTCGTCCCACACCCTTCCTCGTACCCCCTACATCAAAGGAGAACGTCT
GCAGGGCCGAGGAATCGAGCTGGTGGTGCTTGGGGACAAGGAGGAGGCAA
TGAAAACATTATTTGAGATAAGTGATGGTTCTCCGCGGTATGGCCATGGG
AGCTATGACCCCTTGGAGAAGATCTGGCGGTGGATGCCAGCAGAGATGGG
GCCGCATGAGCAGGCCAAGGGGATGATAGAGGGGTTGAGGGAGCGGGTAA
AAGAAGAGGGGGATATGGTTTTCTACGTGCGTGACCAACCCTCCGGTTAC
ATCATCGGCATGGCCTGCCTCCTCCACAACACTCCTTTGCACTTACGAGC
CGAAATTGGGGACATATGGCTGACCCCTGCGTTTCGTGGCACTTACGCAG
TTCTGGAGGTGGGCCAGTTGCTTCTCCGATATCTATTTGATAGGCTAGGC
TACCGCCGCGTGGAATGGCGTTGCGATACGGACAACTACGGGGCAAAAAA
GACGGCAGAGCGCATGGGGTTTATGAATGAGGGCGTGCTGCGTAAGCACA
TGATCTGGAGGGACGCCAACAGAGACACAGCCGTGTATTCTTTGACCAAT
TCGGATTGGCGGGATGGTGCCGCGGACCACTTGGAGGCTTTGGTAAAGCA
AAGGTTGGAGGGAGTGAAGGGGCTAAGGAGTTTGAGGGCAGAGGAAGAGG
AGGGAGAGGAGTTGGCAGGCGGTCTTGAGGCGGAGGTGAGCGCAGCAGCA
GTCAAAAAACAGAATATGGCGGCGGAGTTGGACAAGGAGAAATGTGCAAA
GAAATTCAGGTAAATGGCCTCGTGGTCGTTCTCTTTTCCCATCGGCGCGG
TTGTCCACGGCTTCTTGGACGGTACGGCAGAGCCTTACCAATGGGGCATA
TTGGCAGGTTGCGTCGTGTACATTGCAACGGTCCTGGTGGTGCTGTGCTT
ATTGGTGGCCGGCGGCTCCTTCAAGCGGATGCGCGAGCAGGCAGAAGCCT
ACCAGCAACATGGCGCCAAGGCATTCCAAGTCCCTCTTACAGCCAAACCC
CGCCTATACGACGCCCTCCTCGATTCGTCCCACACCCTTCCTCGTACCCC
CTACATCAAAGGAGAACGTCTGCAGGGCCGAGGAATCGAGCTGGTGGTGC
TTGGGGACAAGGAGGAGGCAATGAAAACATTATTTGAGATAAGTGATGGT
TCTCCGCGGTATGGCCATGGGAGCTATGACCCCTTGGAGAAGATCTGGCG
GTGGATGCCAGCAGAGATGGGGCCGCATGAGCAGGCCAAGGGGATGATAG
AGGGGTTGAGGGAGCGGGTAAAAGAAGAGGGGGATATGGTTTTCTACGTG
CGTGACCAACCCTCCGGTTACATCATCGGCATGGCCTGCCTCCTCCACAA
CACTCCTTTGCACTTACGAGCCGAAATTGGGGACATATGGCTGACCCCTG
CGTTTCGTGGCACTTACGCAGTTCTGGAGGTGGGCCAGTTGCTTCTCCGA
TATCTATTTGATAGGCTAGGCTACCGCCGCGTGGAATGGCGTTGCGATAC
GGACAACTACGGGGCAAAAAAGACGGCAGAGCGCATGGGGTTTATGAATG
AGGGCGTGCTGCGTAAGCACATGATCTGGAGGGACGCCAACAGAGACACA
GCCGTGTATTCTTTGACCAATTCGGATTGGCGGGATGGTGCCGCGGACCA
CTTGGAGGCTTTGGTAAAGCAAAGGTTGGAGGGAGTGAAGGGGCTAAGGA
GTTTGAGGGCAGAGGAAGAGGAGGGAGAGGAGTTGGCAGGCGGTCTTGAG
GCGGAGGTGAGCGCAGCAGCAGTCAAAAAACAGAATATGGCGGCGGAGTT
GGACAAGGAGAAATGTGCAAAGAAATTCAGGTAAATGGCCTCGTGGTCGT
TCTCTTTTCCCATCGGCGCGGTTGTCCACGGCTTCTTGGACGGTACGGCA
GAGCCTTACCAATGGGGCATATTGGCAGGTTGCGTCGTGTACATTGCAAC
GGTCCTGGTGGTGCTGTGCTTATTGGTGGCCGGCGGCTCCTTCAAGCGGA
TGCGCGAGCAGGCAGAAGCCTACCAGCAACATGGCGCCAAGGCATTCCAA
GTCCCTCTTACAGCCAAACCCCGCCTATACGACGCCCTCCTCGATTCGTC
CCACACCCTTCCTCGTACCCCCTACATCAAAGGAGAACGTCTGCAGGGCC
GAGGAATCGAGCTGGTGGTGCTTGGGGACAAGGAGGAGGCAATGAAAACA
TTATTTGAGATAAGTGATGGTTCTCCGCGGTATGGCCATGGGAGCTATGA
CCCCTTGGAGAAGATCTGGCGGTGGATGCCAGCAGAGATGGGGCCGCATG
AGCAGGCCAAGGGGATGATAGAGGGGTTGAGGGAGCGGGTAAAAGAAGAG
GGGGATATGGTTTTCTACGTGCGTGACCAACCCTCCGGTTACATCATCGG
CATGGCCTGCCTCCTCCACAACACTCCTTTGCACTTACGAGCCGAAATTG
GGGACATATGGCTGACCCCTGCGTTTCGTGGCACTTACGCAGTTCTGGAG
GTGGGCCAGTTGCTTCTCCGATATCTATTTGATAGGCTAGGCTACCGCCG
CGTGGAATGGCGTTGCGATACGGACAACTACGGGGCAAAAAAGACGGCAG
AGCGCATGGGGTTTATGAATGAGGGCGTGCTGCGTAAGCACATGATCTGG
AGGGACGCCAACAGAGACACAGCCGTGTATTCTTTGACCAATTCGGATTG
GCGGGATGGTGCCGCGGACCACTTGGAGGCTTTGGTAAAGCAAAGGTTGG
AGGGAGTGAAGGGGCTAAGGAGTTTGAGGGCAGAGGAAGAGGAGGGAGAG
GAGTTGGCAGGCGGTCTTGAGGCGGAGGTGAGCGCAGCAGCAGTCAAAAA
ACAGAATATGGCGGCGGAGTTGGACAAGGAGAAATGTGCAAAGAAATTCA
GGTAA

Synonyms

Publications